Zinc finger protein
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_laevigata | RLG00000023029 |
| rosa_multiflora | Rmu_sc0002927.1_g000029 Rmu_sc0007339.1_g000003 Rmu_sc0009890.1_g000001 Rmu_sc0027862.1_g000001 Rmu_ssc0000155.1_g000001 |
| rosa_roxburghii | Rroxscaffold_1G00058330 |
| rosa_rugosa | Rorug05G0246100 |
| rosa_samantha | Rh1AG088400 Rh3DG266000 Rh5CG151200 Rh5CG155200 Rh7CG392900 Rh7DG427800 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 80 |
| AciI | CCGC | 1 cut(s) | 108 |
| AclWI | GGATC | 1 cut(s) | 302 |
| AcsI | RAATTY | 1 cut(s) | 513 |
| AcuI | CTGAAG | 2 cut(s) | 171, 540 |
| AdeI | CACNNNGTG | 1 cut(s) | 320 |
| AfaI | GTAC | 1 cut(s) | 450 |
| AjnI | CCWGG | 1 cut(s) | 435 |
| AluBI | AGCT | 3 cut(s) | 164, 476, 524 |
| AluI | AGCT | 3 cut(s) | 164, 476, 524 |
| Alw21I | GWGCWC | 1 cut(s) | 444 |
| AlwI | GGATC | 1 cut(s) | 302 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 476 |
| ApeKI | GCWGC | 2 cut(s) | 470, 473 |
| ApoI | RAATTY | 1 cut(s) | 513 |
| AspA2I | CCTAGG | 1 cut(s) | 361 |
| AspLEI | GCGC | 1 cut(s) | 128 |
| AvrII | CCTAGG | 1 cut(s) | 361 |
| Bbv12I | GWGCWC | 1 cut(s) | 444 |
| BbvCI | CCTCAGC | 1 cut(s) | 507 |
| BbvI | GCAGC | 2 cut(s) | 482, 485 |
| BccI | CCATC | 3 cut(s) | 17, 307, 319 |
| BciT130I | CCWGG | 1 cut(s) | 437 |
| BclI | TGATCA | 1 cut(s) | 334 |
| BfaI | CTAG | 2 cut(s) | 143, 362 |
| BisI | GCNGC | 2 cut(s) | 471, 474 |
| BlnI | CCTAGG | 1 cut(s) | 361 |
| BlsI | GCNGC | 2 cut(s) | 472, 475 |
| Bme1390I | CCNGG | 1 cut(s) | 437 |
| BmiI | GGNNCC | 2 cut(s) | 140, 460 |
| BmrFI | CCNGG | 1 cut(s) | 437 |
| BmsI | GCATC | 2 cut(s) | 231, 419 |
| BpmI | CTGGAG | 2 cut(s) | 157, 327 |
| Bpu10I | CCTNAGC | 1 cut(s) | 507 |
| BsaJI | CCNNGG | 1 cut(s) | 361 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 188, 218 |
| Bse1I | ACTGG | 1 cut(s) | 140 |
| Bse3DI | GCAATG | 1 cut(s) | 489 |
| BseBI | CCWGG | 1 cut(s) | 437 |
| BseDI | CCNNGG | 1 cut(s) | 361 |
| BseGI | GGATG | 1 cut(s) | 299 |
| BseMI | GCAATG | 1 cut(s) | 489 |
| BseMII | CTCAG | 3 cut(s) | 143, 498, 509 |
| BseNI | ACTGG | 1 cut(s) | 140 |
| BseXI | GCAGC | 2 cut(s) | 482, 485 |
| BsgI | GTGCAG | 2 cut(s) | 489, 525 |
| BsiHKAI | GWGCWC | 1 cut(s) | 444 |
| BslFI | GGGAC | 1 cut(s) | 23 |
| BsmFI | GGGAC | 1 cut(s) | 23 |
| Bsp1286I | GDGCHC | 1 cut(s) | 444 |
| Bsp143I | GATC | 2 cut(s) | 307, 334 |
| BspACI | CCGC | 1 cut(s) | 108 |
| BspCNI | CTCAG | 3 cut(s) | 142, 499, 508 |
| BspHI | TCATGA | 1 cut(s) | 400 |
| BspLI | GGNNCC | 2 cut(s) | 140, 460 |
| BspPI | GGATC | 1 cut(s) | 302 |
| BsrDI | GCAATG | 1 cut(s) | 489 |
| BsrI | ACTGG | 1 cut(s) | 140 |
| BssECI | CCNNGG | 1 cut(s) | 361 |
| BssMI | GATC | 2 cut(s) | 307, 334 |
| BssT1I | CCWWGG | 1 cut(s) | 361 |
| Bst2UI | CCWGG | 1 cut(s) | 437 |
| Bst6I | CTCTTC | 2 cut(s) | 147, 194 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 293 |
| BstDEI | CTNAG | 4 cut(s) | 129, 317, 495, 507 |
| BstF5I | GGATG | 1 cut(s) | 299 |
| BstHHI | GCGC | 1 cut(s) | 128 |
| BstKTI | GATC | 2 cut(s) | 310, 337 |
| BstMBI | GATC | 2 cut(s) | 307, 334 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 293 |
| BstNI | CCWGG | 1 cut(s) | 437 |
| BstNSI | RCATGY | 2 cut(s) | 126, 398 |
| BstSCI | CCNGG | 1 cut(s) | 435 |
| BstV1I | GCAGC | 2 cut(s) | 482, 485 |
| BtsCI | GGATG | 1 cut(s) | 299 |
| CaiI | CAGNNNCTG | 1 cut(s) | 476 |
| CciI | TCATGA | 1 cut(s) | 400 |
| CfoI | GCGC | 1 cut(s) | 128 |
| Csp6I | GTAC | 1 cut(s) | 449 |
| CviAII | CATG | 5 cut(s) | 33, 123, 395, 401, 455 |
| CviJI | RGCY | 6 cut(s) | 141, 148, 164, 476, 488, 524 |
| CviKI_1 | RGCY | 6 cut(s) | 141, 148, 164, 476, 488, 524 |
| CviQI | GTAC | 1 cut(s) | 449 |
| DdeI | CTNAG | 4 cut(s) | 129, 317, 495, 507 |
| DpnI | GATC | 2 cut(s) | 309, 336 |
| DpnII | GATC | 2 cut(s) | 307, 334 |
| DraI | TTTAAA | 1 cut(s) | 277 |
| DraIII | CACNNNGTG | 1 cut(s) | 320 |
| Eam1104I | CTCTTC | 2 cut(s) | 147, 194 |
| EarI | CTCTTC | 2 cut(s) | 147, 194 |
| Eco130I | CCWWGG | 1 cut(s) | 361 |
| Eco57I | CTGAAG | 2 cut(s) | 171, 540 |
| EcoRII | CCWGG | 1 cut(s) | 435 |
| EcoT14I | CCWWGG | 1 cut(s) | 361 |
| ErhI | CCWWGG | 1 cut(s) | 361 |
| FaeI | CATG | 5 cut(s) | 36, 126, 398, 404, 458 |
| FaqI | GGGAC | 1 cut(s) | 23 |
| FatI | CATG | 5 cut(s) | 32, 122, 394, 400, 454 |
| FbaI | TGATCA | 1 cut(s) | 334 |
| Fnu4HI | GCNGC | 2 cut(s) | 471, 474 |
| FokI | GGATG | 1 cut(s) | 286 |
| Fsp4HI | GCNGC | 2 cut(s) | 471, 474 |
| FspBI | CTAG | 2 cut(s) | 143, 362 |
| GlaI | GCGC | 1 cut(s) | 127 |
| GluI | GCNGC | 2 cut(s) | 471, 474 |
| GsuI | CTGGAG | 2 cut(s) | 157, 327 |
| HhaI | GCGC | 1 cut(s) | 128 |
| Hin1II | CATG | 5 cut(s) | 36, 126, 398, 404, 458 |
| Hin6I | GCGC | 1 cut(s) | 126 |
| HinP1I | GCGC | 1 cut(s) | 126 |
| HincII | GTYRAC | 2 cut(s) | 244, 376 |
| HindII | GTYRAC | 2 cut(s) | 244, 376 |
| HindIII | AAGCTT | 1 cut(s) | 522 |
| HinfI | GANTC | 3 cut(s) | 49, 245, 377 |
| Hpy166II | GTNNAC | 2 cut(s) | 244, 376 |
| Hpy188I | TCNGA | 3 cut(s) | 132, 498, 520 |
| Hpy188III | TCNNGA | 3 cut(s) | 344, 401, 431 |
| Hpy8I | GTNNAC | 2 cut(s) | 244, 376 |
| HpyAV | CCTTC | 1 cut(s) | 187 |
| HpyCH4V | TGCA | 2 cut(s) | 470, 542 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 293 |
| HpyF3I | CTNAG | 4 cut(s) | 129, 317, 495, 507 |
| Hsp92II | CATG | 5 cut(s) | 36, 126, 398, 404, 458 |
| HspAI | GCGC | 1 cut(s) | 126 |
| Ksp22I | TGATCA | 1 cut(s) | 334 |
| Kzo9I | GATC | 2 cut(s) | 307, 334 |
| LmnI | GCTCC | 3 cut(s) | 138, 301, 439 |
| Lsp1109I | GCAGC | 2 cut(s) | 482, 485 |
| LweI | GCATC | 2 cut(s) | 231, 419 |
| MaeI | CTAG | 2 cut(s) | 143, 362 |
| MaeIII | GTNAC | 1 cut(s) | 118 |
| MalI | GATC | 2 cut(s) | 309, 336 |
| MboI | GATC | 2 cut(s) | 307, 334 |
| MboII | GAAGA | 3 cut(s) | 96, 164, 211 |
| MfeI | CAATTG | 1 cut(s) | 423 |
| MhlI | GDGCHC | 1 cut(s) | 444 |
| MluCI | AATT | 3 cut(s) | 75, 423, 513 |
| MlyI | GAGTC | 2 cut(s) | 239, 371 |
| MnlI | CCTC | 3 cut(s) | 195, 462, 502 |
| MseI | TTAA | 2 cut(s) | 216, 276 |
| MslI | CAYNNNNRTG | 1 cut(s) | 399 |
| MspA1I | CMGCKG | 1 cut(s) | 476 |
| MspR9I | CCNGG | 1 cut(s) | 437 |
| MunI | CAATTG | 1 cut(s) | 423 |
| MvaI | CCWGG | 1 cut(s) | 437 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 293 |
| NdeII | GATC | 2 cut(s) | 307, 334 |
| NlaIII | CATG | 5 cut(s) | 36, 126, 398, 404, 458 |
| NlaIV | GGNNCC | 2 cut(s) | 140, 460 |
| NmeAIII | GCCGAG | 1 cut(s) | 263 |
| NmuCI | GTSAC | 1 cut(s) | 118 |
| NspI | RCATGY | 2 cut(s) | 126, 398 |
| PagI | TCATGA | 1 cut(s) | 400 |
| PfeI | GAWTC | 1 cut(s) | 49 |
| PkrI | GCNGC | 2 cut(s) | 472, 475 |
| PleI | GAGTC | 2 cut(s) | 239, 371 |
| PpsI | GAGTC | 2 cut(s) | 239, 371 |
| PsiI | TTATAA | 1 cut(s) | 80 |
| Psp6I | CCWGG | 1 cut(s) | 435 |
| PspGI | CCWGG | 1 cut(s) | 435 |
| PspN4I | GGNNCC | 2 cut(s) | 140, 460 |
| PstNI | CAGNNNCTG | 1 cut(s) | 476 |
| PvuII | CAGCTG | 1 cut(s) | 476 |
| RsaI | GTAC | 1 cut(s) | 450 |
| RsaNI | GTAC | 1 cut(s) | 449 |
| RseI | CAYNNNNRTG | 1 cut(s) | 399 |
| SaqAI | TTAA | 2 cut(s) | 216, 276 |
| SatI | GCNGC | 2 cut(s) | 471, 474 |
| Sau3AI | GATC | 2 cut(s) | 307, 334 |
| SchI | GAGTC | 2 cut(s) | 239, 371 |
| ScrFI | CCNGG | 1 cut(s) | 437 |
| SduI | GDGCHC | 1 cut(s) | 444 |
| SetI | ASST | 6 cut(s) | 86, 166, 206, 454, 478, 526 |
| SfaNI | GCATC | 2 cut(s) | 231, 419 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 399 |
| Sse9I | AATT | 3 cut(s) | 75, 423, 513 |
| SsiI | CCGC | 1 cut(s) | 108 |
| SspMI | CTAG | 2 cut(s) | 143, 362 |
| StyD4I | CCNGG | 1 cut(s) | 435 |
| StyI | CCWWGG | 1 cut(s) | 361 |
| TaqI | TCGA | 2 cut(s) | 5, 484 |
| TasI | AATT | 3 cut(s) | 75, 423, 513 |
| TfiI | GAWTC | 1 cut(s) | 49 |
| Tru1I | TTAA | 2 cut(s) | 216, 276 |
| Tru9I | TTAA | 2 cut(s) | 216, 276 |
| TseFI | GTSAC | 1 cut(s) | 118 |
| TseI | GCWGC | 2 cut(s) | 470, 473 |
| Tsp45I | GTSAC | 1 cut(s) | 118 |
| TspDTI | ATGAA | 2 cut(s) | 30, 521 |
| XapI | RAATTY | 1 cut(s) | 513 |
| XceI | RCATGY | 2 cut(s) | 126, 398 |
| XmaJI | CCTAGG | 1 cut(s) | 361 |
| XspI | CTAG | 2 cut(s) | 143, 362 |