Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0017031

Physical Location & Seq

Genomic Coordinates Forward (+)

60465929 .. 60466252

Gene Structure 324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG427800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGGATTTTGGATCATTCATTGTCAGACTGTCCAGTGACCGAGGATATAAATTTCATCTGATCAGGTTTGCTCCATCCCCTTATCCATCACTAAGTATCGAGTTTTATGATCAAACTCTAGAGCAACAATCAGTCCTAGGGTATGTTGTTGACTCATCACAAACAGGACATGCTCATGATGTAGCATCAACAAATCCAATTGGTCCTGACCAGGAGCACAGAGTACCTCATGGTTCCATTGGTGCAGCAGCTGGTCATCGAGCCATTGCTCAGAGTAATGCTGAGGAAATTTCTGAAGCTTTGGTTCAATACTCTGCACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

107

Amino Acids

11.63

Weight (kDa)

5.31

Isoelectric Point (pI)

47.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017031)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023029
rosa_multiflora	Rmu_sc0002927.1_g000029 Rmu_sc0007339.1_g000003 Rmu_sc0009890.1_g000001 Rmu_sc0027862.1_g000001 Rmu_ssc0000155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058330
rosa_rugosa	Rorug05G0246100
rosa_samantha	Rh1AG088400 Rh3DG266000 Rh5CG151200 Rh5CG155200 Rh7CG392900 Rh7DG427800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	19
AcsI	RAATTY	2 cut(s)	50, 288
AcuI	CTGAAG	1 cut(s)	315
AfaI	GTAC	1 cut(s)	225
AgsI	TTSAA	1 cut(s)	308
AjnI	CCWGG	1 cut(s)	210
AluBI	AGCT	2 cut(s)	251, 299
AluI	AGCT	2 cut(s)	251, 299
Alw21I	GWGCWC	1 cut(s)	219
AlwI	GGATC	1 cut(s)	19
AlwNI	CAGNNNCTG	1 cut(s)	251
ApeKI	GCWGC	2 cut(s)	245, 248
ApoI	RAATTY	2 cut(s)	50, 288
AspA2I	CCTAGG	1 cut(s)	136
AspS9I	GGNCC	1 cut(s)	203
AvaII	GGWCC	1 cut(s)	203
AvrII	CCTAGG	1 cut(s)	136
Bbv12I	GWGCWC	1 cut(s)	219
BbvCI	CCTCAGC	1 cut(s)	282
BbvI	GCAGC	2 cut(s)	257, 260
BccI	CCATC	2 cut(s)	82, 94
BciT130I	CCWGG	1 cut(s)	212
BclI	TGATCA	2 cut(s)	60, 109
BfaI	CTAG	2 cut(s)	119, 137
BisI	GCNGC	2 cut(s)	246, 249
BlnI	CCTAGG	1 cut(s)	136
BlsI	GCNGC	2 cut(s)	247, 250
Bme1390I	CCNGG	1 cut(s)	212
Bme18I	GGWCC	1 cut(s)	203
BmgT120I	GGNCC	1 cut(s)	203
BmiI	GGNNCC	1 cut(s)	235
BmrFI	CCNGG	1 cut(s)	212
BmsI	GCATC	1 cut(s)	194
Bpu10I	CCTNAGC	1 cut(s)	282
BsaJI	CCNNGG	2 cut(s)	40, 136
Bse1I	ACTGG	1 cut(s)	33
Bse3DI	GCAATG	1 cut(s)	264
BseBI	CCWGG	1 cut(s)	212
BseDI	CCNNGG	2 cut(s)	40, 136
BseGI	GGATG	1 cut(s)	74
BseMI	GCAATG	1 cut(s)	264
BseMII	CTCAG	2 cut(s)	273, 284
BseNI	ACTGG	1 cut(s)	33
BseXI	GCAGC	2 cut(s)	257, 260
BsgI	GTGCAG	2 cut(s)	264, 300
BsiHKAI	GWGCWC	1 cut(s)	219
Bsp1286I	GDGCHC	1 cut(s)	219
Bsp143I	GATC	3 cut(s)	11, 60, 109
BspCNI	CTCAG	2 cut(s)	274, 283
BspHI	TCATGA	1 cut(s)	175
BspLI	GGNNCC	1 cut(s)	235
BspPI	GGATC	1 cut(s)	19
BsrDI	GCAATG	1 cut(s)	264
BsrI	ACTGG	1 cut(s)	33
BssECI	CCNNGG	2 cut(s)	40, 136
BssMI	GATC	3 cut(s)	11, 60, 109
BssT1I	CCWWGG	1 cut(s)	136
Bst2UI	CCWGG	1 cut(s)	212
Bst4CI	ACNGT	1 cut(s)	30
BstDEI	CTNAG	3 cut(s)	92, 270, 282
BstF5I	GGATG	1 cut(s)	74
BstKTI	GATC	3 cut(s)	14, 63, 112
BstMBI	GATC	3 cut(s)	11, 60, 109
BstNI	CCWGG	1 cut(s)	212
BstNSI	RCATGY	1 cut(s)	173
BstSCI	CCNGG	1 cut(s)	210
BstV1I	GCAGC	2 cut(s)	257, 260
BtsCI	GGATG	1 cut(s)	74
BtsIMutI	CAGTG	1 cut(s)	40
CaiI	CAGNNNCTG	1 cut(s)	251
CciI	TCATGA	1 cut(s)	175
Cfr13I	GGNCC	1 cut(s)	203
Csp6I	GTAC	1 cut(s)	224
CviAII	CATG	3 cut(s)	170, 176, 230
CviJI	RGCY	3 cut(s)	251, 263, 299
CviKI_1	RGCY	3 cut(s)	251, 263, 299
CviQI	GTAC	1 cut(s)	224
DdeI	CTNAG	3 cut(s)	92, 270, 282
DpnI	GATC	3 cut(s)	13, 62, 111
DpnII	GATC	3 cut(s)	11, 60, 109
Eco130I	CCWWGG	1 cut(s)	136
Eco47I	GGWCC	1 cut(s)	203
Eco57I	CTGAAG	1 cut(s)	315
EcoRII	CCWGG	1 cut(s)	210
EcoT14I	CCWWGG	1 cut(s)	136
ErhI	CCWWGG	1 cut(s)	136
FaeI	CATG	3 cut(s)	173, 179, 233
FaiI	YATR	7 cut(s)	48, 108, 144, 171, 177, 231, 322
FatI	CATG	3 cut(s)	169, 175, 229
FbaI	TGATCA	2 cut(s)	60, 109
Fnu4HI	GCNGC	2 cut(s)	246, 249
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	2 cut(s)	246, 249
FspBI	CTAG	2 cut(s)	119, 137
GluI	GCNGC	2 cut(s)	246, 249
Hin1II	CATG	3 cut(s)	173, 179, 233
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HindIII	AAGCTT	1 cut(s)	297
HinfI	GANTC	1 cut(s)	152
Hpy166II	GTNNAC	1 cut(s)	151
Hpy188I	TCNGA	4 cut(s)	26, 60, 273, 295
Hpy188III	TCNNGA	3 cut(s)	119, 176, 206
Hpy8I	GTNNAC	1 cut(s)	151
HpyCH4III	ACNGT	1 cut(s)	30
HpyCH4V	TGCA	2 cut(s)	245, 317
HpyF3I	CTNAG	3 cut(s)	92, 270, 282
Hsp92II	CATG	3 cut(s)	173, 179, 233
Ksp22I	TGATCA	2 cut(s)	60, 109
Kzo9I	GATC	3 cut(s)	11, 60, 109
LmnI	GCTCC	2 cut(s)	76, 214
LpnPI	CCDG	7 cut(s)	46, 49, 150, 197, 219, 224, 237
Lsp1109I	GCAGC	2 cut(s)	257, 260
LweI	GCATC	1 cut(s)	194
MaeI	CTAG	2 cut(s)	119, 137
MaeIII	GTNAC	1 cut(s)	35
MalI	GATC	3 cut(s)	13, 62, 111
MboI	GATC	3 cut(s)	11, 60, 109
MfeI	CAATTG	1 cut(s)	198
MhlI	GDGCHC	1 cut(s)	219
MluCI	AATT	3 cut(s)	50, 198, 288
MlyI	GAGTC	1 cut(s)	146
MnlI	CCTC	3 cut(s)	35, 237, 277
MslI	CAYNNNNRTG	1 cut(s)	174
MspA1I	CMGCKG	1 cut(s)	251
MspR9I	CCNGG	1 cut(s)	212
MunI	CAATTG	1 cut(s)	198
MvaI	CCWGG	1 cut(s)	212
NdeII	GATC	3 cut(s)	11, 60, 109
NlaIII	CATG	3 cut(s)	173, 179, 233
NlaIV	GGNNCC	1 cut(s)	235
NmuCI	GTSAC	1 cut(s)	35
NspI	RCATGY	1 cut(s)	173
PagI	TCATGA	1 cut(s)	175
PkrI	GCNGC	2 cut(s)	247, 250
PleI	GAGTC	1 cut(s)	146
PpsI	GAGTC	1 cut(s)	146
Psp6I	CCWGG	1 cut(s)	210
PspGI	CCWGG	1 cut(s)	210
PspN4I	GGNNCC	1 cut(s)	235
PspPI	GGNCC	1 cut(s)	203
PstNI	CAGNNNCTG	1 cut(s)	251
PvuII	CAGCTG	1 cut(s)	251
RsaI	GTAC	1 cut(s)	225
RsaNI	GTAC	1 cut(s)	224
RseI	CAYNNNNRTG	1 cut(s)	174
SatI	GCNGC	2 cut(s)	246, 249
Sau3AI	GATC	3 cut(s)	11, 60, 109
Sau96I	GGNCC	1 cut(s)	203
SchI	GAGTC	1 cut(s)	146
ScrFI	CCNGG	1 cut(s)	212
SduI	GDGCHC	1 cut(s)	219
SetI	ASST	4 cut(s)	68, 229, 253, 301
SfaNI	GCATC	1 cut(s)	194
SinI	GGWCC	1 cut(s)	203
SmiMI	CAYNNNNRTG	1 cut(s)	174
Sse9I	AATT	3 cut(s)	50, 198, 288
SspMI	CTAG	2 cut(s)	119, 137
StyD4I	CCNGG	1 cut(s)	210
StyI	CCWWGG	1 cut(s)	136
TaaI	ACNGT	1 cut(s)	30
TaqI	TCGA	2 cut(s)	99, 259
TaqII	GACCGA	1 cut(s)	54
TasI	AATT	3 cut(s)	50, 198, 288
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	1 cut(s)	35
TseI	GCWGC	2 cut(s)	245, 248
Tsp45I	GTSAC	1 cut(s)	35
TspDTI	ATGAA	2 cut(s)	7, 44
TspRI	CASTG	1 cut(s)	40
VpaK11BI	GGWCC	1 cut(s)	203
XapI	RAATTY	2 cut(s)	50, 288
XbaI	TCTAGA	1 cut(s)	118
XceI	RCATGY	1 cut(s)	173
XmaJI	CCTAGG	1 cut(s)	136
XspI	CTAG	2 cut(s)	119, 137

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.