Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3D

Orthogroup ID

OG0017031

Physical Location & Seq

Genomic Coordinates Reverse (-)

26502649 .. 26507883

Gene Structure 5235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3DG266000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 279 bp

ATGGTGGAGAGGTTACAAAGGTTTGCTCCATCCCCTGATCCATCACTAAGTAACGAGTTTTATGATCAAACTCTAGAGCAACAATCAGTCCTAGGGTATGTTGTTGACTCATCACAAACAGGACATGCTCATGATGTAGCATCAACAAATCCAATTAGTCCTGACCAGGAGCACAGAGTACCTTATGGTTCCATTGGTGCAGCAGCTGGTCATCGAGCCATTGCTCAGAGTAATGCTGAGGAAATTTCTGAAGCTTTGGTTCAATACTCTGCACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

92

Amino Acids

9.92

Weight (kDa)

4.59

Isoelectric Point (pI)

57.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017031)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023029
rosa_multiflora	Rmu_sc0002927.1_g000029 Rmu_sc0007339.1_g000003 Rmu_sc0009890.1_g000001 Rmu_sc0027862.1_g000001 Rmu_ssc0000155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058330
rosa_rugosa	Rorug05G0246100
rosa_samantha	Rh1AG088400 Rh3DG266000 Rh5CG151200 Rh5CG155200 Rh7CG392900 Rh7DG427800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	32
AcsI	RAATTY	1 cut(s)	243
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	263
AjnI	CCWGG	1 cut(s)	165
AluBI	AGCT	2 cut(s)	206, 254
AluI	AGCT	2 cut(s)	206, 254
Alw21I	GWGCWC	1 cut(s)	174
AlwI	GGATC	1 cut(s)	32
AlwNI	CAGNNNCTG	1 cut(s)	206
ApeKI	GCWGC	2 cut(s)	200, 203
ApoI	RAATTY	1 cut(s)	243
AspA2I	CCTAGG	1 cut(s)	91
AvrII	CCTAGG	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	174
BbvCI	CCTCAGC	1 cut(s)	237
BbvI	GCAGC	2 cut(s)	212, 215
BccI	CCATC	2 cut(s)	37, 49
BciT130I	CCWGG	1 cut(s)	167
BclI	TGATCA	1 cut(s)	64
BfaI	CTAG	2 cut(s)	74, 92
BisI	GCNGC	2 cut(s)	201, 204
BlnI	CCTAGG	1 cut(s)	91
BlsI	GCNGC	2 cut(s)	202, 205
Bme1390I	CCNGG	1 cut(s)	167
BmiI	GGNNCC	1 cut(s)	190
BmrFI	CCNGG	1 cut(s)	167
BmsI	GCATC	1 cut(s)	149
Bpu10I	CCTNAGC	1 cut(s)	237
BsaJI	CCNNGG	1 cut(s)	91
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	1 cut(s)	167
BseDI	CCNNGG	1 cut(s)	91
BseGI	GGATG	1 cut(s)	29
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	2 cut(s)	228, 239
BseXI	GCAGC	2 cut(s)	212, 215
BsgI	GTGCAG	2 cut(s)	219, 255
BsiHKAI	GWGCWC	1 cut(s)	174
Bsp1286I	GDGCHC	1 cut(s)	174
Bsp143I	GATC	2 cut(s)	37, 64
BspCNI	CTCAG	2 cut(s)	229, 238
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	1 cut(s)	190
BspPI	GGATC	1 cut(s)	32
BsrDI	GCAATG	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	91
BssMI	GATC	2 cut(s)	37, 64
BssT1I	CCWWGG	1 cut(s)	91
Bst2UI	CCWGG	1 cut(s)	167
BstDEI	CTNAG	3 cut(s)	47, 225, 237
BstF5I	GGATG	1 cut(s)	29
BstKTI	GATC	2 cut(s)	40, 67
BstMBI	GATC	2 cut(s)	37, 64
BstNI	CCWGG	1 cut(s)	167
BstNSI	RCATGY	1 cut(s)	128
BstSCI	CCNGG	1 cut(s)	165
BstV1I	GCAGC	2 cut(s)	212, 215
BtsCI	GGATG	1 cut(s)	29
CaiI	CAGNNNCTG	1 cut(s)	206
CciI	TCATGA	1 cut(s)	130
Csp6I	GTAC	1 cut(s)	179
CviAII	CATG	2 cut(s)	125, 131
CviJI	RGCY	3 cut(s)	206, 218, 254
CviKI_1	RGCY	3 cut(s)	206, 218, 254
CviQI	GTAC	1 cut(s)	179
DdeI	CTNAG	3 cut(s)	47, 225, 237
DpnI	GATC	2 cut(s)	39, 66
DpnII	GATC	2 cut(s)	37, 64
Eco130I	CCWWGG	1 cut(s)	91
Eco57I	CTGAAG	1 cut(s)	270
EcoRII	CCWGG	1 cut(s)	165
EcoT14I	CCWWGG	1 cut(s)	91
ErhI	CCWWGG	1 cut(s)	91
FaeI	CATG	2 cut(s)	128, 134
FaiI	YATR	6 cut(s)	63, 99, 126, 132, 186, 277
FatI	CATG	2 cut(s)	124, 130
FbaI	TGATCA	1 cut(s)	64
Fnu4HI	GCNGC	2 cut(s)	201, 204
FokI	GGATG	1 cut(s)	16
Fsp4HI	GCNGC	2 cut(s)	201, 204
FspBI	CTAG	2 cut(s)	74, 92
GluI	GCNGC	2 cut(s)	201, 204
Hin1II	CATG	2 cut(s)	128, 134
HincII	GTYRAC	1 cut(s)	106
HindII	GTYRAC	1 cut(s)	106
HindIII	AAGCTT	1 cut(s)	252
HinfI	GANTC	1 cut(s)	107
Hpy166II	GTNNAC	1 cut(s)	106
Hpy188I	TCNGA	2 cut(s)	228, 250
Hpy188III	TCNNGA	3 cut(s)	74, 131, 161
Hpy8I	GTNNAC	1 cut(s)	106
HpyCH4V	TGCA	2 cut(s)	200, 272
HpyF3I	CTNAG	3 cut(s)	47, 225, 237
Hsp92II	CATG	2 cut(s)	128, 134
Ksp22I	TGATCA	1 cut(s)	64
Kzo9I	GATC	2 cut(s)	37, 64
LmnI	GCTCC	2 cut(s)	31, 169
LpnPI	CCDG	6 cut(s)	48, 105, 152, 174, 179, 192
Lsp1109I	GCAGC	2 cut(s)	212, 215
LweI	GCATC	1 cut(s)	149
MaeI	CTAG	2 cut(s)	74, 92
MaeIII	GTNAC	2 cut(s)	12, 50
MalI	GATC	2 cut(s)	39, 66
MboI	GATC	2 cut(s)	37, 64
MhlI	GDGCHC	1 cut(s)	174
MluCI	AATT	2 cut(s)	153, 243
MlyI	GAGTC	1 cut(s)	101
MnlI	CCTC	2 cut(s)	3, 232
MslI	CAYNNNNRTG	1 cut(s)	129
MspA1I	CMGCKG	1 cut(s)	206
MspR9I	CCNGG	1 cut(s)	167
MvaI	CCWGG	1 cut(s)	167
NdeII	GATC	2 cut(s)	37, 64
NlaIII	CATG	2 cut(s)	128, 134
NlaIV	GGNNCC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	128
PagI	TCATGA	1 cut(s)	130
PkrI	GCNGC	2 cut(s)	202, 205
PleI	GAGTC	1 cut(s)	101
PpsI	GAGTC	1 cut(s)	101
Psp6I	CCWGG	1 cut(s)	165
PspGI	CCWGG	1 cut(s)	165
PspN4I	GGNNCC	1 cut(s)	190
PstNI	CAGNNNCTG	1 cut(s)	206
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	180
RsaNI	GTAC	1 cut(s)	179
RseI	CAYNNNNRTG	1 cut(s)	129
SatI	GCNGC	2 cut(s)	201, 204
Sau3AI	GATC	2 cut(s)	37, 64
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	167
SduI	GDGCHC	1 cut(s)	174
SetI	ASST	5 cut(s)	14, 23, 184, 208, 256
SfaNI	GCATC	1 cut(s)	149
SmiMI	CAYNNNNRTG	1 cut(s)	129
Sse9I	AATT	2 cut(s)	153, 243
SspMI	CTAG	2 cut(s)	74, 92
StyD4I	CCNGG	1 cut(s)	165
StyI	CCWWGG	1 cut(s)	91
TaqI	TCGA	1 cut(s)	214
TasI	AATT	2 cut(s)	153, 243
TseI	GCWGC	2 cut(s)	200, 203
XapI	RAATTY	1 cut(s)	243
XbaI	TCTAGA	1 cut(s)	73
XceI	RCATGY	1 cut(s)	128
XmaJI	CCTAGG	1 cut(s)	91
XspI	CTAG	2 cut(s)	74, 92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.