Rorug02G0239800

Lipase (class 3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000002
OG0011011
Physical Location & Seq
Reverse (-)
24561447 .. 24562270
824 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug02G0239800.1

Sequence Viewer

Length: 249 bp
ATGGGAAAGCTTCTGAAAATGAAGCTAGAAGAGGTTTCAGGTAGGACCATGGAGGAGATTGCCAGTGAGACGGAAGCAGCTGCTGCTGCCTACCACATTTTCCTTGATGTTTCTCTGCTTGGTTCCAAGTGCATTGAGGAGGAGGACCTCATGAGGTTCACGATTGAGGAAGAGGTGGAAGTTGCATTTTTGCTGAAGAGCTCTATAAGATTAGCTGGTGAAGGTCTTCAACGCTCGCAGAAGGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

82

Amino Acids

9.16

Weight (kDa)

4.69

Isoelectric Point (pI)

71.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52430
fragaria_vesca FvH4_1g24940 FvH4_1g24940 FvH4_1g24940
malus_domestica MD15G1136300.v1.1
prunus_persica Prupe.4G276500_v2.0.a1 Prupe.4G276500_v2.0.a1
pyrus_communis pycom15g12290
rosa_chinensis RchiOBHm_Chr2g0122591
rosa_laevigata RLG00000018693
rosa_multiflora Rmu_sc0003133.1_g000001 Rmu_sc0010907.1_g000001
rosa_roxburghii Rroxscaffold_2G00121450
rosa_rugosa Rorug02G0239700 Rorug02G0239800
rosa_samantha Rh2AG298400 Rh2BG307100 Rh2CG285200 Rh2DG322000
rosa_wichuraiana Rw2G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcuI CTGAAG 1 cut(s) 215
AgsI TTSAA 1 cut(s) 230
AluBI AGCT 5 cut(s) 10, 25, 80, 201, 215
AluI AGCT 5 cut(s) 10, 25, 80, 201, 215
Alw21I GWGCWC 1 cut(s) 203
Alw26I GTCTC 1 cut(s) 62
AlwNI CAGNNNCTG 1 cut(s) 83
ApeKI GCWGC 4 cut(s) 77, 80, 83, 86
Asp700I GAANNNNTTC 1 cut(s) 225
AspS9I GGNCC 2 cut(s) 45, 145
AsuHPI GGTGA 1 cut(s) 230
AvaII GGWCC 2 cut(s) 45, 145
BanII GRGCYC 1 cut(s) 203
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 203
BbvI GCAGC 4 cut(s) 67, 70, 73, 89
BcoDI GTCTC 1 cut(s) 62
BfaI CTAG 1 cut(s) 26
BisI GCNGC 4 cut(s) 78, 81, 84, 87
BlsI GCNGC 4 cut(s) 79, 82, 85, 88
Bme18I GGWCC 2 cut(s) 45, 145
BmgT120I GGNCC 2 cut(s) 45, 145
BmiI GGNNCC 1 cut(s) 124
BpiI GAAGAC 1 cut(s) 218
BsaJI CCNNGG 1 cut(s) 48
Bse1I ACTGG 1 cut(s) 63
BseDI CCNNGG 1 cut(s) 48
BseNI ACTGG 1 cut(s) 63
BseRI GAGGAG 3 cut(s) 68, 152, 155
BseXI GCAGC 4 cut(s) 67, 70, 73, 89
BsiHKAI GWGCWC 1 cut(s) 203
BsmAI GTCTC 1 cut(s) 62
BsmBI CGTCTC 1 cut(s) 62
Bsp1286I GDGCHC 1 cut(s) 203
Bsp19I CCATGG 1 cut(s) 48
BspHI TCATGA 1 cut(s) 150
BspLI GGNNCC 1 cut(s) 124
BspQI GCTCTTC 1 cut(s) 191
BsrI ACTGG 1 cut(s) 63
BssECI CCNNGG 1 cut(s) 48
BssT1I CCWWGG 1 cut(s) 48
Bst6I CTCTTC 3 cut(s) 24, 165, 191
BstAPI GCANNNNNTGC 1 cut(s) 83
BstC8I GCNNGC 1 cut(s) 236
BstDSI CCRYGG 1 cut(s) 48
BstMAI GTCTC 1 cut(s) 62
BstMWI GCNNNNNNNGC 2 cut(s) 83, 86
BstV1I GCAGC 4 cut(s) 67, 70, 73, 89
BstV2I GAAGAC 1 cut(s) 218
BtgI CCRYGG 1 cut(s) 48
BtsIMutI CAGTG 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 236
CaiI CAGNNNCTG 1 cut(s) 83
CciI TCATGA 1 cut(s) 150
Cfr13I GGNCC 2 cut(s) 45, 145
CviAII CATG 2 cut(s) 49, 151
CviJI RGCY 5 cut(s) 10, 25, 80, 201, 215
CviKI_1 RGCY 5 cut(s) 10, 25, 80, 201, 215
Eam1104I CTCTTC 3 cut(s) 24, 165, 191
EarI CTCTTC 3 cut(s) 24, 165, 191
Ecl136II GAGCTC 1 cut(s) 201
Eco130I CCWWGG 1 cut(s) 48
Eco24I GRGCYC 1 cut(s) 203
Eco47I GGWCC 2 cut(s) 45, 145
Eco53kI GAGCTC 1 cut(s) 201
Eco57I CTGAAG 1 cut(s) 215
EcoICRI GAGCTC 1 cut(s) 201
EcoO109I RGGNCCY 1 cut(s) 145
EcoT14I CCWWGG 1 cut(s) 48
EcoT38I GRGCYC 1 cut(s) 203
ErhI CCWWGG 1 cut(s) 48
Esp3I CGTCTC 1 cut(s) 62
FaeI CATG 2 cut(s) 52, 154
FaiI YATR 3 cut(s) 50, 152, 206
FatI CATG 2 cut(s) 48, 150
Fnu4HI GCNGC 4 cut(s) 78, 81, 84, 87
FriOI GRGCYC 1 cut(s) 203
Fsp4HI GCNGC 4 cut(s) 78, 81, 84, 87
FspBI CTAG 1 cut(s) 26
GluI GCNGC 4 cut(s) 78, 81, 84, 87
Hin1II CATG 2 cut(s) 52, 154
HindIII AAGCTT 1 cut(s) 8
HphI GGTGA 1 cut(s) 230
Hpy166II GTNNAC 1 cut(s) 159
Hpy188I TCNGA 1 cut(s) 15
Hpy188III TCNNGA 2 cut(s) 151, 160
Hpy8I GTNNAC 1 cut(s) 159
HpyAV CCTTC 2 cut(s) 215, 235
HpyCH4V TGCA 2 cut(s) 132, 185
HpyF10VI GCNNNNNNNGC 2 cut(s) 83, 86
Hsp92II CATG 2 cut(s) 52, 154
LguI GCTCTTC 1 cut(s) 191
LpnPI CCDG 3 cut(s) 24, 76, 201
Lsp1109I GCAGC 4 cut(s) 67, 70, 73, 89
MaeI CTAG 1 cut(s) 26
MboII GAAGA 4 cut(s) 41, 182, 208, 218
MhlI GDGCHC 1 cut(s) 203
MnlI CCTC 9 cut(s) 25, 46, 130, 133, 136, 147, 158, 160, 166
MroXI GAANNNNTTC 1 cut(s) 225
MseI TTAA 1 cut(s) 247
MspA1I CMGCKG 1 cut(s) 80
MwoI GCNNNNNNNGC 2 cut(s) 83, 86
NcoI CCATGG 1 cut(s) 48
NlaIII CATG 2 cut(s) 52, 154
NlaIV GGNNCC 1 cut(s) 124
PagI TCATGA 1 cut(s) 150
PciSI GCTCTTC 1 cut(s) 191
PdmI GAANNNNTTC 1 cut(s) 225
PkrI GCNGC 4 cut(s) 79, 82, 85, 88
PpuMI RGGWCCY 1 cut(s) 145
Psp124BI GAGCTC 1 cut(s) 203
Psp5II RGGWCCY 1 cut(s) 145
PspN4I GGNNCC 1 cut(s) 124
PspPI GGNCC 2 cut(s) 45, 145
PspPPI RGGWCCY 1 cut(s) 145
PstNI CAGNNNCTG 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 80
SacI GAGCTC 1 cut(s) 203
SapI GCTCTTC 1 cut(s) 191
SaqAI TTAA 1 cut(s) 247
SatI GCNGC 4 cut(s) 78, 81, 84, 87
Sau96I GGNCC 2 cut(s) 45, 145
SduI GDGCHC 1 cut(s) 203
SinI GGWCC 2 cut(s) 45, 145
SspMI CTAG 1 cut(s) 26
SstI GAGCTC 1 cut(s) 203
StyI CCWWGG 1 cut(s) 48
Tru1I TTAA 1 cut(s) 247
Tru9I TTAA 1 cut(s) 247
TscAI CASTG 1 cut(s) 70
TseI GCWGC 4 cut(s) 77, 80, 83, 86
TspDTI ATGAA 1 cut(s) 35
TspGWI ACGGA 1 cut(s) 86
TspRI CASTG 1 cut(s) 70
VpaK11BI GGWCC 2 cut(s) 45, 145
XmnI GAANNNNTTC 1 cut(s) 225
XspI CTAG 1 cut(s) 26
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.