Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0017031

Physical Location & Seq

Genomic Coordinates Forward (+)

14407086 .. 14409052

Gene Structure 1967 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG155200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGGAGAGCAGTGAAGAAGAGGACGATCTCCCACTCATAGAGAGCATCACTTCCCAGTCCAAAGTCGACTTTCTTAACCAATCCCACGCCGAAAAGGGGTTCTTAAGGGCTGGGAATTATAACCTATACATACTCGTATATATCTCCCGCTTTTGCTGTGACATGCGCTCAGAACTGGAGCCTGGAGCCTCAAGTCTGAAGCCTGAAGAGAGCAAAGCTAAAGCAGTCTTAAAATGGAGAGTAGTGAAGGAGAAGAGGTTTGCTCCATCCCCTGATCCATCACTAAGTATTGAGTTTTATGAGCAAACTCCAGAGCAACAATCAGTGTTAGGGTATGTTGTTGACTCCTCACAAACAGGACATGCTCATGATGTAGCATCAACGAATCCAATTGGTCCTGACCAGGAGCAAAGAGTACCTCATGGTTCCATTGGTGCAGCAGCTGGTCATCGAGCCATTTCTCAGAGTAATGCTGAGAAAATTTCTGAAGCTTTGTTTCAATACTCTGCACCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000086 GO:0000278 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006950 GO:0007049 GO:0007154 GO:0008150 GO:0009267 GO:0009605 GO:0009743 GO:0009746 GO:0009749 GO:0009987 GO:0009991 GO:0010033 GO:0022402 GO:0031667 GO:0031668 GO:0031669 GO:0033554 GO:0034284 GO:0042221 GO:0042594 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0044770 GO:0044772 GO:0044839 GO:0050896 GO:0051716 GO:0061770 GO:0071496 GO:1901700 GO:1903047

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

zf-ZPR1

Protein Analysis

171

Amino Acids

18.86

Weight (kDa)

5.01

Isoelectric Point (pI)

62.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0017031)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000023029
rosa_multiflora	Rmu_sc0002927.1_g000029 Rmu_sc0007339.1_g000003 Rmu_sc0009890.1_g000001 Rmu_sc0027862.1_g000001 Rmu_ssc0000155.1_g000001
rosa_roxburghii	Rroxscaffold_1G00058330
rosa_rugosa	Rorug05G0246100
rosa_samantha	Rh1AG088400 Rh3DG266000 Rh5CG151200 Rh5CG155200 Rh7CG392900 Rh7DG427800

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AccI	GTMKAC	1 cut(s)	66
AciI	CCGC	1 cut(s)	148
AclWI	GGATC	1 cut(s)	269
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	3 cut(s)	218, 225, 507
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	1 cut(s)	96
AflII	CTTAAG	1 cut(s)	103
AgsI	TTSAA	1 cut(s)	500
AjnI	CCWGG	2 cut(s)	181, 402
AluBI	AGCT	3 cut(s)	218, 443, 491
AluI	AGCT	3 cut(s)	218, 443, 491
AlwI	GGATC	1 cut(s)	269
AlwNI	CAGNNNCTG	1 cut(s)	443
ApeKI	GCWGC	2 cut(s)	437, 440
ApoI	RAATTY	1 cut(s)	480
AspLEI	GCGC	1 cut(s)	168
AspS9I	GGNCC	1 cut(s)	395
AvaII	GGWCC	1 cut(s)	395
BbvI	GCAGC	2 cut(s)	449, 452
BccI	CCATC	2 cut(s)	274, 286
BciT130I	CCWGG	2 cut(s)	183, 404
BfrI	CTTAAG	1 cut(s)	103
BisI	GCNGC	2 cut(s)	438, 441
BlsI	GCNGC	2 cut(s)	439, 442
Bme1390I	CCNGG	2 cut(s)	183, 404
Bme18I	GGWCC	1 cut(s)	395
BmgT120I	GGNCC	1 cut(s)	395
BmiI	GGNNCC	3 cut(s)	180, 187, 427
BmrFI	CCNGG	2 cut(s)	183, 404
BmrI	ACTGGG	1 cut(s)	49
BmsI	GCATC	2 cut(s)	54, 386
BmuI	ACTGGG	1 cut(s)	49
BplI	GAGNNNNNCTC	2 cut(s)	247, 279
BpmI	CTGGAG	3 cut(s)	197, 204, 294
BpuEI	CTTGAG	1 cut(s)	175
BsaXI	ACNNNNNCTCC	2 cut(s)	242, 272
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	2 cut(s)	55, 180
BseBI	CCWGG	2 cut(s)	183, 404
BseGI	GGATG	1 cut(s)	266
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMII	CTCAG	3 cut(s)	183, 465, 476
BseNI	ACTGG	2 cut(s)	55, 180
BseRI	GAGGAG	1 cut(s)	337
BseXI	GCAGC	2 cut(s)	449, 452
BseYI	CCCAGC	1 cut(s)	110
BsgI	GTGCAG	2 cut(s)	456, 492
BslI	CCNNNNNNNGG	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	25, 274
BspACI	CCGC	1 cut(s)	148
BspCNI	CTCAG	3 cut(s)	182, 466, 475
BspHI	TCATGA	1 cut(s)	367
BspLI	GGNNCC	3 cut(s)	180, 187, 427
BspPI	GGATC	1 cut(s)	269
BspTI	CTTAAG	1 cut(s)	103
BsrI	ACTGG	2 cut(s)	55, 180
BssMI	GATC	2 cut(s)	25, 274
Bst2UI	CCWGG	2 cut(s)	183, 404
Bst6I	CTCTTC	3 cut(s)	12, 201, 248
BstAFI	CTTAAG	1 cut(s)	103
BstDEI	CTNAG	4 cut(s)	169, 284, 462, 474
BstF5I	GGATG	1 cut(s)	266
BstHHI	GCGC	1 cut(s)	168
BstKTI	GATC	2 cut(s)	28, 277
BstMBI	GATC	2 cut(s)	25, 274
BstNI	CCWGG	2 cut(s)	183, 404
BstNSI	RCATGY	2 cut(s)	166, 365
BstSCI	CCNGG	2 cut(s)	181, 402
BstV1I	GCAGC	2 cut(s)	449, 452
BtsCI	GGATG	1 cut(s)	266
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 330
CaiI	CAGNNNCTG	1 cut(s)	443
CciI	TCATGA	1 cut(s)	367
CfoI	GCGC	1 cut(s)	168
Cfr13I	GGNCC	1 cut(s)	395
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	4 cut(s)	163, 362, 368, 422
CviJI	RGCY	8 cut(s)	110, 181, 188, 202, 218, 443, 455, 491
CviKI_1	RGCY	8 cut(s)	110, 181, 188, 202, 218, 443, 455, 491
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	4 cut(s)	169, 284, 462, 474
DpnI	GATC	2 cut(s)	27, 276
DpnII	GATC	2 cut(s)	25, 274
Eam1104I	CTCTTC	3 cut(s)	12, 201, 248
EarI	CTCTTC	3 cut(s)	12, 201, 248
Eco47I	GGWCC	1 cut(s)	395
Eco57I	CTGAAG	3 cut(s)	218, 225, 507
EcoRII	CCWGG	2 cut(s)	181, 402
FaeI	CATG	4 cut(s)	166, 365, 371, 425
FalI	AAGNNNNNCTT	2 cut(s)	86, 118
FatI	CATG	4 cut(s)	162, 361, 367, 421
FauI	CCCGC	1 cut(s)	155
FblI	GTMKAC	1 cut(s)	66
Fnu4HI	GCNGC	2 cut(s)	438, 441
FokI	GGATG	1 cut(s)	253
Fsp4HI	GCNGC	2 cut(s)	438, 441
GlaI	GCGC	1 cut(s)	167
GluI	GCNGC	2 cut(s)	438, 441
GsaI	CCCAGC	1 cut(s)	114
GsuI	CTGGAG	3 cut(s)	197, 204, 294
HhaI	GCGC	1 cut(s)	168
Hin1II	CATG	4 cut(s)	166, 365, 371, 425
Hin6I	GCGC	1 cut(s)	166
HinP1I	GCGC	1 cut(s)	166
HincII	GTYRAC	2 cut(s)	67, 343
HindII	GTYRAC	2 cut(s)	67, 343
HindIII	AAGCTT	1 cut(s)	489
HinfI	GANTC	2 cut(s)	344, 385
Hpy166II	GTNNAC	2 cut(s)	67, 343
Hpy188I	TCNGA	4 cut(s)	172, 198, 465, 487
Hpy188III	TCNNGA	3 cut(s)	311, 368, 398
Hpy8I	GTNNAC	2 cut(s)	67, 343
HpyAV	CCTTC	1 cut(s)	241
HpyCH4V	TGCA	2 cut(s)	437, 509
HpyF3I	CTNAG	4 cut(s)	169, 284, 462, 474
Hsp92II	CATG	4 cut(s)	166, 365, 371, 425
HspAI	GCGC	1 cut(s)	166
Kzo9I	GATC	2 cut(s)	25, 274
LmnI	GCTCC	4 cut(s)	178, 185, 268, 406
Lsp1109I	GCAGC	2 cut(s)	449, 452
LweI	GCATC	2 cut(s)	54, 386
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	2 cut(s)	27, 276
MboI	GATC	2 cut(s)	25, 274
MboII	GAAGA	4 cut(s)	26, 29, 218, 265
MfeI	CAATTG	1 cut(s)	390
MluCI	AATT	3 cut(s)	115, 390, 480
MlyI	GAGTC	1 cut(s)	338
MnlI	CCTC	5 cut(s)	13, 199, 249, 358, 429
MseI	TTAA	3 cut(s)	75, 104, 230
MslI	CAYNNNNRTG	1 cut(s)	366
MspA1I	CMGCKG	1 cut(s)	443
MspCI	CTTAAG	1 cut(s)	103
MspR9I	CCNGG	2 cut(s)	183, 404
MunI	CAATTG	1 cut(s)	390
MvaI	CCWGG	2 cut(s)	183, 404
NdeII	GATC	2 cut(s)	25, 274
NlaIII	CATG	4 cut(s)	166, 365, 371, 425
NlaIV	GGNNCC	3 cut(s)	180, 187, 427
NmuCI	GTSAC	1 cut(s)	158
NspI	RCATGY	2 cut(s)	166, 365
PagI	TCATGA	1 cut(s)	367
PfeI	GAWTC	1 cut(s)	385
PkrI	GCNGC	2 cut(s)	439, 442
PleI	GAGTC	1 cut(s)	338
PpsI	GAGTC	1 cut(s)	338
PsiI	TTATAA	1 cut(s)	120
Psp6I	CCWGG	2 cut(s)	181, 402
PspFI	CCCAGC	1 cut(s)	110
PspGI	CCWGG	2 cut(s)	181, 402
PspN4I	GGNNCC	3 cut(s)	180, 187, 427
PspPI	GGNCC	1 cut(s)	395
PstNI	CAGNNNCTG	1 cut(s)	443
PvuII	CAGCTG	1 cut(s)	443
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	1 cut(s)	366
SalI	GTCGAC	1 cut(s)	65
SaqAI	TTAA	3 cut(s)	75, 104, 230
SatI	GCNGC	2 cut(s)	438, 441
Sau3AI	GATC	2 cut(s)	25, 274
Sau96I	GGNCC	1 cut(s)	395
SchI	GAGTC	1 cut(s)	338
ScrFI	CCNGG	2 cut(s)	183, 404
SetI	ASST	6 cut(s)	126, 220, 260, 421, 445, 493
SfaNI	GCATC	2 cut(s)	54, 386
SinI	GGWCC	1 cut(s)	395
SmiMI	CAYNNNNRTG	1 cut(s)	366
SmlI	CTYRAG	2 cut(s)	103, 190
SmoI	CTYRAG	2 cut(s)	103, 190
Sse9I	AATT	3 cut(s)	115, 390, 480
SsiI	CCGC	1 cut(s)	148
StyD4I	CCNGG	2 cut(s)	181, 402
TaqI	TCGA	2 cut(s)	66, 451
TasI	AATT	3 cut(s)	115, 390, 480
TfiI	GAWTC	1 cut(s)	385
Tru1I	TTAA	3 cut(s)	75, 104, 230
Tru9I	TTAA	3 cut(s)	75, 104, 230
TscAI	CASTG	2 cut(s)	16, 330
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	2 cut(s)	437, 440
Tsp45I	GTSAC	1 cut(s)	158
TspRI	CASTG	2 cut(s)	16, 330
Vha464I	CTTAAG	1 cut(s)	103
VpaK11BI	GGWCC	1 cut(s)	395
XapI	RAATTY	1 cut(s)	480
XceI	RCATGY	2 cut(s)	166, 365
XmiI	GTMKAC	1 cut(s)	66

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.