Rmu_sc0010907.1_g000001

Lipase (class 3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0010907.1
OG0011011
Physical Location & Seq
Forward (+)
25 .. 1374
1350 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0010907.1_g000001.1.cds

Sequence Viewer

Length: 1248 bp
atgtctatgtcggcttcttctccaggcaactttggaaagtctccagtacttcaactcggtgaggaagagaaagctcaactcttcagctgcatatcacattctaatttgctagtgtcttcagtagcacaagcagaagcaagagaagagaaagcaaatagtttgtattggccatttggaaactacgtgttttgctcacaagagggagctatttgtgtggagaatgcagcatctgtgatcgggatgatgcatttgatgtttatgactggtaatcccagttgctgtatcgatgatcatctaaaatacggacactatgttgggaagatttcttcacagtttctgaataagaaaagcttcttgcaaggggaagtgattcctgagtcaagctatgaagcaggggttgaactggcattgcagtcatcaggaataagtaaacaggaaccagctgccagaccggcggaagattgcctaaagaaggctaggggaatgagacatatgcgtacaccaagcctcaacgctgcaaacttagccatcagattatccaaggttgtaccttacagagctcaaatagagtggtatatggcatcctgtgataagtctgatgagcaactaggttactacgactccttcaagcaacggggatcatccaaaagggaccacaaagtcaacatgaaccggctcttgcttgctggattttggaatgatgtgctccgcatgctggagaacaacgagctgcctcatgattttcacaagcgatcaaaatgggtaaacacttcccacttttacaagctcctggtagagccactggacattgcagagtattatagatctggtatgcaccggatcaagggtcattacttgaagcatggaagagacaggaggtttgagattttcgacaggtggtggggacagagacaggttggtccagaagaaaacactactagtacgagaagcaaatttgcaggtttgactcaggactcttgcttctgggctaaggtggaggaagctgcagagtggctagctaatgttagaagcgagagtgatgcaaggaagctggctctgctgtgggaaaatatcaataactttgaaaggtatgcaaccagattagttgattgcaaggaggtctctaaagacgttgtagcaaagaattcgagctattctaagtgggtagaagagttgagagaattgaaatctcagatgcagcaaatccatcctcagttcccaaggtttaatggagagttatttccttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

415

Amino Acids

47.61

Weight (kDa)

8.44

Isoelectric Point (pI)

55.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52430
fragaria_vesca FvH4_1g24940 FvH4_1g24940 FvH4_1g24940
malus_domestica MD15G1136300.v1.1
prunus_persica Prupe.4G276500_v2.0.a1 Prupe.4G276500_v2.0.a1
pyrus_communis pycom15g12290
rosa_chinensis RchiOBHm_Chr2g0122591
rosa_laevigata RLG00000018693
rosa_multiflora Rmu_sc0003133.1_g000001 Rmu_sc0010907.1_g000001
rosa_roxburghii Rroxscaffold_2G00121450
rosa_rugosa Rorug02G0239700 Rorug02G0239800
rosa_samantha Rh2AG298400 Rh2BG307100 Rh2CG285200 Rh2DG322000
rosa_wichuraiana Rw2G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 659, 918
Acc36I ACCTGC 1 cut(s) 950
AciI CCGC 2 cut(s) 455, 709
AclWI GGATC 2 cut(s) 646, 848
AcoI YGGCCR 1 cut(s) 167
AcsI RAATTY 2 cut(s) 953, 1144
AcuI CTGAAG 2 cut(s) 67, 102
AfaI GTAC 4 cut(s) 48, 499, 549, 943
AfiI CCNNNNNNNGG 3 cut(s) 472, 715, 844
AflIII ACRYGT 1 cut(s) 183
AgsI TTSAA 6 cut(s) 53, 401, 628, 859, 1085, 1186
AhlI ACTAGT 1 cut(s) 938
AjnI CCWGG 2 cut(s) 22, 789
Alw21I GWGCWC 2 cut(s) 562, 708
Alw26I GTCTC 5 cut(s) 45, 481, 864, 904, 1126
AlwI GGATC 2 cut(s) 646, 848
AlwNI CAGNNNCTG 3 cut(s) 230, 279, 337
AoxI GGCC 1 cut(s) 167
ApeKI GCWGC 7 cut(s) 87, 224, 443, 515, 730, 1004, 1198
ApoI RAATTY 2 cut(s) 953, 1144
ArsI GACNNNNNNTTYG 2 cut(s) 863, 895
Asp700I GAANNNNTTC 2 cut(s) 350, 369
AspS9I GGNCC 2 cut(s) 652, 920
AsuHPI GGTGA 1 cut(s) 71
AsuNHI GCTAGC 1 cut(s) 1015
AvaII GGWCC 2 cut(s) 652, 920
BalI TGGCCA 1 cut(s) 169
BanII GRGCYC 1 cut(s) 562
BbsI GAAGAC 1 cut(s) 108
Bbv12I GWGCWC 2 cut(s) 562, 708
BbvI GCAGC 7 cut(s) 74, 236, 430, 502, 717, 991, 1210
BccI CCATC 2 cut(s) 536, 1215
BcgI CGANNNNNNTGC 4 cut(s) 1022, 1056, 1128, 1162
BciT130I CCWGG 2 cut(s) 24, 791
BclI TGATCA 1 cut(s) 289
BcoDI GTCTC 5 cut(s) 45, 481, 864, 904, 1126
BcuI ACTAGT 1 cut(s) 938
BfaI CTAG 5 cut(s) 110, 477, 608, 939, 1016
BfmI CTRYAG 1 cut(s) 1005
BfuAI ACCTGC 1 cut(s) 950
BglI GCCNNNNNGGC 1 cut(s) 452
BglII AGATCT 1 cut(s) 824
BisI GCNGC 7 cut(s) 88, 225, 444, 516, 731, 1005, 1199
BlsI GCNGC 7 cut(s) 89, 226, 445, 517, 732, 1006, 1200
BmcAI AGTACT 1 cut(s) 48
Bme1390I CCNGG 2 cut(s) 24, 791
Bme18I GGWCC 2 cut(s) 652, 920
BmgT120I GGNCC 2 cut(s) 652, 920
BmiI GGNNCC 2 cut(s) 438, 653
BmrFI CCNGG 2 cut(s) 24, 791
BmrI ACTGGG 1 cut(s) 267
BmsI GCATC 5 cut(s) 234, 236, 590, 1030, 1185
BmtI GCTAGC 1 cut(s) 1019
BmuI ACTGGG 1 cut(s) 267
BpiI GAAGAC 1 cut(s) 108
BpmI CTGGAG 3 cut(s) 6, 27, 737
Bpu10I CCTNAGC 1 cut(s) 990
Bsa29I ATCGAT 1 cut(s) 285
BsaAI YACGTR 1 cut(s) 184
BsaBI GATNNNNATC 1 cut(s) 291
BsaI GGTCTC 1 cut(s) 1126
BsaJI CCNNGG 2 cut(s) 540, 1220
BsaWI WCCGGW 1 cut(s) 837
BsaXI ACNNNNNCTCC 2 cut(s) 605, 635
Bsc4I CCNNNNNNNGG 3 cut(s) 472, 715, 844
Bse118I RCCGGY 2 cut(s) 451, 672
Bse1I ACTGG 5 cut(s) 44, 268, 273, 408, 807
Bse3DI GCAATG 2 cut(s) 407, 807
Bse8I GATNNNNATC 1 cut(s) 291
BseBI CCWGG 2 cut(s) 24, 791
BseCI ATCGAT 1 cut(s) 285
BseDI CCNNGG 2 cut(s) 540, 1220
BseGI GGATG 4 cut(s) 246, 581, 641, 1207
BseJI GATNNNNATC 1 cut(s) 291
BseLI CCNNNNNNNGG 3 cut(s) 472, 715, 844
BseMI GCAATG 2 cut(s) 407, 807
BseMII CTCAG 4 cut(s) 366, 983, 1205, 1226
BseNI ACTGG 5 cut(s) 44, 268, 273, 408, 807
BseXI GCAGC 7 cut(s) 74, 236, 430, 502, 717, 991, 1210
BshFI GGCC 1 cut(s) 169
BshVI ATCGAT 1 cut(s) 285
BsiHKAI GWGCWC 2 cut(s) 562, 708
BsiSI CCGG 3 cut(s) 452, 673, 838
BslFI GGGAC 2 cut(s) 665, 918
BslI CCNNNNNNNGG 3 cut(s) 472, 715, 844
BsmAI GTCTC 5 cut(s) 45, 481, 864, 904, 1126
BsmFI GGGAC 2 cut(s) 665, 918
BsmI GAATGC 1 cut(s) 226
BsnI GGCC 1 cut(s) 169
Bso31I GGTCTC 1 cut(s) 1126
Bsp1286I GDGCHC 2 cut(s) 562, 708
Bsp143I GATC 6 cut(s) 234, 289, 638, 752, 824, 840
BspACI CCGC 2 cut(s) 455, 709
BspANI GGCC 1 cut(s) 169
BspCNI CTCAG 4 cut(s) 367, 982, 1204, 1225
BspDI ATCGAT 1 cut(s) 285
BspHI TCATGA 1 cut(s) 736
BspLI GGNNCC 2 cut(s) 438, 653
BspMAI CTGCAG 1 cut(s) 1009
BspMI ACCTGC 1 cut(s) 950
BspOI GCTAGC 1 cut(s) 1019
BspPI GGATC 2 cut(s) 646, 848
BspTNI GGTCTC 1 cut(s) 1126
BsrDI GCAATG 2 cut(s) 407, 807
BsrFI RCCGGY 2 cut(s) 451, 672
BsrI ACTGG 5 cut(s) 44, 268, 273, 408, 807
BssAI RCCGGY 2 cut(s) 451, 672
BssECI CCNNGG 2 cut(s) 540, 1220
BssMI GATC 6 cut(s) 234, 289, 638, 752, 824, 840
BssT1I CCWWGG 2 cut(s) 540, 1220
Bst2UI CCWGG 2 cut(s) 24, 791
Bst4CI ACNGT 1 cut(s) 333
Bst6I CTCTTC 5 cut(s) 60, 86, 138, 862, 1164
BstBAI YACGTR 1 cut(s) 184
BstC8I GCNNGC 4 cut(s) 684, 713, 1017, 1053
BstDEI CTNAG 8 cut(s) 375, 523, 969, 990, 1158, 1191, 1212, 1245
BstENI CCTNNNNNAGG 1 cut(s) 470
BstF5I GGATG 4 cut(s) 246, 581, 641, 1207
BstKTI GATC 6 cut(s) 237, 292, 641, 755, 827, 843
BstMAI GTCTC 5 cut(s) 45, 481, 864, 904, 1126
BstMBI GATC 6 cut(s) 234, 289, 638, 752, 824, 840
BstMWI GCNNNNNNNGC 4 cut(s) 452, 524, 712, 1057
BstNI CCWGG 2 cut(s) 24, 791
BstNSI RCATGY 1 cut(s) 715
BstSCI CCNGG 2 cut(s) 22, 789
BstSFI CTRYAG 1 cut(s) 1005
BstV1I GCAGC 7 cut(s) 74, 236, 430, 502, 717, 991, 1210
BstV2I GAAGAC 1 cut(s) 108
BstX2I RGATCY 1 cut(s) 824
BstYI RGATCY 1 cut(s) 824
Bsu15I ATCGAT 1 cut(s) 285
BsuRI GGCC 1 cut(s) 169
BsuTUI ATCGAT 1 cut(s) 285
BtsCI GGATG 4 cut(s) 246, 581, 641, 1207
BtsIMutI CAGTG 1 cut(s) 800
BveI ACCTGC 1 cut(s) 950
Cac8I GCNNGC 4 cut(s) 684, 713, 1017, 1053
CaiI CAGNNNCTG 3 cut(s) 230, 279, 337
CciI TCATGA 1 cut(s) 736
Cfr10I RCCGGY 2 cut(s) 451, 672
Cfr13I GGNCC 2 cut(s) 652, 920
ClaI ATCGAT 1 cut(s) 285
Csp6I GTAC 4 cut(s) 47, 498, 548, 942
CspCI CAANNNNNGTGG 2 cut(s) 551, 586
CviAII CATG 4 cut(s) 667, 712, 737, 863
CviQI GTAC 4 cut(s) 47, 498, 548, 942
DdeI CTNAG 8 cut(s) 375, 523, 969, 990, 1158, 1191, 1212, 1245
DpnI GATC 6 cut(s) 236, 291, 640, 754, 826, 842
DpnII GATC 6 cut(s) 234, 289, 638, 752, 824, 840
DrdI GACNNNNNNGTC 2 cut(s) 659, 918
DseDI GACNNNNNNGTC 2 cut(s) 659, 918
EaeI YGGCCR 1 cut(s) 167
Eam1104I CTCTTC 5 cut(s) 60, 86, 138, 862, 1164
EarI CTCTTC 5 cut(s) 60, 86, 138, 862, 1164
EciI GGCGGA 1 cut(s) 470
Ecl136II GAGCTC 1 cut(s) 560
Eco130I CCWWGG 2 cut(s) 540, 1220
Eco24I GRGCYC 1 cut(s) 562
Eco31I GGTCTC 1 cut(s) 1126
Eco47I GGWCC 2 cut(s) 652, 920
Eco53kI GAGCTC 1 cut(s) 560
Eco57I CTGAAG 2 cut(s) 67, 102
EcoICRI GAGCTC 1 cut(s) 560
EcoNI CCTNNNNNAGG 1 cut(s) 470
EcoRI GAATTC 1 cut(s) 1144
EcoRII CCWGG 2 cut(s) 22, 789
EcoT14I CCWWGG 2 cut(s) 540, 1220
EcoT22I ATGCAT 1 cut(s) 249
EcoT38I GRGCYC 1 cut(s) 562
ErhI CCWWGG 2 cut(s) 540, 1220
FaeI CATG 4 cut(s) 670, 715, 740, 866
FalI AAGNNNNNCTT 2 cut(s) 335, 367
FaqI GGGAC 2 cut(s) 665, 918
FatI CATG 4 cut(s) 666, 711, 736, 862
FauNDI CATATG 1 cut(s) 492
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 7 cut(s) 88, 225, 444, 516, 731, 1005, 1199
FokI GGATG 4 cut(s) 253, 568, 628, 1194
FriOI GRGCYC 1 cut(s) 562
Fsp4HI GCNGC 7 cut(s) 88, 225, 444, 516, 731, 1005, 1199
FspBI CTAG 5 cut(s) 110, 477, 608, 939, 1016
GluI GCNGC 7 cut(s) 88, 225, 444, 516, 731, 1005, 1199
GsuI CTGGAG 3 cut(s) 6, 27, 737
HaeIII GGCC 1 cut(s) 169
HapII CCGG 3 cut(s) 452, 673, 838
Hin1II CATG 4 cut(s) 670, 715, 740, 866
HincII GTYRAC 1 cut(s) 664
HindII GTYRAC 1 cut(s) 664
HindIII AAGCTT 1 cut(s) 349
HinfI GANTC 5 cut(s) 370, 377, 620, 967, 974
HpaII CCGG 3 cut(s) 452, 673, 838
HphI GGTGA 1 cut(s) 71
Hpy166II GTNNAC 4 cut(s) 431, 500, 664, 766
Hpy188I TCNGA 4 cut(s) 339, 533, 598, 1194
Hpy188III TCNNGA 6 cut(s) 238, 374, 420, 737, 923, 971
Hpy8I GTNNAC 4 cut(s) 431, 500, 664, 766
HpyAV CCTTC 2 cut(s) 466, 634
HpyCH4III ACNGT 1 cut(s) 333
HpyCH4IV ACGT 2 cut(s) 183, 1131
HpyF10VI GCNNNNNNNGC 4 cut(s) 452, 524, 712, 1057
HpyF3I CTNAG 8 cut(s) 375, 523, 969, 990, 1158, 1191, 1212, 1245
HpySE526I ACGT 2 cut(s) 183, 1131
Hsp92II CATG 4 cut(s) 670, 715, 740, 866
Ksp22I TGATCA 1 cut(s) 289
Kzo9I GATC 6 cut(s) 234, 289, 638, 752, 824, 840
LmnI GCTCC 3 cut(s) 203, 711, 792
Lsp1109I GCAGC 7 cut(s) 74, 236, 430, 502, 717, 991, 1210
LweI GCATC 5 cut(s) 234, 236, 590, 1030, 1185
MaeI CTAG 5 cut(s) 110, 477, 608, 939, 1016
MaeII ACGT 2 cut(s) 183, 1131
MaeIII GTNAC 1 cut(s) 611
MalI GATC 6 cut(s) 236, 291, 640, 754, 826, 842
MboI GATC 6 cut(s) 234, 289, 638, 752, 824, 840
MflI RGATCY 1 cut(s) 824
MhlI GDGCHC 2 cut(s) 562, 708
MlsI TGGCCA 1 cut(s) 169
MluCI AATT 4 cut(s) 103, 953, 1144, 1181
MluNI TGGCCA 1 cut(s) 169
MlyI GAGTC 4 cut(s) 386, 614, 961, 968
MnlI CCTC 8 cut(s) 55, 193, 518, 744, 870, 991, 1111, 1221
Mox20I TGGCCA 1 cut(s) 169
Mph1103I ATGCAT 1 cut(s) 249
MroXI GAANNNNTTC 2 cut(s) 350, 369
MscI TGGCCA 1 cut(s) 169
MseI TTAA 1 cut(s) 1227
Msp20I TGGCCA 1 cut(s) 169
MspA1I CMGCKG 2 cut(s) 87, 443
MspI CCGG 3 cut(s) 452, 673, 838
MspR9I CCNGG 2 cut(s) 24, 791
Mva1269I GAATGC 1 cut(s) 226
MvaI CCWGG 2 cut(s) 24, 791
MwoI GCNNNNNNNGC 4 cut(s) 452, 524, 712, 1057
NdeI CATATG 1 cut(s) 492
NdeII GATC 6 cut(s) 234, 289, 638, 752, 824, 840
NheI GCTAGC 1 cut(s) 1015
NlaIII CATG 4 cut(s) 670, 715, 740, 866
NlaIV GGNNCC 2 cut(s) 438, 653
NsiI ATGCAT 1 cut(s) 249
NspI RCATGY 1 cut(s) 715
PaeI GCATGC 1 cut(s) 715
PagI TCATGA 1 cut(s) 736
PctI GAATGC 1 cut(s) 226
PdmI GAANNNNTTC 2 cut(s) 350, 369
PfeI GAWTC 1 cut(s) 370
PkrI GCNGC 7 cut(s) 89, 226, 445, 517, 732, 1006, 1200
PleI GAGTC 4 cut(s) 385, 614, 961, 968
PpsI GAGTC 4 cut(s) 385, 614, 961, 968
Ppu21I YACGTR 1 cut(s) 184
Psp124BI GAGCTC 1 cut(s) 562
Psp6I CCWGG 2 cut(s) 22, 789
PspGI CCWGG 2 cut(s) 22, 789
PspN4I GGNNCC 2 cut(s) 438, 653
PspPI GGNCC 2 cut(s) 652, 920
PstI CTGCAG 1 cut(s) 1009
PstNI CAGNNNCTG 3 cut(s) 230, 279, 337
PsuI RGATCY 1 cut(s) 824
PvuII CAGCTG 2 cut(s) 87, 443
RsaI GTAC 4 cut(s) 48, 499, 549, 943
RsaNI GTAC 4 cut(s) 47, 498, 548, 942
SacI GAGCTC 1 cut(s) 562
SaqAI TTAA 1 cut(s) 1227
SatI GCNGC 7 cut(s) 88, 225, 444, 516, 731, 1005, 1199
Sau3AI GATC 6 cut(s) 234, 289, 638, 752, 824, 840
Sau96I GGNCC 2 cut(s) 652, 920
ScaI AGTACT 1 cut(s) 48
SchI GAGTC 4 cut(s) 386, 614, 961, 968
ScrFI CCNGG 2 cut(s) 24, 791
SduI GDGCHC 2 cut(s) 562, 708
SfaNI GCATC 5 cut(s) 234, 236, 590, 1030, 1185
SfcI CTRYAG 1 cut(s) 1005
SinI GGWCC 2 cut(s) 652, 920
SpeI ACTAGT 1 cut(s) 938
SphI GCATGC 1 cut(s) 715
Sse9I AATT 4 cut(s) 103, 953, 1144, 1181
SsiI CCGC 2 cut(s) 455, 709
SspMI CTAG 5 cut(s) 110, 477, 608, 939, 1016
SstI GAGCTC 1 cut(s) 562
StyD4I CCNGG 2 cut(s) 22, 789
StyI CCWWGG 2 cut(s) 540, 1220
TaaI ACNGT 1 cut(s) 333
TaiI ACGT 2 cut(s) 186, 1134
TaqI TCGA 3 cut(s) 285, 891, 1148
TasI AATT 4 cut(s) 103, 953, 1144, 1181
TatI WGTACW 1 cut(s) 46
TfiI GAWTC 1 cut(s) 370
Tru1I TTAA 1 cut(s) 1227
Tru9I TTAA 1 cut(s) 1227
TscAI CASTG 1 cut(s) 807
TseI GCWGC 7 cut(s) 87, 224, 443, 515, 730, 1004, 1198
TspDTI ATGAA 2 cut(s) 402, 683
TspGWI ACGGA 1 cut(s) 318
TspRI CASTG 1 cut(s) 807
VpaK11BI GGWCC 2 cut(s) 652, 920
XagI CCTNNNNNAGG 1 cut(s) 470
XapI RAATTY 2 cut(s) 953, 1144
XceI RCATGY 1 cut(s) 715
XmnI GAANNNNTTC 2 cut(s) 350, 369
XspI CTAG 5 cut(s) 110, 477, 608, 939, 1016
ZrmI AGTACT 1 cut(s) 48
Zsp2I ATGCAT 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.