Rmu_sc0003093.1_g000026

domain in TBC and LysM domain containing proteins

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003093.1
OG0008522
Physical Location & Seq
Reverse (-)
122606 .. 127730
5125 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1482 bp
atgaaattaagggacaagattcttgataacgaccctctcaattctttgaaggtttgcgtgtcacaccccataccttatgttttgaggtttgagaaggtagtgcgcgggacttatgagaagggaacaagagatgatattgaagagttcatatataaattgttggacctaaacggcgatggcattttggggagaaccaggaaagcagaaaagatgggcaacgctcagtcacctcctcacaaagatcctcgctttgcttctgcctccagagctttcactcatactgagcttgaagatctcaagtccctgcttgagtccttggctgctcagtcacacagcgatggccaattcatctctccctcggtttttcagacttatttcgggcttcatggtcctcttggagataggatgtttgatttagtaacccagcaacggaaagaccagaagctcacttttcaagacctggtggtagccaaagggacttatgagaagggaacaagagatgatattgaagagttcatatataaattgttggacctaaacggcgatggcattttggggaggtctgatctggaaggtgttctggttgcaatgtttgaatacatattcaaaacgaaaaactctgaacctggatcaagtacatatcgggaaactgtgaatgcatttcttaatgctgcacggcttacaaagcacgacgaaggacatactgaggaaagtttgtcctttgaagatttcggaacttggtgcactcttcttccttctgtcaggaagttccttggaagcttattgattccacctgatcaaggaaggccaggttctcaggttccacggttattgcaattggaaaacattaattcaaatatgatattattaaatgaggtgtatgcctggcatataggaggaatccttcctcaccaagagctgggagaatggaaactattataccatagtgctgttaatggtctgagcttcaacacatttgtgggaaacatatcaaatgatagagggccaactgtattcattatcaaggataaagatggttatgtatatggaggttatgcttcccaaccgtgggagaggcatggtgatttctatggtgatctgaagtcatttcttttccaattgtatccgaaggcatctatatataggcctactggagcaaacactaatctacaatggtgtgctgtgaatttcggttcagagagcatcccaaatggtattggttttggaggaaaggtgaatcactttggtctcttcctttcggcgaactttgatcagggtcacactttctcgtgtaccacatttggttctccttgcctctccaagaccagccgaatatgcccggaagtaatagaatgctggggagctgttaggaaagcagcagatgaagaaaaactggatggtgctaaaggcactgtattggagaggtttaaggaagatcgtcatatgctcaacatggttgggctcgcaaattccagcgagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
TLD

Protein Analysis

493

Amino Acids

55.22

Weight (kDa)

5.91

Isoelectric Point (pI)

33.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TLD PF07534 285 - 454 6.7e-42 TLDc domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 919
AccII CGCG 1 cut(s) 105
AciI CCGC 1 cut(s) 105
AclWI GGATC 2 cut(s) 236, 637
AcoI YGGCCR 1 cut(s) 340
AcsI RAATTY 2 cut(s) 1186, 1468
AcuI CTGAAG 1 cut(s) 1121
AfaI GTAC 2 cut(s) 637, 1294
AfiI CCNNNNNNNGG 5 cut(s) 429, 800, 919, 1068, 1069
AjnI CCWGG 5 cut(s) 194, 459, 625, 808, 884
AleI CACNNNNGTG 1 cut(s) 977
AluBI AGCT 7 cut(s) 269, 286, 445, 780, 919, 966, 1364
AluI AGCT 7 cut(s) 269, 286, 445, 780, 919, 966, 1364
Alw21I GWGCWC 1 cut(s) 746
Alw26I GTCTC 1 cut(s) 1253
Alw44I GTGCAC 1 cut(s) 742
AlwI GGATC 2 cut(s) 236, 637
AoxI GGCC 4 cut(s) 340, 806, 1004, 1145
ApaLI GTGCAC 1 cut(s) 742
ApeKI GCWGC 3 cut(s) 320, 671, 1376
ApoI RAATTY 2 cut(s) 1186, 1468
AseI ATTAAT 1 cut(s) 849
Asp700I GAANNNNTTC 1 cut(s) 576
AspLEI GCGC 1 cut(s) 105
AspS9I GGNCC 4 cut(s) 163, 389, 532, 1004
AsuC2I CCSGG 1 cut(s) 1340
AsuHPI GGTGA 5 cut(s) 219, 902, 1094, 1106, 1246
AvaII GGWCC 3 cut(s) 163, 389, 532
BaeGI GKGCMC 1 cut(s) 746
BalI TGGCCA 1 cut(s) 342
BanII GRGCYC 1 cut(s) 1464
BauI CACGAG 1 cut(s) 1288
Bbv12I GWGCWC 1 cut(s) 746
BbvI GCAGC 3 cut(s) 307, 658, 1388
BccI CCATC 6 cut(s) 170, 205, 332, 539, 1028, 1391
BceAI ACGGC 3 cut(s) 187, 556, 692
BciT130I CCWGG 5 cut(s) 196, 461, 627, 810, 886
BciVI GTATCC 1 cut(s) 1134
BclI TGATCA 2 cut(s) 796, 1270
BcnI CCSGG 1 cut(s) 1340
BcoDI GTCTC 1 cut(s) 1253
BfuI GTATCC 1 cut(s) 1134
BglII AGATCT 1 cut(s) 292
BisI GCNGC 3 cut(s) 321, 672, 1377
BlsI GCNGC 3 cut(s) 322, 673, 1378
Bme1390I CCNGG 6 cut(s) 196, 461, 627, 810, 886, 1340
Bme18I GGWCC 3 cut(s) 163, 389, 532
BmgT120I GGNCC 4 cut(s) 163, 389, 532, 1004
BmiI GGNNCC 1 cut(s) 822
BmrFI CCNGG 6 cut(s) 196, 461, 627, 810, 886, 1340
BmsI GCATC 2 cut(s) 1142, 1212
BpmI CTGGAG 2 cut(s) 247, 1173
BpuEI CTTGAG 2 cut(s) 281, 329
BpuMI CCSGG 1 cut(s) 1340
BsaI GGTCTC 1 cut(s) 1253
BsaJI CCNNGG 5 cut(s) 315, 357, 772, 824, 1067
BsaXI ACNNNNNCTCC 2 cut(s) 1218, 1248
Bsc4I CCNNNNNNNGG 5 cut(s) 429, 800, 919, 1068, 1069
Bse1I ACTGG 2 cut(s) 1156, 1398
Bse3DI GCAATG 1 cut(s) 594
BseBI CCWGG 5 cut(s) 196, 461, 627, 810, 886
BseDI CCNNGG 5 cut(s) 315, 357, 772, 824, 1067
BseGI GGATG 3 cut(s) 411, 1203, 1402
BseLI CCNNNNNNNGG 5 cut(s) 429, 800, 919, 1068, 1069
BseMI GCAATG 1 cut(s) 594
BseMII CTCAG 6 cut(s) 236, 273, 338, 696, 830, 953
BseNI ACTGG 2 cut(s) 1156, 1398
BseRI GAGGAG 1 cut(s) 222
BseSI GKGCMC 1 cut(s) 746
BseXI GCAGC 3 cut(s) 307, 658, 1388
BseYI CCCAGC 3 cut(s) 423, 919, 1356
BsgI GTGCAG 1 cut(s) 657
Bsh1236I CGCG 1 cut(s) 105
BshFI GGCC 4 cut(s) 342, 808, 1006, 1147
BsiHKAI GWGCWC 1 cut(s) 746
BsiSI CCGG 1 cut(s) 1340
BslFI GGGAC 4 cut(s) 26, 121, 286, 490
BslI CCNNNNNNNGG 5 cut(s) 429, 800, 919, 1068, 1069
BsmAI GTCTC 1 cut(s) 1253
BsmFI GGGAC 4 cut(s) 26, 121, 286, 490
BsmI GAATGC 2 cut(s) 661, 1358
BsnI GGCC 4 cut(s) 342, 808, 1006, 1147
Bso31I GGTCTC 1 cut(s) 1253
Bsp1286I GDGCHC 2 cut(s) 746, 1464
Bsp143I GATC 8 cut(s) 241, 292, 565, 629, 796, 1096, 1270, 1435
BspACI CCGC 1 cut(s) 105
BspANI GGCC 4 cut(s) 342, 808, 1006, 1147
BspCNI CTCAG 6 cut(s) 235, 274, 337, 697, 829, 954
BspFNI CGCG 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 822
BspPI GGATC 2 cut(s) 236, 637
BspTNI GGTCTC 1 cut(s) 1253
BsrDI GCAATG 1 cut(s) 594
BsrI ACTGG 2 cut(s) 1156, 1398
BssECI CCNNGG 5 cut(s) 315, 357, 772, 824, 1067
BssMI GATC 8 cut(s) 241, 292, 565, 629, 796, 1096, 1270, 1435
BssSI CACGAG 1 cut(s) 1288
BssT1I CCWWGG 2 cut(s) 315, 772
Bst2BI CACGAG 1 cut(s) 1288
Bst2UI CCWGG 5 cut(s) 196, 461, 627, 810, 886
Bst4CI ACNGT 5 cut(s) 652, 828, 1012, 1068, 1414
Bst6I CTCTTC 4 cut(s) 135, 504, 753, 1256
BstC8I GCNNGC 1 cut(s) 1464
BstDEI CTNAG 6 cut(s) 222, 282, 324, 705, 816, 962
BstDSI CCRYGG 2 cut(s) 824, 1067
BstENI CCTNNNNNAGG 1 cut(s) 798
BstF5I GGATG 3 cut(s) 411, 1203, 1402
BstFNI CGCG 1 cut(s) 105
BstHHI GCGC 1 cut(s) 105
BstKTI GATC 8 cut(s) 244, 295, 568, 632, 799, 1099, 1273, 1438
BstMAI GTCTC 1 cut(s) 1253
BstMBI GATC 8 cut(s) 241, 292, 565, 629, 796, 1096, 1270, 1435
BstMWI GCNNNNNNNGC 3 cut(s) 266, 685, 1335
BstNI CCWGG 5 cut(s) 196, 461, 627, 810, 886
BstSCI CCNGG 6 cut(s) 194, 459, 625, 808, 884, 1338
BstSLI GKGCMC 1 cut(s) 746
BstUI CGCG 1 cut(s) 105
BstV1I GCAGC 3 cut(s) 307, 658, 1388
BstX2I RGATCY 2 cut(s) 241, 292
BstYI RGATCY 2 cut(s) 241, 292
BsuI GTATCC 1 cut(s) 1134
BsuRI GGCC 4 cut(s) 342, 808, 1006, 1147
BtgI CCRYGG 2 cut(s) 824, 1067
BtgZI GCGATG 3 cut(s) 189, 351, 558
BtsCI GGATG 3 cut(s) 411, 1203, 1402
BtsIMutI CAGTG 1 cut(s) 1410
Cac8I GCNNGC 1 cut(s) 1464
CfoI GCGC 1 cut(s) 105
Cfr13I GGNCC 4 cut(s) 163, 389, 532, 1004
CsiI ACCWGGT 1 cut(s) 459
Csp6I GTAC 2 cut(s) 636, 1293
CspCI CAANNNNNGTGG 2 cut(s) 813, 848
CviAII CATG 3 cut(s) 386, 1079, 1453
CviQI GTAC 2 cut(s) 636, 1293
DdeI CTNAG 6 cut(s) 222, 282, 324, 705, 816, 962
DpnI GATC 8 cut(s) 243, 294, 567, 631, 798, 1098, 1272, 1437
DpnII GATC 8 cut(s) 241, 292, 565, 629, 796, 1096, 1270, 1435
EaeI YGGCCR 1 cut(s) 340
Eam1104I CTCTTC 4 cut(s) 135, 504, 753, 1256
EarI CTCTTC 4 cut(s) 135, 504, 753, 1256
Eco130I CCWWGG 2 cut(s) 315, 772
Eco147I AGGCCT 1 cut(s) 1147
Eco24I GRGCYC 1 cut(s) 1464
Eco31I GGTCTC 1 cut(s) 1253
Eco47I GGWCC 3 cut(s) 163, 389, 532
Eco57I CTGAAG 1 cut(s) 1121
EcoNI CCTNNNNNAGG 1 cut(s) 798
EcoRII CCWGG 5 cut(s) 194, 459, 625, 808, 884
EcoT14I CCWWGG 2 cut(s) 315, 772
EcoT22I ATGCAT 1 cut(s) 661
EcoT38I GRGCYC 1 cut(s) 1464
ErhI CCWWGG 2 cut(s) 315, 772
FaeI CATG 3 cut(s) 389, 1082, 1456
FaqI GGGAC 4 cut(s) 26, 121, 286, 490
FatI CATG 3 cut(s) 385, 1078, 1452
FauI CCCGC 1 cut(s) 98
FauNDI CATATG 1 cut(s) 1443
FbaI TGATCA 2 cut(s) 796, 1270
Fnu4HI GCNGC 3 cut(s) 321, 672, 1377
FokI GGATG 3 cut(s) 418, 1190, 1409
FriOI GRGCYC 1 cut(s) 1464
Fsp4HI GCNGC 3 cut(s) 321, 672, 1377
GlaI GCGC 1 cut(s) 104
GluI GCNGC 3 cut(s) 321, 672, 1377
GsaI CCCAGC 3 cut(s) 427, 923, 1360
GsuI CTGGAG 2 cut(s) 247, 1173
HaeIII GGCC 4 cut(s) 342, 808, 1006, 1147
HapII CCGG 1 cut(s) 1340
HhaI GCGC 1 cut(s) 105
Hin1II CATG 3 cut(s) 389, 1082, 1456
Hin6I GCGC 1 cut(s) 103
HinP1I GCGC 1 cut(s) 103
HindIII AAGCTT 1 cut(s) 778
HinfI GANTC 5 cut(s) 19, 311, 787, 900, 1237
HpaII CCGG 1 cut(s) 1340
HphI GGTGA 5 cut(s) 219, 902, 1094, 1106, 1246
Hpy166II GTNNAC 2 cut(s) 744, 1293
Hpy188I TCNGA 8 cut(s) 369, 565, 622, 734, 963, 1101, 1128, 1198
Hpy188III TCNNGA 6 cut(s) 23, 264, 455, 569, 644, 763
Hpy8I GTNNAC 2 cut(s) 744, 1293
Hpy99I CGWCG 1 cut(s) 695
HpyCH4III ACNGT 5 cut(s) 652, 828, 1012, 1068, 1414
HpyCH4V TGCA 5 cut(s) 587, 659, 674, 744, 835
HpyF10VI GCNNNNNNNGC 3 cut(s) 266, 685, 1335
HpyF3I CTNAG 6 cut(s) 222, 282, 324, 705, 816, 962
Hsp92II CATG 3 cut(s) 389, 1082, 1456
HspAI GCGC 1 cut(s) 103
Ksp22I TGATCA 2 cut(s) 796, 1270
Kzo9I GATC 8 cut(s) 241, 292, 565, 629, 796, 1096, 1270, 1435
LmnI GCTCC 2 cut(s) 1154, 1361
Lsp1109I GCAGC 3 cut(s) 307, 658, 1388
LweI GCATC 2 cut(s) 1142, 1212
MabI ACCWGGT 1 cut(s) 459
MaeIII GTNAC 5 cut(s) 60, 225, 327, 418, 1277
MalI GATC 8 cut(s) 243, 294, 567, 631, 798, 1098, 1272, 1437
MboI GATC 8 cut(s) 241, 292, 565, 629, 796, 1096, 1270, 1435
MboII GAAGA 9 cut(s) 152, 302, 521, 737, 740, 743, 1243, 1397, 1445
MfeI CAATTG 2 cut(s) 836, 1118
MflI RGATCY 2 cut(s) 241, 292
MhlI GDGCHC 2 cut(s) 746, 1464
MlsI TGGCCA 1 cut(s) 342
MluNI TGGCCA 1 cut(s) 342
MlyI GAGTC 1 cut(s) 320
MmeI TCCRAC 2 cut(s) 141, 510
Mox20I TGGCCA 1 cut(s) 342
Mph1103I ATGCAT 1 cut(s) 661
MroXI GAANNNNTTC 1 cut(s) 576
MscI TGGCCA 1 cut(s) 342
MseI TTAA 6 cut(s) 8, 666, 849, 869, 954, 1428
MslI CAYNNNNRTG 2 cut(s) 336, 977
Msp20I TGGCCA 1 cut(s) 342
MspI CCGG 1 cut(s) 1340
MspR9I CCNGG 6 cut(s) 196, 461, 627, 810, 886, 1340
MunI CAATTG 2 cut(s) 836, 1118
Mva1269I GAATGC 2 cut(s) 661, 1358
MvaI CCWGG 5 cut(s) 196, 461, 627, 810, 886
MvnI CGCG 1 cut(s) 105
MwoI GCNNNNNNNGC 3 cut(s) 266, 685, 1335
NciI CCSGG 1 cut(s) 1340
NdeI CATATG 1 cut(s) 1443
NdeII GATC 8 cut(s) 241, 292, 565, 629, 796, 1096, 1270, 1435
NlaIII CATG 3 cut(s) 389, 1082, 1456
NlaIV GGNNCC 1 cut(s) 822
NmuCI GTSAC 4 cut(s) 60, 225, 327, 1277
NsiI ATGCAT 1 cut(s) 661
OliI CACNNNNGTG 1 cut(s) 977
PceI AGGCCT 1 cut(s) 1147
PctI GAATGC 2 cut(s) 661, 1358
PdmI GAANNNNTTC 1 cut(s) 576
PfeI GAWTC 4 cut(s) 19, 787, 900, 1237
PflMI CCANNNNNTGG 1 cut(s) 919
PkrI GCNGC 3 cut(s) 322, 673, 1378
PleI GAGTC 1 cut(s) 319
PpsI GAGTC 1 cut(s) 319
PshBI ATTAAT 1 cut(s) 849
Psp6I CCWGG 5 cut(s) 194, 459, 625, 808, 884
PspFI CCCAGC 3 cut(s) 423, 919, 1356
PspGI CCWGG 5 cut(s) 194, 459, 625, 808, 884
PspN4I GGNNCC 1 cut(s) 822
PspPI GGNCC 4 cut(s) 163, 389, 532, 1004
PsuI RGATCY 2 cut(s) 241, 292
RsaI GTAC 2 cut(s) 637, 1294
RsaNI GTAC 2 cut(s) 636, 1293
RseI CAYNNNNRTG 2 cut(s) 336, 977
SaqAI TTAA 6 cut(s) 8, 666, 849, 869, 954, 1428
SatI GCNGC 3 cut(s) 321, 672, 1377
Sau3AI GATC 8 cut(s) 241, 292, 565, 629, 796, 1096, 1270, 1435
Sau96I GGNCC 4 cut(s) 163, 389, 532, 1004
SchI GAGTC 1 cut(s) 320
ScrFI CCNGG 6 cut(s) 196, 461, 627, 810, 886, 1340
SduI GDGCHC 2 cut(s) 746, 1464
SexAI ACCWGGT 1 cut(s) 459
SfaNI GCATC 2 cut(s) 1142, 1212
SinI GGWCC 3 cut(s) 163, 389, 532
SmiMI CAYNNNNRTG 2 cut(s) 336, 977
SmlI CTYRAG 2 cut(s) 296, 308
SmoI CTYRAG 2 cut(s) 296, 308
SseBI AGGCCT 1 cut(s) 1147
SsiI CCGC 1 cut(s) 105
StuI AGGCCT 1 cut(s) 1147
StyD4I CCNGG 6 cut(s) 194, 459, 625, 808, 884, 1338
StyI CCWWGG 2 cut(s) 315, 772
TaaI ACNGT 5 cut(s) 652, 828, 1012, 1068, 1414
TatI WGTACW 1 cut(s) 635
TfiI GAWTC 4 cut(s) 19, 787, 900, 1237
Tru1I TTAA 6 cut(s) 8, 666, 849, 869, 954, 1428
Tru9I TTAA 6 cut(s) 8, 666, 849, 869, 954, 1428
TscAI CASTG 1 cut(s) 1417
TseFI GTSAC 4 cut(s) 60, 225, 327, 1277
TseI GCWGC 3 cut(s) 320, 671, 1376
Tsp45I GTSAC 4 cut(s) 60, 225, 327, 1277
TspDTI ATGAA 7 cut(s) 17, 136, 337, 374, 505, 1006, 1398
TspGWI ACGGA 1 cut(s) 445
TspRI CASTG 1 cut(s) 1417
Van91I CCANNNNNTGG 1 cut(s) 919
VneI GTGCAC 1 cut(s) 742
VpaK11BI GGWCC 3 cut(s) 163, 389, 532
VspI ATTAAT 1 cut(s) 849
XagI CCTNNNNNAGG 1 cut(s) 798
XapI RAATTY 2 cut(s) 1186, 1468
XmnI GAANNNNTTC 1 cut(s) 576
Zsp2I ATGCAT 1 cut(s) 661
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.