Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000155.1

Orthogroup ID

OG0017031

Physical Location & Seq

Genomic Coordinates Reverse (-)

7146 .. 8247

Gene Structure 1102 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_ssc0000155.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

atgcgctcagaactggagcctggagcctcaagtctgaagtctgaagagagcaaagctaaagcagtcgtaaaatggagagtagtgaaggagaagaggtttcctatcattaaaggcatcattccccagtctgctccatcccctgatccatcactaagtatcgagttttatgagcaaactccagagcaacaatcagtgctagggtatgttgttgactcgtcacaaacaggacatgctcatgatgtagcatcaacgtatccaattggtcctgaccaggagcaaagagtaccttatggttccattggtgcagcagctggtcatcgagccattgctcagagtaatgctgaggaaatttctgaagctttgtttcaatactctgcaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

127

Amino Acids

13.74

Weight (kDa)

5.34

Isoelectric Point (pI)

65.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017031)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023029
rosa_multiflora	Rmu_sc0002927.1_g000029 Rmu_sc0007339.1_g000003 Rmu_sc0009890.1_g000001 Rmu_sc0027862.1_g000001 Rmu_ssc0000155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058330
rosa_rugosa	Rorug05G0246100
rosa_samantha	Rh1AG088400 Rh3DG266000 Rh5CG151200 Rh5CG155200 Rh7CG392900 Rh7DG427800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	137
AcsI	RAATTY	1 cut(s)	348
AcuI	CTGAAG	3 cut(s)	56, 63, 375
AfaI	GTAC	1 cut(s)	285
AgsI	TTSAA	1 cut(s)	368
AjnI	CCWGG	2 cut(s)	19, 270
AluBI	AGCT	3 cut(s)	56, 311, 359
AluI	AGCT	3 cut(s)	56, 311, 359
AlwI	GGATC	1 cut(s)	137
AlwNI	CAGNNNCTG	1 cut(s)	311
ApeKI	GCWGC	2 cut(s)	305, 308
ApoI	RAATTY	1 cut(s)	348
AspLEI	GCGC	1 cut(s)	6
AspS9I	GGNCC	1 cut(s)	263
AvaII	GGWCC	1 cut(s)	263
BbvCI	CCTCAGC	1 cut(s)	342
BbvI	GCAGC	2 cut(s)	317, 320
BccI	CCATC	2 cut(s)	142, 154
BciT130I	CCWGG	2 cut(s)	21, 272
BciVI	GTATCC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	197
BfuI	GTATCC	1 cut(s)	264
BisI	GCNGC	2 cut(s)	306, 309
BlsI	GCNGC	2 cut(s)	307, 310
Bme1390I	CCNGG	2 cut(s)	21, 272
Bme18I	GGWCC	1 cut(s)	263
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	3 cut(s)	18, 25, 295
BmrFI	CCNGG	2 cut(s)	21, 272
BmrI	ACTGGG	1 cut(s)	118
BmsI	GCATC	2 cut(s)	123, 254
BmuI	ACTGGG	1 cut(s)	118
BpmI	CTGGAG	3 cut(s)	35, 42, 162
Bpu10I	CCTNAGC	1 cut(s)	342
BpuEI	CTTGAG	1 cut(s)	13
BsaXI	ACNNNNNCTCC	2 cut(s)	80, 110
Bse1I	ACTGG	2 cut(s)	18, 124
Bse3DI	GCAATG	1 cut(s)	324
BseBI	CCWGG	2 cut(s)	21, 272
BseGI	GGATG	1 cut(s)	134
BseMI	GCAATG	1 cut(s)	324
BseMII	CTCAG	3 cut(s)	21, 333, 344
BseNI	ACTGG	2 cut(s)	18, 124
BseXI	GCAGC	2 cut(s)	317, 320
BsgI	GTGCAG	2 cut(s)	324, 360
Bsp143I	GATC	1 cut(s)	142
BspCNI	CTCAG	3 cut(s)	20, 334, 343
BspHI	TCATGA	1 cut(s)	235
BspLI	GGNNCC	3 cut(s)	18, 25, 295
BspPI	GGATC	1 cut(s)	137
BsrDI	GCAATG	1 cut(s)	324
BsrI	ACTGG	2 cut(s)	18, 124
BssMI	GATC	1 cut(s)	142
Bst2UI	CCWGG	2 cut(s)	21, 272
Bst6I	CTCTTC	2 cut(s)	39, 86
BstDEI	CTNAG	4 cut(s)	7, 152, 330, 342
BstF5I	GGATG	1 cut(s)	134
BstHHI	GCGC	1 cut(s)	6
BstKTI	GATC	1 cut(s)	145
BstMBI	GATC	1 cut(s)	142
BstNI	CCWGG	2 cut(s)	21, 272
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	19, 270
BstV1I	GCAGC	2 cut(s)	317, 320
BsuI	GTATCC	1 cut(s)	264
BtsCI	GGATG	1 cut(s)	134
BtsIMutI	CAGTG	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	311
CciI	TCATGA	1 cut(s)	235
CfoI	GCGC	1 cut(s)	6
Cfr13I	GGNCC	1 cut(s)	263
Csp6I	GTAC	1 cut(s)	284
CviAII	CATG	2 cut(s)	230, 236
CviJI	RGCY	6 cut(s)	19, 26, 56, 311, 323, 359
CviKI_1	RGCY	6 cut(s)	19, 26, 56, 311, 323, 359
CviQI	GTAC	1 cut(s)	284
DdeI	CTNAG	4 cut(s)	7, 152, 330, 342
DpnI	GATC	1 cut(s)	144
DpnII	GATC	1 cut(s)	142
Eam1104I	CTCTTC	2 cut(s)	39, 86
EarI	CTCTTC	2 cut(s)	39, 86
Eco47I	GGWCC	1 cut(s)	263
Eco57I	CTGAAG	3 cut(s)	56, 63, 375
EcoRII	CCWGG	2 cut(s)	19, 270
FaeI	CATG	2 cut(s)	233, 239
FaiI	YATR	6 cut(s)	168, 204, 231, 237, 291, 382
FalI	AAGNNNNNCTT	2 cut(s)	271, 303
FatI	CATG	2 cut(s)	229, 235
Fnu4HI	GCNGC	2 cut(s)	306, 309
FokI	GGATG	1 cut(s)	121
Fsp4HI	GCNGC	2 cut(s)	306, 309
FspBI	CTAG	1 cut(s)	197
GlaI	GCGC	1 cut(s)	5
GluI	GCNGC	2 cut(s)	306, 309
GsuI	CTGGAG	3 cut(s)	35, 42, 162
HhaI	GCGC	1 cut(s)	6
Hin1II	CATG	2 cut(s)	233, 239
Hin6I	GCGC	1 cut(s)	4
HinP1I	GCGC	1 cut(s)	4
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HindIII	AAGCTT	1 cut(s)	357
HinfI	GANTC	1 cut(s)	212
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	5 cut(s)	10, 36, 43, 333, 355
Hpy188III	TCNNGA	3 cut(s)	179, 236, 266
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	79
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	2 cut(s)	305, 377
HpyF3I	CTNAG	4 cut(s)	7, 152, 330, 342
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	2 cut(s)	233, 239
HspAI	GCGC	1 cut(s)	4
Kzo9I	GATC	1 cut(s)	142
LmnI	GCTCC	4 cut(s)	16, 23, 136, 274
Lsp1109I	GCAGC	2 cut(s)	317, 320
LweI	GCATC	2 cut(s)	123, 254
MaeI	CTAG	1 cut(s)	197
MaeII	ACGT	1 cut(s)	251
MaeIII	GTNAC	1 cut(s)	216
MalI	GATC	1 cut(s)	144
MboI	GATC	1 cut(s)	142
MboII	GAAGA	2 cut(s)	56, 103
MfeI	CAATTG	1 cut(s)	258
MluCI	AATT	2 cut(s)	258, 348
MlyI	GAGTC	1 cut(s)	206
MnlI	CCTC	3 cut(s)	37, 87, 337
MseI	TTAA	1 cut(s)	108
MslI	CAYNNNNRTG	1 cut(s)	234
MspA1I	CMGCKG	1 cut(s)	311
MspR9I	CCNGG	2 cut(s)	21, 272
MunI	CAATTG	1 cut(s)	258
MvaI	CCWGG	2 cut(s)	21, 272
NdeII	GATC	1 cut(s)	142
NlaIII	CATG	2 cut(s)	233, 239
NlaIV	GGNNCC	3 cut(s)	18, 25, 295
NmuCI	GTSAC	1 cut(s)	216
NspI	RCATGY	1 cut(s)	233
PagI	TCATGA	1 cut(s)	235
PkrI	GCNGC	2 cut(s)	307, 310
PleI	GAGTC	1 cut(s)	206
PpsI	GAGTC	1 cut(s)	206
Psp6I	CCWGG	2 cut(s)	19, 270
PspGI	CCWGG	2 cut(s)	19, 270
PspN4I	GGNNCC	3 cut(s)	18, 25, 295
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	311
PvuII	CAGCTG	1 cut(s)	311
RsaI	GTAC	1 cut(s)	285
RsaNI	GTAC	1 cut(s)	284
RseI	CAYNNNNRTG	1 cut(s)	234
SaqAI	TTAA	1 cut(s)	108
SatI	GCNGC	2 cut(s)	306, 309
Sau3AI	GATC	1 cut(s)	142
Sau96I	GGNCC	1 cut(s)	263
SchI	GAGTC	1 cut(s)	206
ScrFI	CCNGG	2 cut(s)	21, 272
SetI	ASST	6 cut(s)	58, 98, 254, 289, 313, 361
SfaNI	GCATC	2 cut(s)	123, 254
SinI	GGWCC	1 cut(s)	263
SmiMI	CAYNNNNRTG	1 cut(s)	234
SmlI	CTYRAG	1 cut(s)	28
SmoI	CTYRAG	1 cut(s)	28
Sse9I	AATT	2 cut(s)	258, 348
SspMI	CTAG	1 cut(s)	197
StyD4I	CCNGG	2 cut(s)	19, 270
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	2 cut(s)	159, 319
TasI	AATT	2 cut(s)	258, 348
Tru1I	TTAA	1 cut(s)	108
Tru9I	TTAA	1 cut(s)	108
TscAI	CASTG	1 cut(s)	198
TseFI	GTSAC	1 cut(s)	216
TseI	GCWGC	2 cut(s)	305, 308
Tsp45I	GTSAC	1 cut(s)	216
TspRI	CASTG	1 cut(s)	198
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	348
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	1 cut(s)	197

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.