Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007339.1

Orthogroup ID

OG0017031

Physical Location & Seq

Genomic Coordinates Forward (+)

4218 .. 8141

Gene Structure 3924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007339.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 816 bp

atggtccaccttgtcgttgtacttgttgcccagtgggtggtctctgccagttatgttgaggttgaaacggagcaggttgctgtgcaggtcggaactggggttgctgcattagtggtgcatgatatgcttgattctgtgggcaatgtttctgaacatgtcccatttgcccacaatgataacatcttcgcatgtgcctcaaatccttaccaggatccatattatgcaggaatgatggtggcttatggacatcagcctttgattaccatatgggttagcagtatatcgtttgatgcaaatgctgatattgcatctgagggcacaactgatgtaagcattgtcattttgttgtactatatctctttctgcgtctatttgtttgttattggtatgcttctgtttgtgcttgtcaagtatgttgtactgactgttaaatgttgtaagggaggcaaagggatcacagatttgaaatcagctcttgagaaagtttttggtgagacccatgttgacagtcaagaggagttccttcaaaccttttcaactcagagaaatttctttaggtttgctccatcccctgatccatcactaagtatcgagttttatgatcaaactccagagcaacaatcagtcctagggtatgttgttaactcatcacaaacaggacatgcacatgatgtagcatcaacaaatccaattggtcctgacctggagcacagagtacctcatggttccattggtgcagcagctggtcatcgagccattgctcagagtaatgctgaggaaatttctgaagctttgtttcaatactctgcaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

271

Amino Acids

29.45

Weight (kDa)

4.72

Isoelectric Point (pI)

35.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017031)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023029
rosa_multiflora	Rmu_sc0002927.1_g000029 Rmu_sc0007339.1_g000003 Rmu_sc0009890.1_g000001 Rmu_sc0027862.1_g000001 Rmu_ssc0000155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058330
rosa_rugosa	Rorug05G0246100
rosa_samantha	Rh1AG088400 Rh3DG266000 Rh5CG151200 Rh5CG155200 Rh7CG392900 Rh7DG427800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	64, 76
AccB7I	CCANNNNNTGG	1 cut(s)	37
AclWI	GGATC	4 cut(s)	206, 219, 461, 569
AcsI	RAATTY	2 cut(s)	547, 780
AcuI	CTGAAG	1 cut(s)	807
AfaI	GTAC	4 cut(s)	21, 350, 420, 717
AfiI	CCNNNNNNNGG	1 cut(s)	37
AflIII	ACRYGT	1 cut(s)	154
AgsI	TTSAA	5 cut(s)	65, 466, 527, 537, 800
AjnI	CCWGG	2 cut(s)	207, 702
AluBI	AGCT	3 cut(s)	473, 743, 791
AluI	AGCT	3 cut(s)	473, 743, 791
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	2 cut(s)	46, 488
AlwI	GGATC	4 cut(s)	206, 219, 461, 569
AlwNI	CAGNNNCTG	1 cut(s)	743
ApeKI	GCWGC	3 cut(s)	104, 737, 740
ApoI	RAATTY	2 cut(s)	547, 780
AspA2I	CCTAGG	1 cut(s)	628
AspS9I	GGNCC	2 cut(s)	4, 695
AsuHPI	GGTGA	1 cut(s)	503
AvaII	GGWCC	2 cut(s)	4, 695
AvrII	CCTAGG	1 cut(s)	628
BaeGI	GKGCMC	1 cut(s)	320
BamHI	GGATCC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	711
BbvCI	CCTCAGC	1 cut(s)	774
BbvI	GCAGC	3 cut(s)	91, 749, 752
BccI	CCATC	3 cut(s)	226, 574, 586
BciT130I	CCWGG	2 cut(s)	209, 704
BclI	TGATCA	1 cut(s)	601
BcoDI	GTCTC	2 cut(s)	46, 488
BfaI	CTAG	1 cut(s)	629
BfuAI	ACCTGC	2 cut(s)	64, 76
BisI	GCNGC	3 cut(s)	105, 738, 741
BlnI	CCTAGG	1 cut(s)	628
BlsI	GCNGC	3 cut(s)	106, 739, 742
Bme1390I	CCNGG	2 cut(s)	209, 704
Bme18I	GGWCC	2 cut(s)	4, 695
BmgT120I	GGNCC	2 cut(s)	4, 695
BmiI	GGNNCC	2 cut(s)	213, 727
BmrFI	CCNGG	2 cut(s)	209, 704
BmrI	ACTGGG	2 cut(s)	25, 105
BmsI	GCATC	3 cut(s)	280, 317, 686
BmuI	ACTGGG	2 cut(s)	25, 105
BpmI	CTGGAG	2 cut(s)	594, 725
Bpu10I	CCTNAGC	1 cut(s)	774
BpuEI	CTTGAG	1 cut(s)	497
BsaI	GGTCTC	2 cut(s)	46, 488
BsaJI	CCNNGG	1 cut(s)	628
Bsc4I	CCNNNNNNNGG	1 cut(s)	37
Bse1I	ACTGG	3 cut(s)	31, 48, 100
Bse3DI	GCAATG	2 cut(s)	148, 756
BseBI	CCWGG	2 cut(s)	209, 704
BseDI	CCNNGG	1 cut(s)	628
BseGI	GGATG	1 cut(s)	566
BseLI	CCNNNNNNNGG	1 cut(s)	37
BseMI	GCAATG	2 cut(s)	148, 756
BseMII	CTCAG	4 cut(s)	303, 554, 765, 776
BseNI	ACTGG	3 cut(s)	31, 48, 100
BseRI	GAGGAG	1 cut(s)	530
BseSI	GKGCMC	1 cut(s)	320
BseXI	GCAGC	3 cut(s)	91, 749, 752
BsgI	GTGCAG	3 cut(s)	104, 756, 792
BsiHKAI	GWGCWC	1 cut(s)	711
BslFI	GGGAC	1 cut(s)	143
BslI	CCNNNNNNNGG	1 cut(s)	37
BsmAI	GTCTC	2 cut(s)	46, 488
BsmFI	GGGAC	1 cut(s)	143
Bso31I	GGTCTC	2 cut(s)	46, 488
Bsp1286I	GDGCHC	2 cut(s)	320, 711
Bsp143I	GATC	4 cut(s)	211, 453, 574, 601
BspCNI	CTCAG	4 cut(s)	304, 553, 766, 775
BspLI	GGNNCC	2 cut(s)	213, 727
BspMI	ACCTGC	2 cut(s)	64, 76
BspPI	GGATC	4 cut(s)	206, 219, 461, 569
BspTNI	GGTCTC	2 cut(s)	46, 488
BsrDI	GCAATG	2 cut(s)	148, 756
BsrI	ACTGG	3 cut(s)	31, 48, 100
BssECI	CCNNGG	1 cut(s)	628
BssMI	GATC	4 cut(s)	211, 453, 574, 601
BssT1I	CCWWGG	1 cut(s)	628
Bst2UI	CCWGG	2 cut(s)	209, 704
Bst4CI	ACNGT	2 cut(s)	427, 509
BstAPI	GCANNNNNTGC	1 cut(s)	124
BstDEI	CTNAG	5 cut(s)	312, 540, 584, 762, 774
BstF5I	GGATG	1 cut(s)	566
BstKTI	GATC	4 cut(s)	214, 456, 577, 604
BstMAI	GTCTC	2 cut(s)	46, 488
BstMBI	GATC	4 cut(s)	211, 453, 574, 601
BstMWI	GCNNNNNNNGC	2 cut(s)	124, 305
BstNI	CCWGG	2 cut(s)	209, 704
BstNSI	RCATGY	3 cut(s)	158, 192, 665
BstSCI	CCNGG	2 cut(s)	207, 702
BstSLI	GKGCMC	1 cut(s)	320
BstV1I	GCAGC	3 cut(s)	91, 749, 752
BstX2I	RGATCY	1 cut(s)	211
BstYI	RGATCY	1 cut(s)	211
BtsCI	GGATG	1 cut(s)	566
BtsIMutI	CAGTG	1 cut(s)	38
BveI	ACCTGC	2 cut(s)	64, 76
CaiI	CAGNNNCTG	1 cut(s)	743
Cfr13I	GGNCC	2 cut(s)	4, 695
CseI	GACGC	1 cut(s)	355
Csp6I	GTAC	4 cut(s)	20, 349, 419, 716
CviAII	CATG	7 cut(s)	119, 155, 189, 500, 662, 668, 722
CviJI	RGCY	6 cut(s)	239, 253, 473, 743, 755, 791
CviKI_1	RGCY	6 cut(s)	239, 253, 473, 743, 755, 791
CviQI	GTAC	4 cut(s)	20, 349, 419, 716
DdeI	CTNAG	5 cut(s)	312, 540, 584, 762, 774
DpnI	GATC	4 cut(s)	213, 455, 576, 603
DpnII	GATC	4 cut(s)	211, 453, 574, 601
Eco130I	CCWWGG	1 cut(s)	628
Eco31I	GGTCTC	2 cut(s)	46, 488
Eco47I	GGWCC	2 cut(s)	4, 695
Eco57I	CTGAAG	1 cut(s)	807
EcoRII	CCWGG	2 cut(s)	207, 702
EcoT14I	CCWWGG	1 cut(s)	628
ErhI	CCWWGG	1 cut(s)	628
FaeI	CATG	7 cut(s)	122, 158, 192, 503, 665, 671, 725
FaqI	GGGAC	1 cut(s)	143
FatI	CATG	7 cut(s)	118, 154, 188, 499, 661, 667, 721
FauNDI	CATATG	1 cut(s)	266
FbaI	TGATCA	1 cut(s)	601
Fnu4HI	GCNGC	3 cut(s)	105, 738, 741
FokI	GGATG	1 cut(s)	553
Fsp4HI	GCNGC	3 cut(s)	105, 738, 741
FspBI	CTAG	1 cut(s)	629
GluI	GCNGC	3 cut(s)	105, 738, 741
GsuI	CTGGAG	2 cut(s)	594, 725
HgaI	GACGC	1 cut(s)	355
Hin1II	CATG	7 cut(s)	122, 158, 192, 503, 665, 671, 725
HincII	GTYRAC	2 cut(s)	505, 643
HindII	GTYRAC	2 cut(s)	505, 643
HindIII	AAGCTT	1 cut(s)	789
HinfI	GANTC	1 cut(s)	131
HpaI	GTTAAC	1 cut(s)	643
HphI	GGTGA	1 cut(s)	503
Hpy166II	GTNNAC	3 cut(s)	7, 505, 643
Hpy188I	TCNGA	6 cut(s)	92, 151, 313, 543, 765, 787
Hpy188III	TCNNGA	4 cut(s)	476, 512, 611, 698
Hpy8I	GTNNAC	3 cut(s)	7, 505, 643
HpyAV	CCTTC	1 cut(s)	533
HpyCH4III	ACNGT	2 cut(s)	427, 509
HpyCH4V	TGCA	9 cut(s)	85, 107, 118, 224, 293, 308, 665, 737, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	124, 305
HpyF3I	CTNAG	5 cut(s)	312, 540, 584, 762, 774
Hsp92II	CATG	7 cut(s)	122, 158, 192, 503, 665, 671, 725
Ksp22I	TGATCA	1 cut(s)	601
KspAI	GTTAAC	1 cut(s)	643
Kzo9I	GATC	4 cut(s)	211, 453, 574, 601
LmnI	GCTCC	3 cut(s)	70, 568, 706
Lsp1109I	GCAGC	3 cut(s)	91, 749, 752
LweI	GCATC	3 cut(s)	280, 317, 686
MaeI	CTAG	1 cut(s)	629
MalI	GATC	4 cut(s)	213, 455, 576, 603
MboI	GATC	4 cut(s)	211, 453, 574, 601
MboII	GAAGA	1 cut(s)	175
MfeI	CAATTG	1 cut(s)	690
MflI	RGATCY	1 cut(s)	211
MhlI	GDGCHC	2 cut(s)	320, 711
MluCI	AATT	3 cut(s)	547, 690, 780
MmeI	TCCRAC	1 cut(s)	70
MnlI	CCTC	7 cut(s)	52, 205, 307, 437, 508, 729, 769
MseI	TTAA	2 cut(s)	429, 642
MslI	CAYNNNNRTG	1 cut(s)	666
MspA1I	CMGCKG	1 cut(s)	743
MspR9I	CCNGG	2 cut(s)	209, 704
MunI	CAATTG	1 cut(s)	690
MvaI	CCWGG	2 cut(s)	209, 704
MwoI	GCNNNNNNNGC	2 cut(s)	124, 305
NdeI	CATATG	1 cut(s)	266
NdeII	GATC	4 cut(s)	211, 453, 574, 601
NlaIII	CATG	7 cut(s)	122, 158, 192, 503, 665, 671, 725
NlaIV	GGNNCC	2 cut(s)	213, 727
NspI	RCATGY	3 cut(s)	158, 192, 665
PciI	ACATGT	1 cut(s)	154
PfeI	GAWTC	1 cut(s)	131
PflMI	CCANNNNNTGG	1 cut(s)	37
PkrI	GCNGC	3 cut(s)	106, 739, 742
PscI	ACATGT	1 cut(s)	154
Psp6I	CCWGG	2 cut(s)	207, 702
PspGI	CCWGG	2 cut(s)	207, 702
PspN4I	GGNNCC	2 cut(s)	213, 727
PspPI	GGNCC	2 cut(s)	4, 695
PstNI	CAGNNNCTG	1 cut(s)	743
PsuI	RGATCY	1 cut(s)	211
PvuII	CAGCTG	1 cut(s)	743
RsaI	GTAC	4 cut(s)	21, 350, 420, 717
RsaNI	GTAC	4 cut(s)	20, 349, 419, 716
RseI	CAYNNNNRTG	1 cut(s)	666
SaqAI	TTAA	2 cut(s)	429, 642
SatI	GCNGC	3 cut(s)	105, 738, 741
Sau3AI	GATC	4 cut(s)	211, 453, 574, 601
Sau96I	GGNCC	2 cut(s)	4, 695
ScrFI	CCNGG	2 cut(s)	209, 704
SduI	GDGCHC	2 cut(s)	320, 711
SfaNI	GCATC	3 cut(s)	280, 317, 686
SinI	GGWCC	2 cut(s)	4, 695
SmiMI	CAYNNNNRTG	1 cut(s)	666
SmlI	CTYRAG	1 cut(s)	476
SmoI	CTYRAG	1 cut(s)	476
Sse9I	AATT	3 cut(s)	547, 690, 780
SspMI	CTAG	1 cut(s)	629
StyD4I	CCNGG	2 cut(s)	207, 702
StyI	CCWWGG	1 cut(s)	628
TaaI	ACNGT	2 cut(s)	427, 509
TaqI	TCGA	2 cut(s)	591, 751
TasI	AATT	3 cut(s)	547, 690, 780
TatI	WGTACW	3 cut(s)	19, 348, 418
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	2 cut(s)	429, 642
Tru9I	TTAA	2 cut(s)	429, 642
TscAI	CASTG	1 cut(s)	38
TseI	GCWGC	3 cut(s)	104, 737, 740
TspGWI	ACGGA	1 cut(s)	83
TspRI	CASTG	1 cut(s)	38
Van91I	CCANNNNNTGG	1 cut(s)	37
VpaK11BI	GGWCC	2 cut(s)	4, 695
XapI	RAATTY	2 cut(s)	547, 780
XceI	RCATGY	3 cut(s)	158, 192, 665
XmaJI	CCTAGG	1 cut(s)	628
XspI	CTAG	1 cut(s)	629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.