Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002927.1

Orthogroup ID

OG0017031

Physical Location & Seq

Genomic Coordinates Reverse (-)

100923 .. 101492

Gene Structure 570 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002927.1_g000029.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 294 bp

atggattgtaaggaacagttgtatttgccatctgggtttgctccatcccctgatccatcactaagtatcgagttttatgatcaaactctagagcaacaatcagtcctagggtatgttgttgactcatcacaaaccggacatgctcatgatgtagcatcaacaaatccaattggtcctgaccaggagcacagagtacctcatggttccattggtgcagcagctggtcatcgagccattgctcagagtaatggtgaggaaatttctgaagctttggttcaatactctgcaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

97

Amino Acids

10.31

Weight (kDa)

4.47

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017031)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023029
rosa_multiflora	Rmu_sc0002927.1_g000029 Rmu_sc0007339.1_g000003 Rmu_sc0009890.1_g000001 Rmu_sc0027862.1_g000001 Rmu_ssc0000155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058330
rosa_rugosa	Rorug05G0246100
rosa_samantha	Rh1AG088400 Rh3DG266000 Rh5CG151200 Rh5CG155200 Rh7CG392900 Rh7DG427800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	47
AcsI	RAATTY	1 cut(s)	258
AcuI	CTGAAG	1 cut(s)	285
AfaI	GTAC	1 cut(s)	195
AgsI	TTSAA	1 cut(s)	278
AjnI	CCWGG	1 cut(s)	180
AluBI	AGCT	2 cut(s)	221, 269
AluI	AGCT	2 cut(s)	221, 269
Alw21I	GWGCWC	1 cut(s)	189
AlwI	GGATC	1 cut(s)	47
AlwNI	CAGNNNCTG	1 cut(s)	221
ApeKI	GCWGC	2 cut(s)	215, 218
ApoI	RAATTY	1 cut(s)	258
AspA2I	CCTAGG	1 cut(s)	106
AspS9I	GGNCC	1 cut(s)	173
AsuHPI	GGTGA	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	173
AvrII	CCTAGG	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	189
BbvI	GCAGC	2 cut(s)	227, 230
BccI	CCATC	3 cut(s)	37, 52, 64
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	1 cut(s)	79
BfaI	CTAG	2 cut(s)	89, 107
BisI	GCNGC	2 cut(s)	216, 219
BlnI	CCTAGG	1 cut(s)	106
BlsI	GCNGC	2 cut(s)	217, 220
Bme1390I	CCNGG	1 cut(s)	182
Bme18I	GGWCC	1 cut(s)	173
BmgT120I	GGNCC	1 cut(s)	173
BmiI	GGNNCC	1 cut(s)	205
BmrFI	CCNGG	1 cut(s)	182
BmsI	GCATC	1 cut(s)	164
BsaJI	CCNNGG	1 cut(s)	106
BsaWI	WCCGGW	1 cut(s)	134
Bse3DI	GCAATG	1 cut(s)	234
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	1 cut(s)	44
BseMI	GCAATG	1 cut(s)	234
BseMII	CTCAG	1 cut(s)	254
BseXI	GCAGC	2 cut(s)	227, 230
BsgI	GTGCAG	2 cut(s)	234, 270
BsiHKAI	GWGCWC	1 cut(s)	189
BsiSI	CCGG	1 cut(s)	135
Bsp1286I	GDGCHC	1 cut(s)	189
Bsp143I	GATC	2 cut(s)	52, 79
BspCNI	CTCAG	1 cut(s)	253
BspHI	TCATGA	1 cut(s)	145
BspLI	GGNNCC	1 cut(s)	205
BspPI	GGATC	1 cut(s)	47
BsrDI	GCAATG	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	2 cut(s)	52, 79
BssT1I	CCWWGG	1 cut(s)	106
Bst2UI	CCWGG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	18
BstDEI	CTNAG	2 cut(s)	62, 240
BstF5I	GGATG	1 cut(s)	44
BstKTI	GATC	2 cut(s)	55, 82
BstMBI	GATC	2 cut(s)	52, 79
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	143
BstSCI	CCNGG	1 cut(s)	180
BstV1I	GCAGC	2 cut(s)	227, 230
BtsCI	GGATG	1 cut(s)	44
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	1 cut(s)	145
Cfr13I	GGNCC	1 cut(s)	173
Csp6I	GTAC	1 cut(s)	194
CviAII	CATG	3 cut(s)	140, 146, 200
CviJI	RGCY	3 cut(s)	221, 233, 269
CviKI_1	RGCY	3 cut(s)	221, 233, 269
CviQI	GTAC	1 cut(s)	194
DdeI	CTNAG	2 cut(s)	62, 240
DpnI	GATC	2 cut(s)	54, 81
DpnII	GATC	2 cut(s)	52, 79
Eco130I	CCWWGG	1 cut(s)	106
Eco47I	GGWCC	1 cut(s)	173
Eco57I	CTGAAG	1 cut(s)	285
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	1 cut(s)	106
ErhI	CCWWGG	1 cut(s)	106
FaeI	CATG	3 cut(s)	143, 149, 203
FaiI	YATR	6 cut(s)	78, 114, 141, 147, 201, 292
FatI	CATG	3 cut(s)	139, 145, 199
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	2 cut(s)	216, 219
FokI	GGATG	1 cut(s)	31
Fsp4HI	GCNGC	2 cut(s)	216, 219
FspBI	CTAG	2 cut(s)	89, 107
GluI	GCNGC	2 cut(s)	216, 219
HapII	CCGG	1 cut(s)	135
Hin1II	CATG	3 cut(s)	143, 149, 203
HincII	GTYRAC	1 cut(s)	121
HindII	GTYRAC	1 cut(s)	121
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	1 cut(s)	122
HpaII	CCGG	1 cut(s)	135
HphI	GGTGA	1 cut(s)	263
Hpy166II	GTNNAC	1 cut(s)	121
Hpy188I	TCNGA	2 cut(s)	243, 265
Hpy188III	TCNNGA	3 cut(s)	89, 146, 176
Hpy8I	GTNNAC	1 cut(s)	121
HpyCH4III	ACNGT	1 cut(s)	18
HpyCH4V	TGCA	2 cut(s)	215, 287
HpyF3I	CTNAG	2 cut(s)	62, 240
Hsp92II	CATG	3 cut(s)	143, 149, 203
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	2 cut(s)	52, 79
LmnI	GCTCC	2 cut(s)	46, 184
LpnPI	CCDG	7 cut(s)	18, 63, 148, 167, 189, 194, 207
Lsp1109I	GCAGC	2 cut(s)	227, 230
LweI	GCATC	1 cut(s)	164
MaeI	CTAG	2 cut(s)	89, 107
MalI	GATC	2 cut(s)	54, 81
MboI	GATC	2 cut(s)	52, 79
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	1 cut(s)	189
MluCI	AATT	2 cut(s)	168, 258
MlyI	GAGTC	1 cut(s)	116
MnlI	CCTC	2 cut(s)	207, 247
MslI	CAYNNNNRTG	1 cut(s)	144
MspA1I	CMGCKG	1 cut(s)	221
MspI	CCGG	1 cut(s)	135
MspR9I	CCNGG	1 cut(s)	182
MunI	CAATTG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	182
NdeII	GATC	2 cut(s)	52, 79
NlaIII	CATG	3 cut(s)	143, 149, 203
NlaIV	GGNNCC	1 cut(s)	205
NspI	RCATGY	1 cut(s)	143
PagI	TCATGA	1 cut(s)	145
PkrI	GCNGC	2 cut(s)	217, 220
PleI	GAGTC	1 cut(s)	116
PpsI	GAGTC	1 cut(s)	116
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	1 cut(s)	205
PspPI	GGNCC	1 cut(s)	173
PstNI	CAGNNNCTG	1 cut(s)	221
PvuII	CAGCTG	1 cut(s)	221
RsaI	GTAC	1 cut(s)	195
RsaNI	GTAC	1 cut(s)	194
RseI	CAYNNNNRTG	1 cut(s)	144
SatI	GCNGC	2 cut(s)	216, 219
Sau3AI	GATC	2 cut(s)	52, 79
Sau96I	GGNCC	1 cut(s)	173
SchI	GAGTC	1 cut(s)	116
ScrFI	CCNGG	1 cut(s)	182
SduI	GDGCHC	1 cut(s)	189
SetI	ASST	3 cut(s)	199, 223, 271
SfaNI	GCATC	1 cut(s)	164
SinI	GGWCC	1 cut(s)	173
SmiMI	CAYNNNNRTG	1 cut(s)	144
Sse9I	AATT	2 cut(s)	168, 258
SspMI	CTAG	2 cut(s)	89, 107
StyD4I	CCNGG	1 cut(s)	180
StyI	CCWWGG	1 cut(s)	106
TaaI	ACNGT	1 cut(s)	18
TaqI	TCGA	2 cut(s)	69, 229
TasI	AATT	2 cut(s)	168, 258
TseI	GCWGC	2 cut(s)	215, 218
VpaK11BI	GGWCC	1 cut(s)	173
XapI	RAATTY	1 cut(s)	258
XbaI	TCTAGA	1 cut(s)	88
XceI	RCATGY	1 cut(s)	143
XmaJI	CCTAGG	1 cut(s)	106
XspI	CTAG	2 cut(s)	89, 107

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.