Rmu_sc0003177.1_g000002

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003177.1
OG0009944
Physical Location & Seq
Forward (+)
8359 .. 9703
1345 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 951 bp
atgatcttatttgcattgagttcggttgtgaaagcccaattgagtacggatttctaccagcaaacatgtccaaatcttctcaaaatcgtccggacagaggttcagaatgctatcaaatccgaaatgcgaatggctgcttctttgcttcggcttcacttccacgactgctttgtcaacggttgtgatgcgtcgatactactcgatttacctgatggtgagaagtctgcctttccgaacgtgaattcagcgagagggtttgaagttatcgatgcaatcaaaagctccgtggagagcgcatgtagtggagttgtttcttgtgctgatatactaaccatagctgcccgagattctgtggtcttaagtggaggaaattcatggaaagttttgctgggaagaagagacgggtttgtggcaaaccagacaggagcaaatgttgggcttccttctccatttgacacacttgatgccatcatttccaagttcgccactgtaggcctaaatgtcacagacgtggtagccttatcaggagctcatacaattgggttagcaaggtgtgcaactttcagcaacagattgttcaacttccaaggaacaggtggtccagacagcacgttagattcaagtatggcaactgaactacagaacctatgccctgtgaccagcgacggaaacaacactgcggctcttgatcggaactctagagatttattcgacaacctttactttcagaacttgctcaccggaaagggccttctcggttctgatcagattttattttctagtgatttagccgatacaacaagtaccaagagcttggtccaaagctatagctctagttccaaccttttcctgacagattttgctaattctatgatcaaaatgggaagtataggtccactcaccgggtctgctggagagataagaaagaactgcagggttgttaattcttga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

316

Amino Acids

33.52

Weight (kDa)

5.21

Isoelectric Point (pI)

30.04

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 30 - 278 4.5e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 170
AccIII TCCGGA 1 cut(s) 90
AciI CCGC 1 cut(s) 680
AcsI RAATTY 2 cut(s) 241, 370
AfaI GTAC 2 cut(s) 46, 805
AfiI CCNNNNNNNGG 2 cut(s) 97, 902
AflII CTTAAG 1 cut(s) 358
AflIII ACRYGT 1 cut(s) 65
AgsI TTSAA 3 cut(s) 260, 580, 621
AjiI CACGTC 1 cut(s) 511
AleI CACNNNNGTG 1 cut(s) 509
AloI GAACNNNNNNTCC 2 cut(s) 583, 615
AluBI AGCT 6 cut(s) 282, 338, 530, 813, 825, 831
AluI AGCT 6 cut(s) 282, 338, 530, 813, 825, 831
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 1 cut(s) 393
Ama87I CYCGRG 1 cut(s) 342
Aor13HI TCCGGA 1 cut(s) 90
AoxI GGCC 2 cut(s) 493, 748
ApeKI GCWGC 2 cut(s) 134, 338
ApoI RAATTY 2 cut(s) 241, 370
AspLEI GCGC 1 cut(s) 296
AspS9I GGNCC 4 cut(s) 599, 748, 817, 893
AsuC2I CCSGG 1 cut(s) 904
AsuHPI GGTGA 3 cut(s) 227, 730, 892
AvaI CYCGRG 1 cut(s) 342
AvaII GGWCC 3 cut(s) 599, 817, 893
BanII GRGCYC 1 cut(s) 532
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 2 cut(s) 121, 325
BccI CCATC 2 cut(s) 206, 476
BcgI CGANNNNNNTGC 1 cut(s) 37
BclI TGATCA 2 cut(s) 763, 873
BcnI CCSGG 1 cut(s) 904
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 3 cut(s) 699, 780, 834
BfmI CTRYAG 4 cut(s) 489, 638, 826, 931
BfrI CTTAAG 1 cut(s) 358
BisI GCNGC 3 cut(s) 135, 339, 681
BlsI GCNGC 3 cut(s) 136, 340, 682
Bme1390I CCNGG 1 cut(s) 904
Bme18I GGWCC 3 cut(s) 599, 817, 893
BmeT110I CYCGRG 1 cut(s) 342
BmgBI CACGTC 1 cut(s) 511
BmgT120I GGNCC 4 cut(s) 599, 748, 817, 893
BmrFI CCNGG 1 cut(s) 904
BmsI GCATC 3 cut(s) 175, 259, 454
BpmI CTGGAG 1 cut(s) 933
BpuMI CCSGG 1 cut(s) 904
Bsa29I ATCGAT 1 cut(s) 267
BsaJI CCNNGG 2 cut(s) 285, 586
BsaWI WCCGGW 2 cut(s) 90, 740
BsaXI ACNNNNNCTCC 2 cut(s) 417, 447
Bsc4I CCNNNNNNNGG 2 cut(s) 97, 902
BseAI TCCGGA 1 cut(s) 90
BseCI ATCGAT 1 cut(s) 267
BseDI CCNNGG 2 cut(s) 285, 586
BseLI CCNNNNNNNGG 2 cut(s) 97, 902
BseXI GCAGC 2 cut(s) 121, 325
BseYI CCCAGC 1 cut(s) 388
BshFI GGCC 2 cut(s) 495, 750
BshVI ATCGAT 1 cut(s) 267
BsiHKAI GWGCWC 1 cut(s) 532
BsiHKCI CYCGRG 1 cut(s) 342
BsiSI CCGG 3 cut(s) 91, 741, 903
BslI CCNNNNNNNGG 2 cut(s) 97, 902
BsmAI GTCTC 1 cut(s) 393
BsmBI CGTCTC 1 cut(s) 393
BsmI GAATGC 1 cut(s) 112
BsnI GGCC 2 cut(s) 495, 750
BsoBI CYCGRG 1 cut(s) 342
Bsp1286I GDGCHC 1 cut(s) 532
Bsp13I TCCGGA 1 cut(s) 90
Bsp143I GATC 4 cut(s) 3, 688, 763, 873
BspACI CCGC 1 cut(s) 680
BspANI GGCC 2 cut(s) 495, 750
BspDI ATCGAT 1 cut(s) 267
BspEI TCCGGA 1 cut(s) 90
BspMAI CTGCAG 1 cut(s) 935
BspTI CTTAAG 1 cut(s) 358
BssECI CCNNGG 2 cut(s) 285, 586
BssMI GATC 4 cut(s) 3, 688, 763, 873
BssT1I CCWWGG 1 cut(s) 586
Bst4CI ACNGT 2 cut(s) 179, 490
Bst6I CTCTTC 1 cut(s) 391
BstAFI CTTAAG 1 cut(s) 358
BstAPI GCANNNNNTGC 1 cut(s) 554
BstDSI CCRYGG 1 cut(s) 285
BstHHI GCGC 1 cut(s) 296
BstKTI GATC 4 cut(s) 6, 691, 766, 876
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 4 cut(s) 3, 688, 763, 873
BstMWI GCNNNNNNNGC 1 cut(s) 554
BstNSI RCATGY 2 cut(s) 69, 300
BstSCI CCNGG 1 cut(s) 902
BstSFI CTRYAG 4 cut(s) 489, 638, 826, 931
BstV1I GCAGC 2 cut(s) 121, 325
BstXI CCANNNNNNTGG 1 cut(s) 814
Bsu15I ATCGAT 1 cut(s) 267
BsuRI GGCC 2 cut(s) 495, 750
BsuTUI ATCGAT 1 cut(s) 267
BtgI CCRYGG 1 cut(s) 285
BtrI CACGTC 1 cut(s) 511
BtsI GCAGTG 1 cut(s) 675
BtsIMutI CAGTG 2 cut(s) 486, 675
CfoI GCGC 1 cut(s) 296
Cfr13I GGNCC 4 cut(s) 599, 748, 817, 893
ClaI ATCGAT 1 cut(s) 267
CseI GACGC 1 cut(s) 177
Csp6I GTAC 2 cut(s) 45, 804
CviAII CATG 3 cut(s) 66, 297, 375
CviQI GTAC 2 cut(s) 45, 804
DpnI GATC 4 cut(s) 5, 690, 765, 875
DpnII GATC 4 cut(s) 3, 688, 763, 873
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
Eam1104I CTCTTC 1 cut(s) 391
EarI CTCTTC 1 cut(s) 391
Ecl136II GAGCTC 1 cut(s) 530
Eco130I CCWWGG 1 cut(s) 586
Eco147I AGGCCT 1 cut(s) 495
Eco24I GRGCYC 1 cut(s) 532
Eco47I GGWCC 3 cut(s) 599, 817, 893
Eco53kI GAGCTC 1 cut(s) 530
Eco88I CYCGRG 1 cut(s) 342
EcoICRI GAGCTC 1 cut(s) 530
EcoO109I RGGNCCY 1 cut(s) 748
EcoRI GAATTC 1 cut(s) 241
EcoT14I CCWWGG 1 cut(s) 586
EcoT38I GRGCYC 1 cut(s) 532
ErhI CCWWGG 1 cut(s) 586
Esp3I CGTCTC 1 cut(s) 393
FaeI CATG 3 cut(s) 69, 300, 378
FalI AAGNNNNNCTT 2 cut(s) 212, 244
FatI CATG 3 cut(s) 65, 296, 374
FbaI TGATCA 2 cut(s) 763, 873
Fnu4HI GCNGC 3 cut(s) 135, 339, 681
FriOI GRGCYC 1 cut(s) 532
Fsp4HI GCNGC 3 cut(s) 135, 339, 681
FspBI CTAG 3 cut(s) 699, 780, 834
GlaI GCGC 1 cut(s) 295
GluI GCNGC 3 cut(s) 135, 339, 681
GsaI CCCAGC 1 cut(s) 392
GsuI CTGGAG 1 cut(s) 933
HaeIII GGCC 2 cut(s) 495, 750
HapII CCGG 3 cut(s) 91, 741, 903
HgaI GACGC 1 cut(s) 177
HhaI GCGC 1 cut(s) 296
Hin1II CATG 3 cut(s) 69, 300, 378
Hin6I GCGC 1 cut(s) 294
HinP1I GCGC 1 cut(s) 294
HincII GTYRAC 1 cut(s) 175
HindII GTYRAC 1 cut(s) 175
HinfI GANTC 2 cut(s) 347, 617
HpaII CCGG 3 cut(s) 91, 741, 903
HphI GGTGA 3 cut(s) 227, 730, 892
Hpy166II GTNNAC 2 cut(s) 175, 896
Hpy188I TCNGA 7 cut(s) 105, 121, 234, 693, 729, 763, 768
Hpy188III TCNNGA 7 cut(s) 91, 525, 602, 686, 699, 850, 948
Hpy8I GTNNAC 2 cut(s) 175, 896
Hpy99I CGWCG 2 cut(s) 193, 668
HpyAV CCTTC 2 cut(s) 453, 761
HpyCH4III ACNGT 2 cut(s) 179, 490
HpyCH4IV ACGT 3 cut(s) 237, 510, 611
HpyCH4V TGCA 4 cut(s) 14, 272, 557, 933
HpyF10VI GCNNNNNNNGC 1 cut(s) 554
HpySE526I ACGT 3 cut(s) 237, 510, 611
Hsp92II CATG 3 cut(s) 69, 300, 378
HspAI GCGC 1 cut(s) 294
Kpn2I TCCGGA 1 cut(s) 90
Ksp22I TGATCA 2 cut(s) 763, 873
Kzo9I GATC 4 cut(s) 3, 688, 763, 873
LmnI GCTCC 3 cut(s) 287, 425, 527
Lsp1109I GCAGC 2 cut(s) 121, 325
LweI GCATC 3 cut(s) 175, 259, 454
MaeI CTAG 3 cut(s) 699, 780, 834
MaeII ACGT 3 cut(s) 237, 510, 611
MaeIII GTNAC 2 cut(s) 502, 655
MalI GATC 4 cut(s) 5, 690, 765, 875
MboI GATC 4 cut(s) 3, 688, 763, 873
MboII GAAGA 3 cut(s) 68, 405, 408
MfeI CAATTG 2 cut(s) 38, 537
MhlI GDGCHC 1 cut(s) 532
MluCI AATT 6 cut(s) 38, 241, 370, 537, 865, 943
MmeI TCCRAC 1 cut(s) 864
MnlI CCTC 3 cut(s) 91, 245, 359
MroI TCCGGA 1 cut(s) 90
MseI TTAA 2 cut(s) 359, 942
MslI CAYNNNNRTG 1 cut(s) 509
MspCI CTTAAG 1 cut(s) 358
MspI CCGG 3 cut(s) 91, 741, 903
MspR9I CCNGG 1 cut(s) 904
MunI CAATTG 2 cut(s) 38, 537
Mva1269I GAATGC 1 cut(s) 112
MwoI GCNNNNNNNGC 1 cut(s) 554
NciI CCSGG 1 cut(s) 904
NdeII GATC 4 cut(s) 3, 688, 763, 873
NlaIII CATG 3 cut(s) 69, 300, 378
NmuCI GTSAC 2 cut(s) 502, 655
NspI RCATGY 2 cut(s) 69, 300
OliI CACNNNNGTG 1 cut(s) 509
PceI AGGCCT 1 cut(s) 495
PciI ACATGT 1 cut(s) 65
PctI GAATGC 1 cut(s) 112
PfeI GAWTC 2 cut(s) 347, 617
PkrI GCNGC 3 cut(s) 136, 340, 682
PscI ACATGT 1 cut(s) 65
Psp124BI GAGCTC 1 cut(s) 532
PspFI CCCAGC 1 cut(s) 388
PspPI GGNCC 4 cut(s) 599, 748, 817, 893
PstI CTGCAG 1 cut(s) 935
RsaI GTAC 2 cut(s) 46, 805
RsaNI GTAC 2 cut(s) 45, 804
RseI CAYNNNNRTG 1 cut(s) 509
SacI GAGCTC 1 cut(s) 532
SaqAI TTAA 2 cut(s) 359, 942
SatI GCNGC 3 cut(s) 135, 339, 681
Sau3AI GATC 4 cut(s) 3, 688, 763, 873
Sau96I GGNCC 4 cut(s) 599, 748, 817, 893
ScrFI CCNGG 1 cut(s) 904
SduI GDGCHC 1 cut(s) 532
SfaNI GCATC 3 cut(s) 175, 259, 454
SfcI CTRYAG 4 cut(s) 489, 638, 826, 931
SinI GGWCC 3 cut(s) 599, 817, 893
SmiMI CAYNNNNRTG 1 cut(s) 509
SmlI CTYRAG 1 cut(s) 358
SmoI CTYRAG 1 cut(s) 358
Sse9I AATT 6 cut(s) 38, 241, 370, 537, 865, 943
SseBI AGGCCT 1 cut(s) 495
SsiI CCGC 1 cut(s) 680
SspMI CTAG 3 cut(s) 699, 780, 834
SstI GAGCTC 1 cut(s) 532
StuI AGGCCT 1 cut(s) 495
StyD4I CCNGG 1 cut(s) 902
StyI CCWWGG 1 cut(s) 586
TaaI ACNGT 2 cut(s) 179, 490
TaiI ACGT 3 cut(s) 240, 513, 614
TaqI TCGA 4 cut(s) 191, 201, 267, 711
TasI AATT 6 cut(s) 38, 241, 370, 537, 865, 943
TauI GCSGC 1 cut(s) 683
TfiI GAWTC 2 cut(s) 347, 617
Tru1I TTAA 2 cut(s) 359, 942
Tru9I TTAA 2 cut(s) 359, 942
TscAI CASTG 2 cut(s) 493, 682
TseFI GTSAC 2 cut(s) 502, 655
TseI GCWGC 2 cut(s) 134, 338
Tsp45I GTSAC 2 cut(s) 502, 655
TspDTI ATGAA 1 cut(s) 363
TspGWI ACGGA 3 cut(s) 62, 274, 681
TspRI CASTG 2 cut(s) 493, 682
Vha464I CTTAAG 1 cut(s) 358
VpaK11BI GGWCC 3 cut(s) 599, 817, 893
XapI RAATTY 2 cut(s) 241, 370
XbaI TCTAGA 1 cut(s) 698
XceI RCATGY 2 cut(s) 69, 300
XcmI CCANNNNNNNNNTGG 1 cut(s) 593
XspI CTAG 3 cut(s) 699, 780, 834
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.