Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0017031

Physical Location & Seq

Genomic Coordinates Forward (+)

26470503 .. 26472659

Gene Structure 2157 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0246100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

ATGTGTATGCGCGAAGAAGAACTCATTCAAGATGTTGTTAAAGTGATATGGAGCAAATTACATCCCTCTACTTCAAAATCAGCCATAAACAATGTGTCATCAATACCGTCTTCGTCTTCTTCTTTTTGTCGACCAAAGCATGATGTCTTTCTAAGCTTTAGAGGGGCGGATACCCGCGCATTTATGGGCCATCTACATACTGCATTAATTCACAGCGGAATTTCCACCTTTAGAGATGACAAAGATCTTGAGAAAGGAAAGTCCATTCCCAAAGAACTCGACAAAGCAATTGAGGGATCAAAGGTTTGGGTTGTCATCGTTTCACCAGACTATGCTTCTTCAAAATGGTGCTTGAATGAGCTTTTGAAGATTCTTGAATGCGCTTTTGAAGATTCTTCCTTACCGCAACATGAAGAAAAAGCCCATAATTTGGAGAGCAGATACAAAATAAATAAGAGGAAGGCTAGTTTGCAGAACAAGGAAGACATCTCTAACCATAACAAAAGGAAAATGGTTAAGCTTAGCCTCACGGTTAATTATGATGGAGAACGGGCCAGTCCTGTTTACACTGGTGATAAAACAAAAGAAATAGTGATTTCAGATGACAGTACTCCTGATGAGCTTCTGGATCAAATATATAGTTTTGTTGGGGTGGATCCAAAACAAAATAAGAGCAATACTGATGATAACCAAAGAATTTTTATTGGTACGAGCCTTTCTTCCAGTACGGGCTTCAAGAATCCGCTGCGGAATGCTTGTGAAAGAAGAATGACTGAAGTTCTAGTTTTGGTGAATTATGACGGGGAGTGGGTGAATTCTACATACGTTGGTCGTCAAACGAAAGGAATAGTGATTTCAGAGGATATTACGTATCAAGGACTTGTGGAGAGAGTGTATGGTGTTGTCGGAGTTGATCCACATGAATATAAGCTGATATTGAAGACCAGATATGAATCAAAGTTACCTACTCAACCCGTGGAGATAATCAATGATGATGACCTTGCATTCTTCATCAAAGAGAACCTTTCACGGGATATGAGCTCCCGAATTCCTTTGTGCACGACTCTTGAACGACGGTCATTTCCTTATGGAAGGGTGGAGTCATCAGAGAACAGCAATACGGCACATATTAACAGATTTGGGACCTATCACAGTTACTTTCATGGTTTGACACCTGATCTAGTGCCTTATCTGCAGCTGCAGCCTTTCTACCAGCAGCAACAACCGTCTTACCAACAAACGTGGACATGGCAGCCTTACTACAAACCTTCCTATCAGCAGCTGCAATGGGGATACCAACAGCCCCATCATTCCTACATGCCGCCACAATCTTCATGCCAACAGCCCCCCGAAATCTTCTGGCATCACTATCAGCCCCATATGTACCCACCAACATCTTACCAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005819 GO:0005829 GO:0005839 GO:0005840 GO:0005856 GO:0006508 GO:0006511 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009507 GO:0009524 GO:0009536 GO:0009987 GO:0015630 GO:0016020 GO:0019538 GO:0019773 GO:0019941 GO:0022626 GO:0030163 GO:0031090 GO:0032991 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043632 GO:0044237 GO:0044238 GO:0044248 GO:0044257 GO:0044260 GO:0044265 GO:0044267 GO:0044422 GO:0044424 GO:0044430 GO:0044437 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:0051603 GO:0071704 GO:0098588 GO:0098805 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

468

Amino Acids

54.03

Weight (kDa)

6.63

Isoelectric Point (pI)

54.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TIR	PF01582	46 - 131	1.3e-26	TIR domain
TIR_2	PF13676	49 - 128	7.6e-16	TIR domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017031)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023029
rosa_multiflora	Rmu_sc0002927.1_g000029 Rmu_sc0007339.1_g000003 Rmu_sc0009890.1_g000001 Rmu_sc0027862.1_g000001 Rmu_ssc0000155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058330
rosa_rugosa	Rorug05G0246100
rosa_samantha	Rh1AG088400 Rh3DG266000 Rh5CG151200 Rh5CG155200 Rh7CG392900 Rh7DG427800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	430
AccI	GTMKAC	1 cut(s)	130
AccII	CGCG	2 cut(s)	12, 177
AciI	CCGC	7 cut(s)	167, 175, 216, 404, 743, 748, 1322
AclWI	GGATC	5 cut(s)	304, 636, 650, 663, 908
AcsI	RAATTY	4 cut(s)	219, 696, 814, 1047
AcuI	CTGAAG	1 cut(s)	795
AfaI	GTAC	4 cut(s)	610, 709, 727, 1385
AfiI	CCNNNNNNNGG	2 cut(s)	430, 1030
AluBI	AGCT	8 cut(s)	156, 361, 520, 622, 931, 1041, 1198, 1282
AluI	AGCT	8 cut(s)	156, 361, 520, 622, 931, 1041, 1198, 1282
Alw21I	GWGCWC	2 cut(s)	1043, 1061
Alw44I	GTGCAC	1 cut(s)	1057
AlwI	GGATC	5 cut(s)	304, 636, 650, 663, 908
AlwNI	CAGNNNCTG	1 cut(s)	1282
AoxI	GGCC	2 cut(s)	187, 552
ApaLI	GTGCAC	1 cut(s)	1057
ApeKI	GCWGC	8 cut(s)	745, 1195, 1198, 1201, 1216, 1252, 1279, 1282
ApoI	RAATTY	4 cut(s)	219, 696, 814, 1047
AseI	ATTAAT	1 cut(s)	206
Asp700I	GAANNNNTTC	1 cut(s)	24
AspLEI	GCGC	3 cut(s)	12, 179, 383
AspS9I	GGNCC	3 cut(s)	187, 552, 1143
AsuHPI	GGTGA	4 cut(s)	315, 584, 802, 823
AvaII	GGWCC	1 cut(s)	1143
BaeGI	GKGCMC	1 cut(s)	1061
BamHI	GGATCC	1 cut(s)	655
BanII	GRGCYC	1 cut(s)	1043
BbsI	GAAGAC	4 cut(s)	102, 108, 489, 947
Bbv12I	GWGCWC	2 cut(s)	1043, 1061
BbvI	GCAGC	8 cut(s)	732, 1185, 1207, 1213, 1228, 1264, 1269, 1291
BccI	CCATC	3 cut(s)	198, 536, 1314
BceAI	ACGGC	1 cut(s)	1137
BciVI	GTATCC	2 cut(s)	163, 1286
BfaI	CTAG	3 cut(s)	465, 782, 1181
BfmI	CTRYAG	2 cut(s)	1193, 1199
BfuI	GTATCC	2 cut(s)	163, 1286
BglII	AGATCT	1 cut(s)	244
BisI	GCNGC	9 cut(s)	746, 1196, 1199, 1202, 1217, 1253, 1280, 1283, 1322
BlpI	GCTNAGC	1 cut(s)	521
BlsI	GCNGC	9 cut(s)	747, 1197, 1200, 1203, 1218, 1254, 1281, 1284, 1323
BmcAI	AGTACT	1 cut(s)	610
Bme18I	GGWCC	1 cut(s)	1143
BmgT120I	GGNCC	3 cut(s)	187, 552, 1143
BmiI	GGNNCC	2 cut(s)	657, 1144
BmsI	GCATC	1 cut(s)	1372
BpiI	GAAGAC	4 cut(s)	102, 108, 489, 947
Bpu1102I	GCTNAGC	1 cut(s)	521
BpuEI	CTTGAG	1 cut(s)	269
BsaAI	YACGTR	1 cut(s)	870
BsaBI	GATNNNNATC	1 cut(s)	952
BsaJI	CCNNGG	1 cut(s)	975
BsaXI	ACNNNNNCTCC	2 cut(s)	878, 908
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 1030
Bse1I	ACTGG	4 cut(s)	555, 574, 723, 1402
Bse3DI	GCAATG	1 cut(s)	1292
Bse8I	GATNNNNATC	1 cut(s)	952
BseDI	CCNNGG	1 cut(s)	975
BseGI	GGATG	1 cut(s)	61
BseJI	GATNNNNATC	1 cut(s)	952
BseLI	CCNNNNNNNGG	2 cut(s)	430, 1030
BseMI	GCAATG	1 cut(s)	1292
BseNI	ACTGG	4 cut(s)	555, 574, 723, 1402
BseSI	GKGCMC	1 cut(s)	1061
BseXI	GCAGC	8 cut(s)	732, 1185, 1207, 1213, 1228, 1264, 1269, 1291
Bsh1236I	CGCG	2 cut(s)	12, 177
BshFI	GGCC	2 cut(s)	189, 554
BsiHKAI	GWGCWC	2 cut(s)	1043, 1061
BslFI	GGGAC	1 cut(s)	1156
BslI	CCNNNNNNNGG	2 cut(s)	430, 1030
BsmFI	GGGAC	1 cut(s)	1156
BsmI	GAATGC	3 cut(s)	383, 757, 1004
BsnI	GGCC	2 cut(s)	189, 554
Bsp1286I	GDGCHC	2 cut(s)	1043, 1061
Bsp143I	GATC	6 cut(s)	244, 296, 628, 655, 913, 1177
Bsp1720I	GCTNAGC	1 cut(s)	521
BspACI	CCGC	7 cut(s)	167, 175, 216, 404, 743, 748, 1322
BspANI	GGCC	2 cut(s)	189, 554
BspFNI	CGCG	2 cut(s)	12, 177
BspLI	GGNNCC	2 cut(s)	657, 1144
BspMAI	CTGCAG	2 cut(s)	1197, 1203
BspPI	GGATC	5 cut(s)	304, 636, 650, 663, 908
BsrDI	GCAATG	1 cut(s)	1292
BsrI	ACTGG	4 cut(s)	555, 574, 723, 1402
BssECI	CCNNGG	1 cut(s)	975
BssMI	GATC	6 cut(s)	244, 296, 628, 655, 913, 1177
Bst4CI	ACNGT	6 cut(s)	108, 532, 608, 1077, 1154, 1227
BstBAI	YACGTR	1 cut(s)	870
BstDEI	CTNAG	2 cut(s)	152, 521
BstDSI	CCRYGG	1 cut(s)	975
BstF5I	GGATG	1 cut(s)	61
BstFNI	CGCG	2 cut(s)	12, 177
BstHHI	GCGC	3 cut(s)	12, 179, 383
BstKTI	GATC	6 cut(s)	247, 299, 631, 658, 916, 1180
BstMBI	GATC	6 cut(s)	244, 296, 628, 655, 913, 1177
BstMWI	GCNNNNNNNGC	2 cut(s)	1192, 1201
BstNSI	RCATGY	1 cut(s)	1321
BstSFI	CTRYAG	2 cut(s)	1193, 1199
BstSLI	GKGCMC	1 cut(s)	1061
BstSNI	TACGTA	1 cut(s)	870
BstUI	CGCG	2 cut(s)	12, 177
BstV1I	GCAGC	8 cut(s)	732, 1185, 1207, 1213, 1228, 1264, 1269, 1291
BstV2I	GAAGAC	4 cut(s)	102, 108, 489, 947
BstX2I	RGATCY	2 cut(s)	244, 655
BstYI	RGATCY	2 cut(s)	244, 655
BsuI	GTATCC	2 cut(s)	163, 1286
BsuRI	GGCC	2 cut(s)	189, 554
BtgI	CCRYGG	1 cut(s)	975
BtsCI	GGATG	1 cut(s)	61
BtsIMutI	CAGTG	1 cut(s)	567
CaiI	CAGNNNCTG	1 cut(s)	1282
CfoI	GCGC	3 cut(s)	12, 179, 383
Cfr13I	GGNCC	3 cut(s)	187, 552, 1143
Csp6I	GTAC	4 cut(s)	609, 708, 726, 1384
CspCI	CAANNNNNGTGG	2 cut(s)	1223, 1258
CviAII	CATG	7 cut(s)	140, 410, 920, 1163, 1248, 1318, 1335
CviQI	GTAC	4 cut(s)	609, 708, 726, 1384
DdeI	CTNAG	2 cut(s)	152, 521
DpnI	GATC	6 cut(s)	246, 298, 630, 657, 915, 1179
DpnII	GATC	6 cut(s)	244, 296, 628, 655, 913, 1177
EciI	GGCGGA	1 cut(s)	182
Ecl136II	GAGCTC	1 cut(s)	1041
Eco105I	TACGTA	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	1043
Eco47I	GGWCC	1 cut(s)	1143
Eco53kI	GAGCTC	1 cut(s)	1041
Eco57I	CTGAAG	1 cut(s)	795
EcoICRI	GAGCTC	1 cut(s)	1041
EcoO109I	RGGNCCY	1 cut(s)	1143
EcoRI	GAATTC	2 cut(s)	814, 1047
EcoT38I	GRGCYC	1 cut(s)	1043
FaeI	CATG	7 cut(s)	143, 413, 923, 1166, 1251, 1321, 1338
FalI	AAGNNNNNCTT	2 cut(s)	1008, 1040
FaqI	GGGAC	1 cut(s)	1156
FatI	CATG	7 cut(s)	139, 409, 919, 1162, 1247, 1317, 1334
FauI	CCCGC	1 cut(s)	182
FauNDI	CATATG	1 cut(s)	1380
FblI	GTMKAC	1 cut(s)	130
Fnu4HI	GCNGC	9 cut(s)	746, 1196, 1199, 1202, 1217, 1253, 1280, 1283, 1322
FokI	GGATG	1 cut(s)	48
FriOI	GRGCYC	1 cut(s)	1043
Fsp4HI	GCNGC	9 cut(s)	746, 1196, 1199, 1202, 1217, 1253, 1280, 1283, 1322
FspBI	CTAG	3 cut(s)	465, 782, 1181
GlaI	GCGC	3 cut(s)	11, 178, 382
GluI	GCNGC	9 cut(s)	746, 1196, 1199, 1202, 1217, 1253, 1280, 1283, 1322
HaeIII	GGCC	2 cut(s)	189, 554
HhaI	GCGC	3 cut(s)	12, 179, 383
Hin1II	CATG	7 cut(s)	143, 413, 923, 1166, 1251, 1321, 1338
Hin6I	GCGC	3 cut(s)	10, 177, 381
HinP1I	GCGC	3 cut(s)	10, 177, 381
HincII	GTYRAC	1 cut(s)	131
HindII	GTYRAC	1 cut(s)	131
HindIII	AAGCTT	2 cut(s)	154, 518
HinfI	GANTC	6 cut(s)	370, 392, 739, 953, 1063, 1100
HphI	GGTGA	4 cut(s)	315, 584, 802, 823
Hpy166II	GTNNAC	4 cut(s)	131, 565, 1059, 1245
Hpy188I	TCNGA	4 cut(s)	601, 859, 908, 1108
Hpy188III	TCNNGA	8 cut(s)	29, 248, 374, 614, 626, 736, 1044, 1067
Hpy8I	GTNNAC	4 cut(s)	131, 565, 1059, 1245
Hpy99I	CGWCG	1 cut(s)	1077
HpyAV	CCTTC	3 cut(s)	454, 1086, 1278
HpyCH4III	ACNGT	6 cut(s)	108, 532, 608, 1077, 1154, 1227
HpyCH4IV	ACGT	3 cut(s)	825, 869, 1241
HpyCH4V	TGCA	7 cut(s)	203, 472, 1004, 1059, 1195, 1201, 1285
HpyF10VI	GCNNNNNNNGC	2 cut(s)	1192, 1201
HpyF3I	CTNAG	2 cut(s)	152, 521
HpySE526I	ACGT	3 cut(s)	825, 869, 1241
Hsp92II	CATG	7 cut(s)	143, 413, 923, 1166, 1251, 1321, 1338
HspAI	GCGC	3 cut(s)	10, 177, 381
Kzo9I	GATC	6 cut(s)	244, 296, 628, 655, 913, 1177
LmnI	GCTCC	2 cut(s)	51, 1046
Lsp1109I	GCAGC	8 cut(s)	732, 1185, 1207, 1213, 1228, 1264, 1269, 1291
LweI	GCATC	1 cut(s)	1372
MaeI	CTAG	3 cut(s)	465, 782, 1181
MaeII	ACGT	3 cut(s)	825, 869, 1241
MaeIII	GTNAC	2 cut(s)	960, 1154
MalI	GATC	6 cut(s)	246, 298, 630, 657, 915, 1179
MboI	GATC	6 cut(s)	244, 296, 628, 655, 913, 1177
MfeI	CAATTG	1 cut(s)	288
MflI	RGATCY	2 cut(s)	244, 655
MhlI	GDGCHC	2 cut(s)	1043, 1061
MlyI	GAGTC	2 cut(s)	1057, 1109
MmeI	TCCRAC	1 cut(s)	886
MnlI	CCTC	6 cut(s)	76, 155, 286, 450, 536, 853
MroXI	GAANNNNTTC	1 cut(s)	24
MseI	TTAA	5 cut(s)	39, 206, 516, 534, 1131
MspA1I	CMGCKG	4 cut(s)	216, 745, 1198, 1282
MunI	CAATTG	1 cut(s)	288
Mva1269I	GAATGC	3 cut(s)	383, 757, 1004
MvnI	CGCG	2 cut(s)	12, 177
MwoI	GCNNNNNNNGC	2 cut(s)	1192, 1201
NdeI	CATATG	1 cut(s)	1380
NdeII	GATC	6 cut(s)	244, 296, 628, 655, 913, 1177
NlaIII	CATG	7 cut(s)	143, 413, 923, 1166, 1251, 1321, 1338
NlaIV	GGNNCC	2 cut(s)	657, 1144
NspI	RCATGY	1 cut(s)	1321
PctI	GAATGC	3 cut(s)	383, 757, 1004
PdmI	GAANNNNTTC	1 cut(s)	24
PfeI	GAWTC	4 cut(s)	370, 392, 739, 953
PflMI	CCANNNNNTGG	1 cut(s)	430
PkrI	GCNGC	9 cut(s)	747, 1197, 1200, 1203, 1218, 1254, 1281, 1284, 1323
PleI	GAGTC	2 cut(s)	1057, 1108
PpsI	GAGTC	2 cut(s)	1057, 1108
Ppu21I	YACGTR	1 cut(s)	870
PpuMI	RGGWCCY	1 cut(s)	1143
PshBI	ATTAAT	1 cut(s)	206
Psp124BI	GAGCTC	1 cut(s)	1043
Psp5II	RGGWCCY	1 cut(s)	1143
PspN4I	GGNNCC	2 cut(s)	657, 1144
PspPI	GGNCC	3 cut(s)	187, 552, 1143
PspPPI	RGGWCCY	1 cut(s)	1143
PstI	CTGCAG	2 cut(s)	1197, 1203
PstNI	CAGNNNCTG	1 cut(s)	1282
PsuI	RGATCY	2 cut(s)	244, 655
PvuII	CAGCTG	2 cut(s)	1198, 1282
RsaI	GTAC	4 cut(s)	610, 709, 727, 1385
RsaNI	GTAC	4 cut(s)	609, 708, 726, 1384
SacI	GAGCTC	1 cut(s)	1043
SalI	GTCGAC	1 cut(s)	129
SaqAI	TTAA	5 cut(s)	39, 206, 516, 534, 1131
SatI	GCNGC	9 cut(s)	746, 1196, 1199, 1202, 1217, 1253, 1280, 1283, 1322
Sau3AI	GATC	6 cut(s)	244, 296, 628, 655, 913, 1177
Sau96I	GGNCC	3 cut(s)	187, 552, 1143
ScaI	AGTACT	1 cut(s)	610
SchI	GAGTC	2 cut(s)	1057, 1109
SduI	GDGCHC	2 cut(s)	1043, 1061
SfaNI	GCATC	1 cut(s)	1372
SfcI	CTRYAG	2 cut(s)	1193, 1199
SinI	GGWCC	1 cut(s)	1143
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SnaBI	TACGTA	1 cut(s)	870
SsiI	CCGC	7 cut(s)	167, 175, 216, 404, 743, 748, 1322
SspMI	CTAG	3 cut(s)	465, 782, 1181
SstI	GAGCTC	1 cut(s)	1043
TaaI	ACNGT	6 cut(s)	108, 532, 608, 1077, 1154, 1227
TaiI	ACGT	3 cut(s)	828, 872, 1244
TaqI	TCGA	2 cut(s)	130, 279
TatI	WGTACW	1 cut(s)	608
TauI	GCSGC	1 cut(s)	1324
TfiI	GAWTC	4 cut(s)	370, 392, 739, 953
Tru1I	TTAA	5 cut(s)	39, 206, 516, 534, 1131
Tru9I	TTAA	5 cut(s)	39, 206, 516, 534, 1131
TscAI	CASTG	1 cut(s)	574
TseI	GCWGC	8 cut(s)	745, 1195, 1198, 1201, 1216, 1252, 1279, 1282
TspDTI	ATGAA	6 cut(s)	426, 936, 966, 1000, 1151, 1323
TspRI	CASTG	1 cut(s)	574
Van91I	CCANNNNNTGG	1 cut(s)	430
VneI	GTGCAC	1 cut(s)	1057
VpaK11BI	GGWCC	1 cut(s)	1143
VspI	ATTAAT	1 cut(s)	206
XapI	RAATTY	4 cut(s)	219, 696, 814, 1047
XceI	RCATGY	1 cut(s)	1321
XmiI	GTMKAC	1 cut(s)	130
XmnI	GAANNNNTTC	1 cut(s)	24
XspI	CTAG	3 cut(s)	465, 782, 1181
ZrmI	AGTACT	1 cut(s)	610

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.