Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027862.1

Orthogroup ID

OG0017031

Physical Location & Seq

Genomic Coordinates Reverse (-)

688 .. 984

Gene Structure 297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027862.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 297 bp

ctgtccagtgaccgaggatataaatttcatctgatcaggtttgctccatccccttatccatcactaagtatcgagttttatgatcaaaatctagagcaacaatcagtcctagggtatgttgttgactcatcacaaacaggacatgctcatgatgtagcatcaacaaatccaattggtcctgaccaggagcacagagtacctcatggttccattggtgcagcagctggtcatcgagccattgctcagagtaatgctgaggaaatttctgaagctttggttcaatactctgcaccatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

98

Amino Acids

10.59

Weight (kDa)

5.3

Isoelectric Point (pI)

52.98

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017031)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023029
rosa_multiflora	Rmu_sc0002927.1_g000029 Rmu_sc0007339.1_g000003 Rmu_sc0009890.1_g000001 Rmu_sc0027862.1_g000001 Rmu_ssc0000155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058330
rosa_rugosa	Rorug05G0246100
rosa_samantha	Rh1AG088400 Rh3DG266000 Rh5CG151200 Rh5CG155200 Rh7CG392900 Rh7DG427800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	2 cut(s)	23, 261
AcuI	CTGAAG	1 cut(s)	288
AfaI	GTAC	1 cut(s)	198
AgsI	TTSAA	1 cut(s)	281
AjnI	CCWGG	1 cut(s)	183
AluBI	AGCT	2 cut(s)	224, 272
AluI	AGCT	2 cut(s)	224, 272
Alw21I	GWGCWC	1 cut(s)	192
AlwNI	CAGNNNCTG	1 cut(s)	224
ApeKI	GCWGC	2 cut(s)	218, 221
ApoI	RAATTY	2 cut(s)	23, 261
AspA2I	CCTAGG	1 cut(s)	109
AspS9I	GGNCC	1 cut(s)	176
AvaII	GGWCC	1 cut(s)	176
AvrII	CCTAGG	1 cut(s)	109
Bbv12I	GWGCWC	1 cut(s)	192
BbvCI	CCTCAGC	1 cut(s)	255
BbvI	GCAGC	2 cut(s)	230, 233
BccI	CCATC	2 cut(s)	55, 67
BciT130I	CCWGG	1 cut(s)	185
BclI	TGATCA	2 cut(s)	33, 82
BfaI	CTAG	2 cut(s)	92, 110
BisI	GCNGC	2 cut(s)	219, 222
BlnI	CCTAGG	1 cut(s)	109
BlsI	GCNGC	2 cut(s)	220, 223
Bme1390I	CCNGG	1 cut(s)	185
Bme18I	GGWCC	1 cut(s)	176
BmgT120I	GGNCC	1 cut(s)	176
BmiI	GGNNCC	1 cut(s)	208
BmrFI	CCNGG	1 cut(s)	185
BmsI	GCATC	1 cut(s)	167
Bpu10I	CCTNAGC	1 cut(s)	255
BsaBI	GATNNNNATC	1 cut(s)	87
BsaJI	CCNNGG	2 cut(s)	13, 109
Bse1I	ACTGG	1 cut(s)	6
Bse3DI	GCAATG	1 cut(s)	237
Bse8I	GATNNNNATC	1 cut(s)	87
BseBI	CCWGG	1 cut(s)	185
BseDI	CCNNGG	2 cut(s)	13, 109
BseGI	GGATG	1 cut(s)	47
BseJI	GATNNNNATC	1 cut(s)	87
BseMI	GCAATG	1 cut(s)	237
BseMII	CTCAG	2 cut(s)	246, 257
BseNI	ACTGG	1 cut(s)	6
BseXI	GCAGC	2 cut(s)	230, 233
BsgI	GTGCAG	2 cut(s)	237, 273
BsiHKAI	GWGCWC	1 cut(s)	192
Bsp1286I	GDGCHC	1 cut(s)	192
Bsp143I	GATC	2 cut(s)	33, 82
BspCNI	CTCAG	2 cut(s)	247, 256
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	208
BsrDI	GCAATG	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	6
BssECI	CCNNGG	2 cut(s)	13, 109
BssMI	GATC	2 cut(s)	33, 82
BssT1I	CCWWGG	1 cut(s)	109
Bst2UI	CCWGG	1 cut(s)	185
BstDEI	CTNAG	3 cut(s)	65, 243, 255
BstF5I	GGATG	1 cut(s)	47
BstKTI	GATC	2 cut(s)	36, 85
BstMBI	GATC	2 cut(s)	33, 82
BstNI	CCWGG	1 cut(s)	185
BstNSI	RCATGY	1 cut(s)	146
BstSCI	CCNGG	1 cut(s)	183
BstV1I	GCAGC	2 cut(s)	230, 233
BtsCI	GGATG	1 cut(s)	47
BtsIMutI	CAGTG	1 cut(s)	13
CaiI	CAGNNNCTG	1 cut(s)	224
CciI	TCATGA	1 cut(s)	148
Cfr13I	GGNCC	1 cut(s)	176
Csp6I	GTAC	1 cut(s)	197
CviAII	CATG	3 cut(s)	143, 149, 203
CviJI	RGCY	3 cut(s)	224, 236, 272
CviKI_1	RGCY	3 cut(s)	224, 236, 272
CviQI	GTAC	1 cut(s)	197
DdeI	CTNAG	3 cut(s)	65, 243, 255
DpnI	GATC	2 cut(s)	35, 84
DpnII	GATC	2 cut(s)	33, 82
Eco130I	CCWWGG	1 cut(s)	109
Eco47I	GGWCC	1 cut(s)	176
Eco57I	CTGAAG	1 cut(s)	288
EcoRII	CCWGG	1 cut(s)	183
EcoT14I	CCWWGG	1 cut(s)	109
ErhI	CCWWGG	1 cut(s)	109
FaeI	CATG	3 cut(s)	146, 152, 206
FaiI	YATR	7 cut(s)	21, 81, 117, 144, 150, 204, 295
FatI	CATG	3 cut(s)	142, 148, 202
FbaI	TGATCA	2 cut(s)	33, 82
Fnu4HI	GCNGC	2 cut(s)	219, 222
FokI	GGATG	1 cut(s)	34
Fsp4HI	GCNGC	2 cut(s)	219, 222
FspBI	CTAG	2 cut(s)	92, 110
GluI	GCNGC	2 cut(s)	219, 222
Hin1II	CATG	3 cut(s)	146, 152, 206
HincII	GTYRAC	1 cut(s)	124
HindII	GTYRAC	1 cut(s)	124
HindIII	AAGCTT	1 cut(s)	270
HinfI	GANTC	1 cut(s)	125
Hpy166II	GTNNAC	1 cut(s)	124
Hpy188I	TCNGA	3 cut(s)	33, 246, 268
Hpy188III	TCNNGA	3 cut(s)	92, 149, 179
Hpy8I	GTNNAC	1 cut(s)	124
HpyCH4V	TGCA	2 cut(s)	218, 290
HpyF3I	CTNAG	3 cut(s)	65, 243, 255
Hsp92II	CATG	3 cut(s)	146, 152, 206
Ksp22I	TGATCA	2 cut(s)	33, 82
Kzo9I	GATC	2 cut(s)	33, 82
LmnI	GCTCC	2 cut(s)	49, 187
LpnPI	CCDG	7 cut(s)	19, 22, 123, 170, 192, 197, 210
Lsp1109I	GCAGC	2 cut(s)	230, 233
LweI	GCATC	1 cut(s)	167
MaeI	CTAG	2 cut(s)	92, 110
MaeIII	GTNAC	1 cut(s)	8
MalI	GATC	2 cut(s)	35, 84
MboI	GATC	2 cut(s)	33, 82
MfeI	CAATTG	1 cut(s)	171
MhlI	GDGCHC	1 cut(s)	192
MluCI	AATT	3 cut(s)	23, 171, 261
MlyI	GAGTC	1 cut(s)	119
MnlI	CCTC	3 cut(s)	8, 210, 250
MslI	CAYNNNNRTG	1 cut(s)	147
MspA1I	CMGCKG	1 cut(s)	224
MspR9I	CCNGG	1 cut(s)	185
MunI	CAATTG	1 cut(s)	171
MvaI	CCWGG	1 cut(s)	185
NdeII	GATC	2 cut(s)	33, 82
NlaIII	CATG	3 cut(s)	146, 152, 206
NlaIV	GGNNCC	1 cut(s)	208
NmuCI	GTSAC	1 cut(s)	8
NspI	RCATGY	1 cut(s)	146
PagI	TCATGA	1 cut(s)	148
PkrI	GCNGC	2 cut(s)	220, 223
PleI	GAGTC	1 cut(s)	119
PpsI	GAGTC	1 cut(s)	119
Psp6I	CCWGG	1 cut(s)	183
PspGI	CCWGG	1 cut(s)	183
PspN4I	GGNNCC	1 cut(s)	208
PspPI	GGNCC	1 cut(s)	176
PstNI	CAGNNNCTG	1 cut(s)	224
PvuII	CAGCTG	1 cut(s)	224
RsaI	GTAC	1 cut(s)	198
RsaNI	GTAC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	147
SatI	GCNGC	2 cut(s)	219, 222
Sau3AI	GATC	2 cut(s)	33, 82
Sau96I	GGNCC	1 cut(s)	176
SchI	GAGTC	1 cut(s)	119
ScrFI	CCNGG	1 cut(s)	185
SduI	GDGCHC	1 cut(s)	192
SetI	ASST	4 cut(s)	41, 202, 226, 274
SfaNI	GCATC	1 cut(s)	167
SinI	GGWCC	1 cut(s)	176
SmiMI	CAYNNNNRTG	1 cut(s)	147
Sse9I	AATT	3 cut(s)	23, 171, 261
SspMI	CTAG	2 cut(s)	92, 110
StyD4I	CCNGG	1 cut(s)	183
StyI	CCWWGG	1 cut(s)	109
TaqI	TCGA	2 cut(s)	72, 232
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	3 cut(s)	23, 171, 261
TscAI	CASTG	1 cut(s)	13
TseFI	GTSAC	1 cut(s)	8
TseI	GCWGC	2 cut(s)	218, 221
Tsp45I	GTSAC	1 cut(s)	8
TspDTI	ATGAA	1 cut(s)	17
TspRI	CASTG	1 cut(s)	13
VpaK11BI	GGWCC	1 cut(s)	176
XapI	RAATTY	2 cut(s)	23, 261
XbaI	TCTAGA	1 cut(s)	91
XceI	RCATGY	1 cut(s)	146
XmaJI	CCTAGG	1 cut(s)	109
XspI	CTAG	2 cut(s)	92, 110

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.