Rmu_sc0003133.1_g000001

Lipase (class 3)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003133.1
OG0011011
Physical Location & Seq
Reverse (-)
2 .. 2473
2472 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 595 bp
atggaggccgaagcttcaccgtttgagagcagtgagttggtggcgagtttcctggcgtcgacgcctttgctaagcgagtcatggaggctgtgcagcgtcgccaacgcttccgctccattgggtttcgtatcggagcgaatcggagatgtcgggtactttgctttctcggcctgcagtacccaaatgatcacggaggggtcggaatactactccacttgcagaaacttggtgccattggatagcgcaggcgccggcgccggtgacgggcttttttcggtattgaccaaaagtagtaacagtagtatcaatggagaagaagatgagggtgcagtgatggttcatgcagggctgctcaatctcttcttgtttcttcgtagctccccagctttccaagaccagatgttggcgctgataaatggaagcaagtccattgtgatcacaggccattctataggaggaacaactgcctcactctgcgctctttggatcctttgctacctgcaatccgtctcttctaccctttcagtgctttgcattaccttcggttcaccattacttgggaacgaatcgctttcccgagcaatccttagggaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Lipase_3

Protein Analysis

198

Amino Acids

20.76

Weight (kDa)

4.5

Isoelectric Point (pI)

48.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lipase_3 PF01764 105 - 195 7.9e-14 Lipase (class 3)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011011)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G52430
fragaria_vesca FvH4_1g24940 FvH4_1g24940 FvH4_1g24940
malus_domestica MD15G1136300.v1.1
prunus_persica Prupe.4G276500_v2.0.a1 Prupe.4G276500_v2.0.a1
pyrus_communis pycom15g12290
rosa_chinensis RchiOBHm_Chr2g0122591
rosa_laevigata RLG00000018693
rosa_multiflora Rmu_sc0003133.1_g000001 Rmu_sc0010907.1_g000001
rosa_roxburghii Rroxscaffold_2G00121450
rosa_rugosa Rorug02G0239700 Rorug02G0239800
rosa_samantha Rh2AG298400 Rh2BG307100 Rh2CG285200 Rh2DG322000
rosa_wichuraiana Rw2G023720

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 507
AccB1I GGYRCC 3 cut(s) 229, 248, 254
AccB7I CCANNNNNTGG 2 cut(s) 403, 557
AccBSI CCGCTC 1 cut(s) 113
AccI GTMKAC 1 cut(s) 59
AciI CCGC 1 cut(s) 111
AclWI GGATC 2 cut(s) 481, 494
AcyI GRCGYC 4 cut(s) 56, 62, 249, 255
AfaI GTAC 2 cut(s) 155, 178
AfiI CCNNNNNNNGG 3 cut(s) 264, 403, 557
AjnI CCWGG 1 cut(s) 51
AluBI AGCT 3 cut(s) 14, 378, 386
AluI AGCT 3 cut(s) 14, 378, 386
Alw26I GTCTC 1 cut(s) 514
AlwI GGATC 2 cut(s) 481, 494
Ama87I CYCGRG 1 cut(s) 576
AoxI GGCC 3 cut(s) 6, 168, 442
ApeKI GCWGC 2 cut(s) 93, 349
AspLEI GCGC 5 cut(s) 245, 251, 257, 409, 479
AsuHPI GGTGA 3 cut(s) 9, 272, 540
AvaI CYCGRG 1 cut(s) 576
AxyI CCTNAGG 1 cut(s) 587
BaeI ACNNNNGTAYC 2 cut(s) 286, 319
BamHI GGATCC 1 cut(s) 486
BanI GGYRCC 3 cut(s) 229, 248, 254
BbvI GCAGC 2 cut(s) 105, 336
BccI CCATC 1 cut(s) 328
BcgI CGANNNNNNTGC 4 cut(s) 49, 83, 523, 557
BciT130I CCWGG 1 cut(s) 53
BclI TGATCA 2 cut(s) 186, 435
BcoDI GTCTC 1 cut(s) 514
BfmI CTRYAG 2 cut(s) 172, 450
BfoI RGCGCY 3 cut(s) 252, 258, 410
BfuAI ACCTGC 1 cut(s) 507
BisI GCNGC 2 cut(s) 94, 350
BlpI GCTNAGC 1 cut(s) 71
BlsI GCNGC 2 cut(s) 95, 351
Bme1390I CCNGG 1 cut(s) 53
BmeT110I CYCGRG 1 cut(s) 576
BmiI GGNNCC 4 cut(s) 231, 250, 256, 488
BmrFI CCNGG 1 cut(s) 53
Bpu1102I GCTNAGC 1 cut(s) 71
BsaHI GRCGYC 4 cut(s) 56, 62, 249, 255
Bsc4I CCNNNNNNNGG 3 cut(s) 264, 403, 557
Bse118I RCCGGY 2 cut(s) 251, 257
Bse21I CCTNAGG 1 cut(s) 587
BseBI CCWGG 1 cut(s) 53
BseLI CCNNNNNNNGG 3 cut(s) 264, 403, 557
BseXI GCAGC 2 cut(s) 105, 336
BseYI CCCAGC 1 cut(s) 382
BsgI GTGCAG 2 cut(s) 112, 348
BshFI GGCC 3 cut(s) 8, 170, 444
BshNI GGYRCC 3 cut(s) 229, 248, 254
BsiHKCI CYCGRG 1 cut(s) 576
BsiSI CCGG 2 cut(s) 252, 258
BslI CCNNNNNNNGG 3 cut(s) 264, 403, 557
BsmAI GTCTC 1 cut(s) 514
BsmBI CGTCTC 1 cut(s) 514
BsnI GGCC 3 cut(s) 8, 170, 444
BsoBI CYCGRG 1 cut(s) 576
Bsp143I GATC 3 cut(s) 186, 435, 486
Bsp1720I GCTNAGC 1 cut(s) 71
BspACI CCGC 1 cut(s) 111
BspANI GGCC 3 cut(s) 8, 170, 444
BspLI GGNNCC 4 cut(s) 231, 250, 256, 488
BspMAI CTGCAG 1 cut(s) 176
BspMI ACCTGC 1 cut(s) 507
BspPI GGATC 2 cut(s) 481, 494
BspT107I GGYRCC 3 cut(s) 229, 248, 254
BsrBI CCGCTC 1 cut(s) 113
BsrFI RCCGGY 2 cut(s) 251, 257
BssAI RCCGGY 2 cut(s) 251, 257
BssMI GATC 3 cut(s) 186, 435, 486
BssNI GRCGYC 4 cut(s) 56, 62, 249, 255
Bst2UI CCWGG 1 cut(s) 53
Bst4CI ACNGT 2 cut(s) 21, 299
Bst6I CTCTTC 2 cut(s) 365, 517
BstACI GRCGYC 4 cut(s) 56, 62, 249, 255
BstC8I GCNNGC 3 cut(s) 172, 247, 253
BstDEI CTNAG 2 cut(s) 71, 587
BstH2I RGCGCY 3 cut(s) 252, 258, 410
BstHHI GCGC 5 cut(s) 245, 251, 257, 409, 479
BstKTI GATC 3 cut(s) 189, 438, 489
BstMAI GTCTC 1 cut(s) 514
BstMBI GATC 3 cut(s) 186, 435, 486
BstMWI GCNNNNNNNGC 1 cut(s) 167
BstNI CCWGG 1 cut(s) 53
BstSCI CCNGG 1 cut(s) 51
BstSFI CTRYAG 2 cut(s) 172, 450
BstV1I GCAGC 2 cut(s) 105, 336
BstX2I RGATCY 1 cut(s) 486
BstYI RGATCY 1 cut(s) 486
Bsu36I CCTNAGG 1 cut(s) 587
BsuRI GGCC 3 cut(s) 8, 170, 444
BtsI GCAGTG 2 cut(s) 37, 336
BtsIMutI CAGTG 3 cut(s) 37, 336, 531
BveI ACCTGC 1 cut(s) 507
Cac8I GCNNGC 3 cut(s) 172, 247, 253
CfoI GCGC 5 cut(s) 245, 251, 257, 409, 479
Cfr10I RCCGGY 2 cut(s) 251, 257
CseI GACGC 3 cut(s) 45, 70, 85
Csp6I GTAC 2 cut(s) 154, 177
CviAII CATG 2 cut(s) 81, 341
CviJI RGCY 9 cut(s) 8, 14, 88, 170, 268, 349, 378, 386, 444
CviKI_1 RGCY 9 cut(s) 8, 14, 88, 170, 268, 349, 378, 386, 444
CviQI GTAC 2 cut(s) 154, 177
DdeI CTNAG 2 cut(s) 71, 587
DinI GGCGCC 2 cut(s) 250, 256
DpnI GATC 3 cut(s) 188, 437, 488
DpnII GATC 3 cut(s) 186, 435, 486
Eam1104I CTCTTC 2 cut(s) 365, 517
EarI CTCTTC 2 cut(s) 365, 517
Eco81I CCTNAGG 1 cut(s) 587
Eco88I CYCGRG 1 cut(s) 576
EcoRII CCWGG 1 cut(s) 51
EgeI GGCGCC 2 cut(s) 250, 256
EheI GGCGCC 2 cut(s) 250, 256
Esp3I CGTCTC 1 cut(s) 514
FaeI CATG 2 cut(s) 84, 344
FaiI YATR 3 cut(s) 82, 342, 452
FatI CATG 2 cut(s) 80, 340
FbaI TGATCA 2 cut(s) 186, 435
FblI GTMKAC 1 cut(s) 59
Fnu4HI GCNGC 2 cut(s) 94, 350
Fsp4HI GCNGC 2 cut(s) 94, 350
GlaI GCGC 5 cut(s) 244, 250, 256, 408, 478
GluI GCNGC 2 cut(s) 94, 350
GsaI CCCAGC 1 cut(s) 386
HaeII RGCGCY 3 cut(s) 252, 258, 410
HaeIII GGCC 3 cut(s) 8, 170, 444
HapII CCGG 2 cut(s) 252, 258
HgaI GACGC 3 cut(s) 45, 70, 85
HhaI GCGC 5 cut(s) 245, 251, 257, 409, 479
Hin1I GRCGYC 4 cut(s) 56, 62, 249, 255
Hin1II CATG 2 cut(s) 84, 344
Hin6I GCGC 5 cut(s) 243, 249, 255, 407, 477
HinP1I GCGC 5 cut(s) 243, 249, 255, 407, 477
HincII GTYRAC 1 cut(s) 60
HindII GTYRAC 1 cut(s) 60
HindIII AAGCTT 1 cut(s) 12
HinfI GANTC 3 cut(s) 77, 138, 566
HpaII CCGG 2 cut(s) 252, 258
HphI GGTGA 3 cut(s) 9, 272, 540
Hpy166II GTNNAC 2 cut(s) 60, 548
Hpy188I TCNGA 3 cut(s) 133, 143, 202
Hpy188III TCNNGA 1 cut(s) 576
Hpy8I GTNNAC 2 cut(s) 60, 548
Hpy99I CGWCG 3 cut(s) 61, 64, 101
HpyAV CCTTC 1 cut(s) 550
HpyCH4III ACNGT 2 cut(s) 21, 299
HpyCH4V TGCA 7 cut(s) 93, 174, 219, 329, 344, 502, 534
HpyF10VI GCNNNNNNNGC 1 cut(s) 167
HpyF3I CTNAG 2 cut(s) 71, 587
Hsp92I GRCGYC 4 cut(s) 56, 62, 249, 255
Hsp92II CATG 2 cut(s) 84, 344
HspAI GCGC 5 cut(s) 243, 249, 255, 407, 477
KasI GGCGCC 2 cut(s) 248, 254
KroI GCCGGC 1 cut(s) 251
KroNI GCCGGC 1 cut(s) 253
Ksp22I TGATCA 2 cut(s) 186, 435
Kzo9I GATC 3 cut(s) 186, 435, 486
LmnI GCTCC 3 cut(s) 118, 133, 383
Lsp1109I GCAGC 2 cut(s) 105, 336
MaeIII GTNAC 2 cut(s) 260, 293
MalI GATC 3 cut(s) 188, 437, 488
MbiI CCGCTC 1 cut(s) 113
MboI GATC 3 cut(s) 186, 435, 486
MboII GAAGA 5 cut(s) 326, 329, 352, 362, 504
MflI RGATCY 1 cut(s) 486
Mly113I GGCGCC 2 cut(s) 249, 255
MlyI GAGTC 1 cut(s) 86
MmeI TCCRAC 1 cut(s) 180
MnlI CCTC 5 cut(s) 78, 187, 316, 449, 478
MreI CGCCGGCG 1 cut(s) 251
MroNI GCCGGC 1 cut(s) 251
MspI CCGG 2 cut(s) 252, 258
MspR9I CCNGG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 53
MwoI GCNNNNNNNGC 1 cut(s) 167
NaeI GCCGGC 1 cut(s) 253
NarI GGCGCC 2 cut(s) 249, 255
NdeII GATC 3 cut(s) 186, 435, 486
NgoMIV GCCGGC 1 cut(s) 251
NlaIII CATG 2 cut(s) 84, 344
NlaIV GGNNCC 4 cut(s) 231, 250, 256, 488
NmeAIII GCCGAG 1 cut(s) 146
NmuCI GTSAC 1 cut(s) 260
PdiI GCCGGC 1 cut(s) 253
PfeI GAWTC 2 cut(s) 138, 566
PflMI CCANNNNNTGG 2 cut(s) 403, 557
PkrI GCNGC 2 cut(s) 95, 351
PleI GAGTC 1 cut(s) 85
PluTI GGCGCC 2 cut(s) 252, 258
PpsI GAGTC 1 cut(s) 85
Psp6I CCWGG 1 cut(s) 51
PspFI CCCAGC 1 cut(s) 382
PspGI CCWGG 1 cut(s) 51
PspN4I GGNNCC 4 cut(s) 231, 250, 256, 488
PstI CTGCAG 1 cut(s) 176
PsuI RGATCY 1 cut(s) 486
RsaI GTAC 2 cut(s) 155, 178
RsaNI GTAC 2 cut(s) 154, 177
SalI GTCGAC 1 cut(s) 58
SatI GCNGC 2 cut(s) 94, 350
Sau3AI GATC 3 cut(s) 186, 435, 486
SchI GAGTC 1 cut(s) 86
ScrFI CCNGG 1 cut(s) 53
SetI ASST 5 cut(s) 16, 380, 388, 501, 542
SfcI CTRYAG 2 cut(s) 172, 450
SfoI GGCGCC 2 cut(s) 250, 256
SgrAI CRCCGGYG 2 cut(s) 251, 257
SgrDI CGTCGACG 1 cut(s) 58
SsiI CCGC 1 cut(s) 111
SspDI GGCGCC 2 cut(s) 248, 254
StyD4I CCNGG 1 cut(s) 51
TaaI ACNGT 2 cut(s) 21, 299
TaqI TCGA 1 cut(s) 59
TfiI GAWTC 2 cut(s) 138, 566
TscAI CASTG 3 cut(s) 37, 336, 531
TseFI GTSAC 1 cut(s) 260
TseI GCWGC 2 cut(s) 93, 349
Tsp45I GTSAC 1 cut(s) 260
TspDTI ATGAA 1 cut(s) 329
TspGWI ACGGA 2 cut(s) 206, 496
TspRI CASTG 3 cut(s) 37, 336, 531
Van91I CCANNNNNTGG 2 cut(s) 403, 557
XmiI GTMKAC 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.