Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002962.1

Orthogroup ID

OG0011056

Physical Location & Seq

Genomic Coordinates Forward (+)

87458 .. 93896

Gene Structure 6439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 3213 bp

atgccgagtctgaaacggtgcaaattcggtgattcggaggaggacgagagctcggggaggaagaagaggaggactaatgggtactacccgctcaatttgctcggcgaggtggcggcggggattattccggtgagcttcaggggcttgcttgggtcggttgctgcggcggagaagggaggagggttttcgtggtgcactgaagtgtcgtgctcgccacctccggaggaggaggcggagtcgaaatcgaaggtatgcaaatccgcaaaagggaaggctgaggtttcgcggccgccgctggtgaggacgtcgaggggacgtgttcaggtactgccttctcggtttaatgactcggttattgagaattggaagaaagagagtaagactagtttgcgtggtgatagtaatgttgaagatgagaagcctagcttgaaaccccagaaaaatggaaagaagctagggaataatgtgtatggctcgaagaagtattcgggtttgtgtgaggaagaagaggaggaggaggaagaagaggaggaagatgaagatgggtatgtgccgtttaagagttataacatgaggaagtacaactccagctcacgtagcacactcacttcagtgcatgagcatttggttgaagatgacaagtgtgcggttgtggagattattgaagaagaagaagaagaagatgatttagagggtgcagtgaggatttcaaatcagaggacagatgggttgtatggaccggaggacttttattccggtgatatagtgtgggcaaagccagggaaaaaggagcccttttggcctgccattgttattgatccaatgacacaagcgccggagctggttttgagggcttgcgtacctgatgcagcttgtgtcatgtttttcggttactctgggaatgagaaccaaagggattatgcctgggttaaaaggggatcactttttccatttatggattatatagacaggtttcgagagcagtctgaactgggcaactgcaagccctgtgatttccagatggcaactgaggaggcatttttggtggatcaagggtttactgagaagttgatagctgatataaacatggcagctgggaacccagtgtatgatgaatccgtacttagaggagttcaagaggctactggttcaaatcatgatctcgactatcagtttgtggaccaggacatctatcggaagaagaaagatgcaagagtctgtgaaggctgtggctcggatcttagaatgccaaagaaaatgaaggtttcaacttctggagggcaattcctttgtaaatcatgtgctaagttaacaaaacatgtttgtggcatatgcaagaagtggaatcagcctgacagtggaagttgggtccggtgtgatggttgcagagtatgggtgcatgcagaatgtgatagaattaacaccaattattataagaatttggggggcactgattatttctgccctccttgcaaagtaaagtttaactttgaattgtcagattctgaaaaggagcaaccaaaagtcaagtgtagatctactaaaaatgaggcacaactggtgctgcctaacaaggttactgttctctgtaacggtgtggaaggcatatattttccaagtcttcactctgttgtgtgcaagtgtgggtactgtgggacagaaaagcaagcgcttagtgaatgggagcgacacacaggttccaagtccagaaattggaggactagtgtcagagttaaaggctccttactggcactggaacaatggatgctgcagttagcagagtttcatgaaaatgctcttgtgtctgttaaaccacctaaacgaccttctattaaagaacggaagcaaaaattgctcacttttttgcaagaaaagtatgaacccgtttatgcgaagtggacaacagagcgatgtgctgtatgtagatgggttgaagactgggactacaacaaaatcatcatatgcaacagatgtcaaatagctgttcatcaagaatgctatggagcaagacatgtccgggatttcacttcatgggtttgcaaagcatgtgaaacacctgaagtcaagagagaatgttgcctctgtcctgttaaaggaggtgctttaaagccaactgatattgagacattgtgggttcatattacatgcgcttggttcagacctgaagtgtcgtttgcaagtgatgagaagatggagcctgctcttggtatcttgagtattccatcaaattcttttgtcaagatttgtgtaatctgtaagcaaattcatggttcatgcacacaatgtagcaggtgctccacttattaccatgcaatgtgtgcatccagggcagggtaccgcatggagttgcactctttagagaaaaatgggaaacagattacaaaaatggtttcctattgcgcttatcacagggctccaaatccagatacggtcttaattatacagactcctctaggagtgttttcagccaaaagccttctccaaagtaagaagaggcctggttcaaggctaatttcatctaatagaattaagttggaagaggttccaactgttgaaacgactgaacctgagccattatcttctgcaaggtgccgaatatttaaaagattgaaagatagtaggaagagaacagaagaagaagctgttgcccaccaagtgatgggacattcccatcatcccttggaagcaattcgaagtttgaacaaattcagagtagtagaggaacctctaactttttcatcttttagagaacggctttaccatttacagagaaccgaaaaagatcgtgtttgctttggtagatccgggatacatggatggggtctctttgcacgtagaaacattcaagaaggagaaatggtccttgaataccgtggtgaacaggtgaggcgtagtattgcagatttgagggaggcacgatatagatcagaaggcaaagactgttacctttttaagattagcgaagaagtggtagtagatgccaccgataaaggaaatatagcacggctgatcaatcattcgtgcatgcccaattgttatgcgaggatcatgagtgttggtgatgaggaaagccggattgtacttattgcaaagactaatgtatctgcgggtgacgagctaacgtatgattacttgtttgatccaaatgagcctgatgaattcaaagttccttgtctatgtaaagctcccaactgccggaaattcatgaattag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005911 GO:0008150 GO:0009292 GO:0009294 GO:0009506 GO:0009893 GO:0009987 GO:0010604 GO:0010638 GO:0019222 GO:0030054 GO:0031056 GO:0031058 GO:0031060 GO:0031062 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032268 GO:0032270 GO:0033043 GO:0033044 GO:0044764 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0051128 GO:0051130 GO:0051171 GO:0051173 GO:0051246 GO:0051247 GO:0051569 GO:0051571 GO:0051704 GO:0055044 GO:0060255 GO:0065007 GO:0080090 GO:1902275 GO:1905269 GO:2001252

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD PHD_2 PWWP SET zf-HC5HC2H_2

Protein Analysis

1070

Amino Acids

121.61

Weight (kDa)

7.76

Isoelectric Point (pI)

51.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PWWP	PF00855	253 - 346	1.5e-13	PWWP domain
PHD	PF00628	442 - 491	2.4e-07	PHD-finger
PHD_2	PF13831	650 - 684	3.1e-11	PHD-finger
zf-HC5HC2H_2	PF13832	691 - 803	9.9e-28	PHD-zinc-finger like domain
zf-HC5HC2H	PF13771	713 - 804	3.1e-13	PHD-like zinc-binding domain
SET	PF00856	939 - 1044	7.5e-25	SET domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0011056)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G27910 AT5G53430
fragaria_vesca	FvH4_7g31710 FvH4_7g31710
malus_domestica	MD01G1220300.v1.1 MD07G1289800.v1.1
prunus_persica	Prupe.2G311000_v2.0.a1
pyrus_communis	pycom01g22990 pycom07g26250
rosa_chinensis	RchiOBHm_Chr1g0380901
rosa_laevigata	RLG00000026264
rosa_multiflora	Rmu_sc0002962.1_g000020
rosa_roxburghii	Rroxscaffold_4G00278980
rosa_rugosa	Rorug01G0425200 Rorug01G0425300
rosa_samantha	Rh1AG449100 Rh1BG404800 Rh1CG418800 Rh1DG435200
rosa_wichuraiana	Rw1G039150

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	567, 1434
AarI	CACCTGC	1 cut(s)	2280
AatII	GACGTC	1 cut(s)	308
Acc36I	ACCTGC	1 cut(s)	2280
Acc65I	GGTACC	1 cut(s)	2334
AccB1I	GGYRCC	2 cut(s)	2334, 2589
AccB7I	CCANNNNNTGG	2 cut(s)	1713, 2659
AccBSI	CCGCTC	1 cut(s)	91
AccII	CGCG	1 cut(s)	286
AccIII	TCCGGA	1 cut(s)	220
AclWI	GGATC	7 cut(s)	812, 946, 1056, 1245, 2796, 3053, 3134
AcoI	YGGCCR	1 cut(s)	287
AcsI	RAATTY	7 cut(s)	23, 1438, 2227, 2262, 2705, 3158, 3200
AcuI	CTGAAG	5 cut(s)	121, 219, 594, 2079, 2184
AcyI	GRCGYC	1 cut(s)	305
AdeI	CACNNNGTG	1 cut(s)	2656
AfaI	GTAC	8 cut(s)	83, 327, 581, 861, 1122, 1649, 2336, 3081
AfeI	AGCGCT	1 cut(s)	1671
AfiI	CCNNNNNNNGG	8 cut(s)	267, 1358, 1713, 2093, 2204, 2331, 2659, 3195
AflIII	ACRYGT	3 cut(s)	316, 1318, 2011
AhlI	ACTAGT	2 cut(s)	383, 1721
AjiI	CACGTC	1 cut(s)	317
AjnI	CCWGG	5 cut(s)	778, 923, 1182, 2324, 2497
AleI	CACNNNNGTG	2 cut(s)	200, 611
Alw21I	GWGCWC	4 cut(s)	53, 197, 212, 2297
Alw26I	GTCTC	2 cut(s)	2117, 2828
Alw44I	GTGCAC	1 cut(s)	193
AlwI	GGATC	7 cut(s)	812, 946, 1056, 1245, 2796, 3053, 3134
AlwNI	CAGNNNCTG	2 cut(s)	328, 1505
Ama87I	CYCGRG	1 cut(s)	52
Aor13HI	TCCGGA	1 cut(s)	220
Aor51HI	AGCGCT	1 cut(s)	1671
AoxI	GGCC	3 cut(s)	287, 800, 2495
ApaLI	GTGCAC	1 cut(s)	193
ApeKI	GCWGC	5 cut(s)	161, 869, 1091, 1564, 1768
ApoI	RAATTY	7 cut(s)	23, 1438, 2227, 2262, 2705, 3158, 3200
ArsI	GACNNNNNNTTYG	2 cut(s)	1157, 1189
Asp700I	GAANNNNTTC	3 cut(s)	2541, 2688, 2705
Asp718I	GGTACC	1 cut(s)	2334
AspLEI	GCGC	4 cut(s)	835, 1672, 2150, 2402
AspS9I	GGNCC	4 cut(s)	737, 1180, 1369, 2860
AsuC2I	CCSGG	2 cut(s)	2018, 2806
AsuHPI	GGTGA	9 cut(s)	41, 142, 310, 407, 770, 2888, 2896, 3071, 3122
AsuII	TTCGAA	1 cut(s)	2692
AvaI	CYCGRG	1 cut(s)	52
AvaII	GGWCC	4 cut(s)	737, 1180, 1369, 2860
BaeGI	GKGCMC	2 cut(s)	197, 1451
BaeI	ACNNNNGTAYC	2 cut(s)	3084, 3117
BanI	GGYRCC	2 cut(s)	2334, 2589
BanII	GRGCYC	3 cut(s)	53, 795, 2416
BbsI	GAAGAC	2 cut(s)	1613, 1941
Bbv12I	GWGCWC	4 cut(s)	53, 197, 212, 2297
BbvCI	CCTCAGC	1 cut(s)	276
BbvI	GCAGC	5 cut(s)	148, 881, 1103, 1551, 1755
BceAI	ACGGC	3 cut(s)	538, 2768, 3020
BciT130I	CCWGG	5 cut(s)	780, 925, 1184, 2326, 2499
BciVI	GTATCC	1 cut(s)	2802
BclI	TGATCA	1 cut(s)	3009
BcnI	CCSGG	2 cut(s)	2018, 2806
BcoDI	GTCTC	2 cut(s)	2117, 2828
BcuI	ACTAGT	2 cut(s)	383, 1721
BfaI	CTAG	5 cut(s)	384, 423, 455, 1722, 2453
BfmI	CTRYAG	1 cut(s)	1769
BfoI	RGCGCY	2 cut(s)	836, 1673
BfuAI	ACCTGC	1 cut(s)	2280
BfuI	GTATCC	1 cut(s)	2802
BglI	GCCNNNNNGGC	1 cut(s)	799
BglII	AGATCT	1 cut(s)	1535
Bme1390I	CCNGG	7 cut(s)	780, 925, 1184, 2018, 2326, 2499, 2806
Bme18I	GGWCC	4 cut(s)	737, 1180, 1369, 2860
BmeT110I	CYCGRG	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	317
BmgT120I	GGNCC	4 cut(s)	737, 1180, 1369, 2860
BmrFI	CCNGG	7 cut(s)	780, 925, 1184, 2018, 2326, 2499, 2806
BmrI	ACTGGG	3 cut(s)	1001, 1097, 1948
BmsI	GCATC	5 cut(s)	856, 1198, 1755, 2330, 2968
BmuI	ACTGGG	3 cut(s)	1001, 1097, 1948
BoxI	GACNNNNGTC	1 cut(s)	1724
BpiI	GAAGAC	2 cut(s)	1613, 1941
BplI	GAGNNNNNCTC	2 cut(s)	2336, 2368
BpmI	CTGGAG	2 cut(s)	571, 1296
Bpu10I	CCTNAGC	2 cut(s)	276, 2568
Bpu14I	TTCGAA	1 cut(s)	2692
BpuEI	CTTGAG	1 cut(s)	2233
BpuMI	CCSGG	2 cut(s)	2018, 2806
BsaAI	YACGTR	2 cut(s)	596, 2834
BsaBI	GATNNNNATC	1 cut(s)	2923
BsaHI	GRCGYC	1 cut(s)	305
BsaI	GGTCTC	1 cut(s)	2828
BsaJI	CCNNGG	5 cut(s)	779, 924, 2325, 2679, 2872
BsaWI	WCCGGW	5 cut(s)	127, 220, 739, 755, 1371
BsaXI	ACNNNNNCTCC	6 cut(s)	221, 251, 1708, 1738, 2844, 2874
Bsc4I	CCNNNNNNNGG	8 cut(s)	267, 1358, 1713, 2093, 2204, 2331, 2659, 3195
Bse1I	ACTGG	7 cut(s)	996, 1103, 1150, 1563, 1752, 1758, 1943
Bse3DI	GCAATG	1 cut(s)	2319
Bse8I	GATNNNNATC	1 cut(s)	2923
BseAI	TCCGGA	1 cut(s)	220
BseBI	CCWGG	5 cut(s)	780, 925, 1184, 2326, 2499
BseDI	CCNNGG	5 cut(s)	779, 924, 2325, 2679, 2872
BseGI	GGATG	4 cut(s)	1770, 2321, 2674, 2822
BseJI	GATNNNNATC	1 cut(s)	2923
BseLI	CCNNNNNNNGG	8 cut(s)	267, 1358, 1713, 2093, 2204, 2331, 2659, 3195
BseMI	GCAATG	1 cut(s)	2319
BseMII	CTCAG	4 cut(s)	267, 1020, 1053, 2559
BseNI	ACTGG	7 cut(s)	996, 1103, 1150, 1563, 1752, 1758, 1943
BseSI	GKGCMC	2 cut(s)	197, 1451
BseX3I	CGGCCG	1 cut(s)	287
BseXI	GCAGC	5 cut(s)	148, 881, 1103, 1551, 1755
BseYI	CCCAGC	1 cut(s)	1094
BsgI	GTGCAG	1 cut(s)	717
Bsh1236I	CGCG	1 cut(s)	286
Bsh1285I	CGRYCG	1 cut(s)	290
BshFI	GGCC	3 cut(s)	289, 802, 2497
BshNI	GGYRCC	2 cut(s)	2334, 2589
BsiEI	CGRYCG	1 cut(s)	290
BsiHKAI	GWGCWC	4 cut(s)	53, 197, 212, 2297
BsiHKCI	CYCGRG	1 cut(s)	52
BslFI	GGGAC	4 cut(s)	327, 1669, 1955, 2676
BslI	CCNNNNNNNGG	8 cut(s)	267, 1358, 1713, 2093, 2204, 2331, 2659, 3195
BsmAI	GTCTC	2 cut(s)	2117, 2828
BsmFI	GGGAC	4 cut(s)	327, 1669, 1955, 2676
BsmI	GAATGC	2 cut(s)	1251, 2000
BsnI	GGCC	3 cut(s)	289, 802, 2497
Bso31I	GGTCTC	1 cut(s)	2828
BsoBI	CYCGRG	1 cut(s)	52
Bsp119I	TTCGAA	1 cut(s)	2692
Bsp1286I	GDGCHC	7 cut(s)	53, 197, 212, 795, 1451, 2297, 2416
Bsp13I	TCCGGA	1 cut(s)	220
BspANI	GGCC	3 cut(s)	289, 802, 2497
BspCNI	CTCAG	4 cut(s)	268, 1021, 1054, 2560
BspEI	TCCGGA	1 cut(s)	220
BspFNI	CGCG	1 cut(s)	286
BspHI	TCATGA	4 cut(s)	1156, 1786, 3048, 3204
BspMAI	CTGCAG	1 cut(s)	1773
BspMI	ACCTGC	1 cut(s)	2280
BspPI	GGATC	7 cut(s)	812, 946, 1056, 1245, 2796, 3053, 3134
BspT104I	TTCGAA	1 cut(s)	2692
BspT107I	GGYRCC	2 cut(s)	2334, 2589
BspTNI	GGTCTC	1 cut(s)	2828
BsrBI	CCGCTC	1 cut(s)	91
BsrDI	GCAATG	1 cut(s)	2319
BsrI	ACTGG	7 cut(s)	996, 1103, 1150, 1563, 1752, 1758, 1943
BssECI	CCNNGG	5 cut(s)	779, 924, 2325, 2679, 2872
BssNI	GRCGYC	1 cut(s)	305
BssT1I	CCWWGG	1 cut(s)	2679
Bst2UI	CCWGG	5 cut(s)	780, 925, 1184, 2326, 2499
Bst4CI	ACNGT	9 cut(s)	18, 1358, 1582, 1595, 1652, 2431, 2551, 2873, 2942
Bst6I	CTCTTC	6 cut(s)	59, 501, 519, 2486, 2532, 2618
BstACI	GRCGYC	1 cut(s)	305
BstAPI	GCANNNNNTGC	2 cut(s)	1852, 2318
BstBAI	YACGTR	2 cut(s)	596, 2834
BstBI	TTCGAA	1 cut(s)	2692
BstC8I	GCNNGC	9 cut(s)	146, 212, 804, 856, 1004, 1401, 1668, 2199, 3026
BstDEI	CTNAG	8 cut(s)	276, 1029, 1062, 1124, 1241, 1305, 1673, 2568
BstDSI	CCRYGG	1 cut(s)	2872
BstENI	CCTNNNNNAGG	1 cut(s)	2091
BstF5I	GGATG	4 cut(s)	1770, 2321, 2674, 2822
BstFNI	CGCG	1 cut(s)	286
BstH2I	RGCGCY	2 cut(s)	836, 1673
BstHHI	GCGC	4 cut(s)	835, 1672, 2150, 2402
BstMAI	GTCTC	2 cut(s)	2117, 2828
BstMCI	CGRYCG	1 cut(s)	290
BstMWI	GCNNNNNNNGC	9 cut(s)	97, 141, 292, 597, 799, 1470, 1852, 2318, 2327
BstNI	CCWGG	5 cut(s)	780, 925, 1184, 2326, 2499
BstNSI	RCATGY	6 cut(s)	1322, 1403, 2015, 2049, 2148, 3028
BstPAI	GACNNNNGTC	1 cut(s)	1724
BstSCI	CCNGG	7 cut(s)	778, 923, 1182, 2016, 2324, 2497, 2804
BstSFI	CTRYAG	1 cut(s)	1769
BstSLI	GKGCMC	2 cut(s)	197, 1451
BstUI	CGCG	1 cut(s)	286
BstV1I	GCAGC	5 cut(s)	148, 881, 1103, 1551, 1755
BstV2I	GAAGAC	2 cut(s)	1613, 1941
BstX2I	RGATCY	3 cut(s)	1237, 1535, 2801
BstXI	CCANNNNNNTGG	1 cut(s)	443
BstYI	RGATCY	3 cut(s)	1237, 1535, 2801
BstZI	CGGCCG	1 cut(s)	287
BsuI	GTATCC	1 cut(s)	2802
BsuRI	GGCC	3 cut(s)	289, 802, 2497
BtgI	CCRYGG	1 cut(s)	2872
BtgZI	GCGATG	1 cut(s)	1924
BtrI	CACGTC	1 cut(s)	317
BtsCI	GGATG	4 cut(s)	1770, 2321, 2674, 2822
BtsI	GCAGTG	1 cut(s)	705
BtsIMutI	CAGTG	7 cut(s)	195, 618, 705, 1110, 1363, 1449, 1751
BveI	ACCTGC	1 cut(s)	2280
Cac8I	GCNNGC	9 cut(s)	146, 212, 804, 856, 1004, 1401, 1668, 2199, 3026
CaiI	CAGNNNCTG	2 cut(s)	328, 1505
CciI	TCATGA	4 cut(s)	1156, 1786, 3048, 3204
CciNI	GCGGCCGC	1 cut(s)	287
CfoI	GCGC	4 cut(s)	835, 1672, 2150, 2402
Cfr13I	GGNCC	4 cut(s)	737, 1180, 1369, 2860
Csp6I	GTAC	8 cut(s)	82, 326, 580, 860, 1121, 1648, 2335, 3080
CviQI	GTAC	8 cut(s)	82, 326, 580, 860, 1121, 1648, 2335, 3080
DdeI	CTNAG	8 cut(s)	276, 1029, 1062, 1124, 1241, 1305, 1673, 2568
DraI	TTTAAA	2 cut(s)	2106, 2602
DraIII	CACNNNGTG	1 cut(s)	2656
EaeI	YGGCCR	1 cut(s)	287
EagI	CGGCCG	1 cut(s)	287
Eam1104I	CTCTTC	6 cut(s)	59, 501, 519, 2486, 2532, 2618
EarI	CTCTTC	6 cut(s)	59, 501, 519, 2486, 2532, 2618
EciI	GGCGGA	2 cut(s)	182, 248
Ecl136II	GAGCTC	1 cut(s)	51
EclXI	CGGCCG	1 cut(s)	287
Eco130I	CCWWGG	1 cut(s)	2679
Eco147I	AGGCCT	1 cut(s)	2497
Eco24I	GRGCYC	3 cut(s)	53, 795, 2416
Eco31I	GGTCTC	1 cut(s)	2828
Eco47I	GGWCC	4 cut(s)	737, 1180, 1369, 2860
Eco47III	AGCGCT	1 cut(s)	1671
Eco52I	CGGCCG	1 cut(s)	287
Eco53kI	GAGCTC	1 cut(s)	51
Eco57I	CTGAAG	5 cut(s)	121, 219, 594, 2079, 2184
Eco88I	CYCGRG	1 cut(s)	52
EcoICRI	GAGCTC	1 cut(s)	51
EcoNI	CCTNNNNNAGG	1 cut(s)	2091
EcoRI	GAATTC	1 cut(s)	3158
EcoRII	CCWGG	5 cut(s)	778, 923, 1182, 2324, 2497
EcoT14I	CCWWGG	1 cut(s)	2679
EcoT38I	GRGCYC	3 cut(s)	53, 795, 2416
ErhI	CCWWGG	1 cut(s)	2679
FalI	AAGNNNNNCTT	6 cut(s)	410, 442, 779, 811, 1472, 1504
FaqI	GGGAC	4 cut(s)	327, 1669, 1955, 2676
FauI	CCCGC	3 cut(s)	96, 109, 3100
FauNDI	CATATG	2 cut(s)	1331, 1961
FbaI	TGATCA	1 cut(s)	3009
FokI	GGATG	4 cut(s)	1777, 2308, 2661, 2829
FriOI	GRGCYC	3 cut(s)	53, 795, 2416
FspBI	CTAG	5 cut(s)	384, 423, 455, 1722, 2453
GlaI	GCGC	4 cut(s)	834, 1671, 2149, 2401
GsaI	CCCAGC	1 cut(s)	1098
GsuI	CTGGAG	2 cut(s)	571, 1296
HaeII	RGCGCY	2 cut(s)	836, 1673
HaeIII	GGCC	3 cut(s)	289, 802, 2497
HhaI	GCGC	4 cut(s)	835, 1672, 2150, 2402
Hin1I	GRCGYC	1 cut(s)	305
Hin6I	GCGC	4 cut(s)	833, 1670, 2148, 2400
HinP1I	GCGC	4 cut(s)	833, 1670, 2148, 2400
HincII	GTYRAC	1 cut(s)	1311
HindII	GTYRAC	1 cut(s)	1311
HinfI	GANTC	9 cut(s)	7, 32, 236, 347, 1115, 1215, 1345, 1502, 2446
HpaI	GTTAAC	1 cut(s)	1311
HphI	GGTGA	9 cut(s)	41, 142, 310, 407, 770, 2888, 2896, 3071, 3122
Hpy166II	GTNNAC	6 cut(s)	195, 1059, 1180, 1311, 1899, 2879
Hpy8I	GTNNAC	6 cut(s)	195, 1059, 1180, 1311, 1899, 2879
Hpy99I	CGWCG	1 cut(s)	310
HpyCH4III	ACNGT	9 cut(s)	18, 1358, 1582, 1595, 1652, 2431, 2551, 2873, 2942
HpyCH4IV	ACGT	5 cut(s)	305, 316, 595, 2833, 3122
HpyF10VI	GCNNNNNNNGC	9 cut(s)	97, 141, 292, 597, 799, 1470, 1852, 2318, 2327
HpyF3I	CTNAG	8 cut(s)	276, 1029, 1062, 1124, 1241, 1305, 1673, 2568
HpySE526I	ACGT	5 cut(s)	305, 316, 595, 2833, 3122
Hsp92I	GRCGYC	1 cut(s)	305
HspAI	GCGC	4 cut(s)	833, 1670, 2148, 2400
Kpn2I	TCCGGA	1 cut(s)	220
KpnI	GGTACC	1 cut(s)	2338
Ksp22I	TGATCA	1 cut(s)	3009
KspAI	GTTAAC	1 cut(s)	1311
Lsp1109I	GCAGC	5 cut(s)	148, 881, 1103, 1551, 1755
LweI	GCATC	5 cut(s)	856, 1198, 1755, 2330, 2968
MaeI	CTAG	5 cut(s)	384, 423, 455, 1722, 2453
MaeII	ACGT	5 cut(s)	305, 316, 595, 2833, 3122
MaeIII	GTNAC	5 cut(s)	890, 1576, 1589, 2942, 3110
MbiI	CCGCTC	1 cut(s)	91
MfeI	CAATTG	1 cut(s)	3031
MflI	RGATCY	3 cut(s)	1237, 1535, 2801
MhlI	GDGCHC	7 cut(s)	53, 197, 212, 795, 1451, 2297, 2416
MlyI	GAGTC	5 cut(s)	16, 245, 341, 1224, 2440
MmeI	TCCRAC	2 cut(s)	2514, 2570
MroI	TCCGGA	1 cut(s)	220
MroXI	GAANNNNTTC	3 cut(s)	2541, 2688, 2705
MslI	CAYNNNNRTG	4 cut(s)	200, 611, 1323, 1791
MspA1I	CMGCKG	2 cut(s)	295, 1094
MspR9I	CCNGG	7 cut(s)	780, 925, 1184, 2018, 2326, 2499, 2806
MunI	CAATTG	1 cut(s)	3031
Mva1269I	GAATGC	2 cut(s)	1251, 2000
MvaI	CCWGG	5 cut(s)	780, 925, 1184, 2326, 2499
MvnI	CGCG	1 cut(s)	286
MwoI	GCNNNNNNNGC	9 cut(s)	97, 141, 292, 597, 799, 1470, 1852, 2318, 2327
NciI	CCSGG	2 cut(s)	2018, 2806
NdeI	CATATG	2 cut(s)	1331, 1961
NmeAIII	GCCGAG	2 cut(s)	30, 81
NmuCI	GTSAC	1 cut(s)	3110
NotI	GCGGCCGC	1 cut(s)	287
NspI	RCATGY	6 cut(s)	1322, 1403, 2015, 2049, 2148, 3028
NspV	TTCGAA	1 cut(s)	2692
OliI	CACNNNNGTG	2 cut(s)	200, 611
PaeI	GCATGC	2 cut(s)	1403, 3028
PagI	TCATGA	4 cut(s)	1156, 1786, 3048, 3204
PaqCI	CACCTGC	1 cut(s)	2280
PceI	AGGCCT	1 cut(s)	2497
PciI	ACATGT	2 cut(s)	1318, 2011
PctI	GAATGC	2 cut(s)	1251, 2000
PdmI	GAANNNNTTC	3 cut(s)	2541, 2688, 2705
PfeI	GAWTC	4 cut(s)	32, 1115, 1345, 1502
PflMI	CCANNNNNTGG	2 cut(s)	1713, 2659
PfoI	TCCNGGA	2 cut(s)	2016, 2804
PleI	GAGTC	5 cut(s)	15, 244, 341, 1223, 2440
PpsI	GAGTC	5 cut(s)	15, 244, 341, 1223, 2440
Ppu21I	YACGTR	2 cut(s)	596, 2834
PscI	ACATGT	2 cut(s)	1318, 2011
PshAI	GACNNNNGTC	1 cut(s)	1724
PsiI	TTATAA	2 cut(s)	567, 1434
Psp124BI	GAGCTC	1 cut(s)	53
Psp6I	CCWGG	5 cut(s)	778, 923, 1182, 2324, 2497
PspFI	CCCAGC	1 cut(s)	1094
PspGI	CCWGG	5 cut(s)	778, 923, 1182, 2324, 2497
PspPI	GGNCC	4 cut(s)	737, 1180, 1369, 2860
PstI	CTGCAG	1 cut(s)	1773
PstNI	CAGNNNCTG	2 cut(s)	328, 1505
PsuI	RGATCY	3 cut(s)	1237, 1535, 2801
PvuII	CAGCTG	1 cut(s)	1094
RsaI	GTAC	8 cut(s)	83, 327, 581, 861, 1122, 1649, 2336, 3081
RsaNI	GTAC	8 cut(s)	82, 326, 580, 860, 1121, 1648, 2335, 3080
RseI	CAYNNNNRTG	4 cut(s)	200, 611, 1323, 1791
SacI	GAGCTC	1 cut(s)	53
Sau96I	GGNCC	4 cut(s)	737, 1180, 1369, 2860
SchI	GAGTC	5 cut(s)	16, 245, 341, 1224, 2440
ScrFI	CCNGG	7 cut(s)	780, 925, 1184, 2018, 2326, 2499, 2806
SduI	GDGCHC	7 cut(s)	53, 197, 212, 795, 1451, 2297, 2416
SfaNI	GCATC	5 cut(s)	856, 1198, 1755, 2330, 2968
SfcI	CTRYAG	1 cut(s)	1769
SfuI	TTCGAA	1 cut(s)	2692
SinI	GGWCC	4 cut(s)	737, 1180, 1369, 2860
SmiMI	CAYNNNNRTG	4 cut(s)	200, 611, 1323, 1791
SmlI	CTYRAG	1 cut(s)	2212
SmoI	CTYRAG	1 cut(s)	2212
SpeI	ACTAGT	2 cut(s)	383, 1721
SphI	GCATGC	2 cut(s)	1403, 3028
SseBI	AGGCCT	1 cut(s)	2497
SspI	AATATT	1 cut(s)	2598
SspMI	CTAG	5 cut(s)	384, 423, 455, 1722, 2453
SstI	GAGCTC	1 cut(s)	53
StuI	AGGCCT	1 cut(s)	2497
StyD4I	CCNGG	7 cut(s)	778, 923, 1182, 2016, 2324, 2497, 2804
StyI	CCWWGG	1 cut(s)	2679
TaaI	ACNGT	9 cut(s)	18, 1358, 1582, 1595, 1652, 2431, 2551, 2873, 2942
TaiI	ACGT	5 cut(s)	308, 319, 598, 2836, 3125
TaqI	TCGA	7 cut(s)	239, 245, 308, 476, 976, 1164, 2692
TatI	WGTACW	2 cut(s)	579, 3079
TauI	GCSGC	5 cut(s)	116, 167, 289, 292, 295
TfiI	GAWTC	4 cut(s)	32, 1115, 1345, 1502
TscAI	CASTG	7 cut(s)	202, 618, 705, 1110, 1363, 1456, 1758
TseFI	GTSAC	1 cut(s)	3110
TseI	GCWGC	5 cut(s)	161, 869, 1091, 1564, 1768
Tsp45I	GTSAC	1 cut(s)	3110
TspGWI	ACGGA	2 cut(s)	1108, 1855
TspRI	CASTG	7 cut(s)	202, 618, 705, 1110, 1363, 1456, 1758
Van91I	CCANNNNNTGG	2 cut(s)	1713, 2659
VneI	GTGCAC	1 cut(s)	193
VpaK11BI	GGWCC	4 cut(s)	737, 1180, 1369, 2860
XagI	CCTNNNNNAGG	1 cut(s)	2091
XapI	RAATTY	7 cut(s)	23, 1438, 2227, 2262, 2705, 3158, 3200
XceI	RCATGY	6 cut(s)	1322, 1403, 2015, 2049, 2148, 3028
XmnI	GAANNNNTTC	3 cut(s)	2541, 2688, 2705
XspI	CTAG	5 cut(s)	384, 423, 455, 1722, 2453
ZraI	GACGTC	1 cut(s)	306

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.