Rmu_sc0003133.1_g000001

Lipase (class 3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003133.1
OG0011011
Physical Location & Seq
Reverse (-)
2 .. 2473
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003133.1_g000001.1.cds

Sequence Viewer

Length: 595 bp
atggaggccgaagcttcaccgtttgagagcagtgagttggtggcgagtttcctggcgtcgacgcctttgctaagcgagtcatggaggctgtgcagcgtcgccaacgcttccgctccattgggtttcgtatcggagcgaatcggagatgtcgggtactttgctttctcggcctgcagtacccaaatgatcacggaggggtcggaatactactccacttgcagaaacttggtgccattggatagcgcaggcgccggcgccggtgacgggcttttttcggtattgaccaaaagtagtaacagtagtatcaatggagaagaagatgagggtgcagtgatggttcatgcagggctgctcaatctcttcttgtttcttcgtagctccccagctttccaagaccagatgttggcgctgataaatggaagcaagtccattgtgatcacaggccattctataggaggaacaactgcctcactctgcgctctttggatcctttgctacctgcaatccgtctcttctaccctttcagtgctttgcattaccttcggttcaccattacttgggaacgaatcgctttcccgagcaatccttagggaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

198

Amino Acids

20.76

Weight (kDa)

4.5

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52430
fragaria_vesca FvH4_1g24940 FvH4_1g24940 FvH4_1g24940
malus_domestica MD15G1136300.v1.1
prunus_persica Prupe.4G276500_v2.0.a1 Prupe.4G276500_v2.0.a1
pyrus_communis pycom15g12290
rosa_chinensis RchiOBHm_Chr2g0122591
rosa_laevigata RLG00000018693
rosa_multiflora Rmu_sc0003133.1_g000001 Rmu_sc0010907.1_g000001
rosa_roxburghii Rroxscaffold_2G00121450
rosa_rugosa Rorug02G0239700 Rorug02G0239800
rosa_samantha Rh2AG298400 Rh2BG307100 Rh2CG285200 Rh2DG322000
rosa_wichuraiana Rw2G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 507
AccB1I GGYRCC 3 cut(s) 229, 248, 254
AccB7I CCANNNNNTGG 2 cut(s) 403, 557
AccBSI CCGCTC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 59
AciI CCGC 1 cut(s) 111
AclWI GGATC 2 cut(s) 481, 494
AcyI GRCGYC 4 cut(s) 56, 62, 249, 255
AfaI GTAC 2 cut(s) 155, 178
AfiI CCNNNNNNNGG 3 cut(s) 264, 403, 557
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 3 cut(s) 14, 378, 386
AluI AGCT 3 cut(s) 14, 378, 386
Alw26I GTCTC 1 cut(s) 514
AlwI GGATC 2 cut(s) 481, 494
Ama87I CYCGRG 1 cut(s) 576
AoxI GGCC 3 cut(s) 6, 168, 442
ApeKI GCWGC 2 cut(s) 93, 349
AspLEI GCGC 5 cut(s) 245, 251, 257, 409, 479
AsuHPI GGTGA 3 cut(s) 9, 272, 540
AvaI CYCGRG 1 cut(s) 576
AxyI CCTNAGG 1 cut(s) 587
BaeI ACNNNNGTAYC 2 cut(s) 286, 319
BamHI GGATCC 1 cut(s) 486
BanI GGYRCC 3 cut(s) 229, 248, 254
BbvI GCAGC 2 cut(s) 105, 336
BccI CCATC 1 cut(s) 328
BcgI CGANNNNNNTGC 4 cut(s) 49, 83, 523, 557
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 2 cut(s) 186, 435
BcoDI GTCTC 1 cut(s) 514
BfmI CTRYAG 2 cut(s) 172, 450
BfoI RGCGCY 3 cut(s) 252, 258, 410
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 2 cut(s) 94, 350
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 2 cut(s) 95, 351
Bme1390I CCNGG 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 576
BmiI GGNNCC 4 cut(s) 231, 250, 256, 488
BmrFI CCNGG 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 71
BsaHI GRCGYC 4 cut(s) 56, 62, 249, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 403, 557
Bse118I RCCGGY 2 cut(s) 251, 257
Bse21I CCTNAGG 1 cut(s) 587
BseBI CCWGG 1 cut(s) 53
BseLI CCNNNNNNNGG 3 cut(s) 264, 403, 557
BseXI GCAGC 2 cut(s) 105, 336
BseYI CCCAGC 1 cut(s) 382
BsgI GTGCAG 2 cut(s) 112, 348
BshFI GGCC 3 cut(s) 8, 170, 444
BshNI GGYRCC 3 cut(s) 229, 248, 254
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 2 cut(s) 252, 258
BslI CCNNNNNNNGG 3 cut(s) 264, 403, 557
BsmAI GTCTC 1 cut(s) 514
BsmBI CGTCTC 1 cut(s) 514
BsnI GGCC 3 cut(s) 8, 170, 444
BsoBI CYCGRG 1 cut(s) 576
Bsp143I GATC 3 cut(s) 186, 435, 486
Bsp1720I GCTNAGC 1 cut(s) 71
BspACI CCGC 1 cut(s) 111
BspANI GGCC 3 cut(s) 8, 170, 444
BspLI GGNNCC 4 cut(s) 231, 250, 256, 488
BspMAI CTGCAG 1 cut(s) 176
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 2 cut(s) 481, 494
BspT107I GGYRCC 3 cut(s) 229, 248, 254
BsrBI CCGCTC 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 251, 257
BssAI RCCGGY 2 cut(s) 251, 257
BssMI GATC 3 cut(s) 186, 435, 486
BssNI GRCGYC 4 cut(s) 56, 62, 249, 255
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 21, 299
Bst6I CTCTTC 2 cut(s) 365, 517
BstACI GRCGYC 4 cut(s) 56, 62, 249, 255
BstC8I GCNNGC 3 cut(s) 172, 247, 253
BstDEI CTNAG 2 cut(s) 71, 587
BstH2I RGCGCY 3 cut(s) 252, 258, 410
BstHHI GCGC 5 cut(s) 245, 251, 257, 409, 479
BstKTI GATC 3 cut(s) 189, 438, 489
BstMAI GTCTC 1 cut(s) 514
BstMBI GATC 3 cut(s) 186, 435, 486
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 2 cut(s) 172, 450
BstV1I GCAGC 2 cut(s) 105, 336
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
Bsu36I CCTNAGG 1 cut(s) 587
BsuRI GGCC 3 cut(s) 8, 170, 444
BtsI GCAGTG 2 cut(s) 37, 336
BtsIMutI CAGTG 3 cut(s) 37, 336, 531
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 172, 247, 253
CfoI GCGC 5 cut(s) 245, 251, 257, 409, 479
Cfr10I RCCGGY 2 cut(s) 251, 257
CseI GACGC 3 cut(s) 45, 70, 85
Csp6I GTAC 2 cut(s) 154, 177
CviAII CATG 2 cut(s) 81, 341
CviJI RGCY 9 cut(s) 8, 14, 88, 170, 268, 349, 378, 386, 444
CviKI_1 RGCY 9 cut(s) 8, 14, 88, 170, 268, 349, 378, 386, 444
CviQI GTAC 2 cut(s) 154, 177
DdeI CTNAG 2 cut(s) 71, 587
DinI GGCGCC 2 cut(s) 250, 256
DpnI GATC 3 cut(s) 188, 437, 488
DpnII GATC 3 cut(s) 186, 435, 486
Eam1104I CTCTTC 2 cut(s) 365, 517
EarI CTCTTC 2 cut(s) 365, 517
Eco81I CCTNAGG 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 51
EgeI GGCGCC 2 cut(s) 250, 256
EheI GGCGCC 2 cut(s) 250, 256
Esp3I CGTCTC 1 cut(s) 514
FaeI CATG 2 cut(s) 84, 344
FaiI YATR 3 cut(s) 82, 342, 452
FatI CATG 2 cut(s) 80, 340
FbaI TGATCA 2 cut(s) 186, 435
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 94, 350
Fsp4HI GCNGC 2 cut(s) 94, 350
GlaI GCGC 5 cut(s) 244, 250, 256, 408, 478
GluI GCNGC 2 cut(s) 94, 350
GsaI CCCAGC 1 cut(s) 386
HaeII RGCGCY 3 cut(s) 252, 258, 410
HaeIII GGCC 3 cut(s) 8, 170, 444
HapII CCGG 2 cut(s) 252, 258
HgaI GACGC 3 cut(s) 45, 70, 85
HhaI GCGC 5 cut(s) 245, 251, 257, 409, 479
Hin1I GRCGYC 4 cut(s) 56, 62, 249, 255
Hin1II CATG 2 cut(s) 84, 344
Hin6I GCGC 5 cut(s) 243, 249, 255, 407, 477
HinP1I GCGC 5 cut(s) 243, 249, 255, 407, 477
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 3 cut(s) 77, 138, 566
HpaII CCGG 2 cut(s) 252, 258
HphI GGTGA 3 cut(s) 9, 272, 540
Hpy166II GTNNAC 2 cut(s) 60, 548
Hpy188I TCNGA 3 cut(s) 133, 143, 202
Hpy188III TCNNGA 1 cut(s) 576
Hpy8I GTNNAC 2 cut(s) 60, 548
Hpy99I CGWCG 3 cut(s) 61, 64, 101
HpyAV CCTTC 1 cut(s) 550
HpyCH4III ACNGT 2 cut(s) 21, 299
HpyCH4V TGCA 7 cut(s) 93, 174, 219, 329, 344, 502, 534
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 2 cut(s) 71, 587
Hsp92I GRCGYC 4 cut(s) 56, 62, 249, 255
Hsp92II CATG 2 cut(s) 84, 344
HspAI GCGC 5 cut(s) 243, 249, 255, 407, 477
KasI GGCGCC 2 cut(s) 248, 254
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Ksp22I TGATCA 2 cut(s) 186, 435
Kzo9I GATC 3 cut(s) 186, 435, 486
LmnI GCTCC 3 cut(s) 118, 133, 383
Lsp1109I GCAGC 2 cut(s) 105, 336
MaeIII GTNAC 2 cut(s) 260, 293
MalI GATC 3 cut(s) 188, 437, 488
MbiI CCGCTC 1 cut(s) 113
MboI GATC 3 cut(s) 186, 435, 486
MboII GAAGA 5 cut(s) 326, 329, 352, 362, 504
MflI RGATCY 1 cut(s) 486
Mly113I GGCGCC 2 cut(s) 249, 255
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 5 cut(s) 78, 187, 316, 449, 478
MreI CGCCGGCG 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 251
MspI CCGG 2 cut(s) 252, 258
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 167
NaeI GCCGGC 1 cut(s) 253
NarI GGCGCC 2 cut(s) 249, 255
NdeII GATC 3 cut(s) 186, 435, 486
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 84, 344
NlaIV GGNNCC 4 cut(s) 231, 250, 256, 488
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 260
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 138, 566
PflMI CCANNNNNTGG 2 cut(s) 403, 557
PkrI GCNGC 2 cut(s) 95, 351
PleI GAGTC 1 cut(s) 85
PluTI GGCGCC 2 cut(s) 252, 258
PpsI GAGTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 382
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 4 cut(s) 231, 250, 256, 488
PstI CTGCAG 1 cut(s) 176
PsuI RGATCY 1 cut(s) 486
RsaI GTAC 2 cut(s) 155, 178
RsaNI GTAC 2 cut(s) 154, 177
SalI GTCGAC 1 cut(s) 58
SatI GCNGC 2 cut(s) 94, 350
Sau3AI GATC 3 cut(s) 186, 435, 486
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 53
SetI ASST 5 cut(s) 16, 380, 388, 501, 542
SfcI CTRYAG 2 cut(s) 172, 450
SfoI GGCGCC 2 cut(s) 250, 256
SgrAI CRCCGGYG 2 cut(s) 251, 257
SgrDI CGTCGACG 1 cut(s) 58
SsiI CCGC 1 cut(s) 111
SspDI GGCGCC 2 cut(s) 248, 254
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 21, 299
TaqI TCGA 1 cut(s) 59
TfiI GAWTC 2 cut(s) 138, 566
TscAI CASTG 3 cut(s) 37, 336, 531
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 2 cut(s) 93, 349
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 2 cut(s) 206, 496
TspRI CASTG 3 cut(s) 37, 336, 531
Van91I CCANNNNNTGG 2 cut(s) 403, 557
XmiI GTMKAC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.