Rmu_sc0003547.1_g000007

Belongs to the DHHC palmitoyltransferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003547.1
OG0006397
Physical Location & Seq
Forward (+)
33143 .. 35544
2402 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1008 bp
atgcttgaaacacagaaccggagcaatcccctaagtcggtccaagctaattggccgttgcatagtctcctgtatcttcgtctttctcactcacttggctctctctgtgatccctcgcttcttctccgctttctcctttgtaacccaactcgctctctcggctctgctgcttctgctgctcgtgggttttggcggatggtgcagaagaacgcttcttagagcaaaagcttcggctccggctttggtcttcttcaatattctcttcatttgggggttttacttctctgttatccgaccagctgtgccgcaactaaacgatgccgttttcaactgtggagtcgtgttcctcgttattgatactgatagtaataatggtgttgtcaatggcagtatcataacaagtgaccctggcattgttacaaatgggtctgcctctccagaacagcctatggagagctcactttctcaagttgataaggagttggagcccttagcaagtggtttaggccatgagttgactcatgattccgggttgttaatgagggtaagatactgcaaaacctgcaaggcatacataaagggtcttgaccatcattgtcctgcttttgggaattgtataggccaaaataatcatcgccttttcttaattcttctgtttggatttatcggtactgaagcttcttatctagtgtgctcatctctctttgcggccaaatccaggatcttggatagaccctcggagcttactctttctgaaagtttagctgttagcacaattctgttcaccattctccaactgctatggcaggtggtctttttgatatggcacatatattgtttatgcgtgaacatcagaactgatgagtggataaaatggaagaagtatccagagttccaacttgttattccacctgaaccaggacaaagcttcagaaatattaggttctggaatccatatgacaaaggcattgtacagaatgtgaaggagtttctagccatccagcattaa

Protein Analysis

335

Amino Acids

37.61

Weight (kDa)

8.63

Isoelectric Point (pI)

39.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DHHC PF01529 181 - 293 1.8e-20 DHHC palmitoyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 796
Acc36I ACCTGC 2 cut(s) 569, 796
AciI CCGC 4 cut(s) 126, 192, 305, 707
AclWI GGATC 2 cut(s) 103, 728
AcoI YGGCCR 2 cut(s) 52, 708
AcuI CTGAAG 2 cut(s) 693, 913
AfaI GTAC 2 cut(s) 670, 972
AfiI CCNNNNNNNGG 4 cut(s) 36, 605, 717, 917
AgsI TTSAA 3 cut(s) 8, 253, 328
AjnI CCWGG 3 cut(s) 406, 716, 916
AjuI GAANNNNNNNTTGG 2 cut(s) 888, 920
AluBI AGCT 8 cut(s) 46, 227, 299, 456, 677, 742, 764, 927
AluI AGCT 8 cut(s) 46, 227, 299, 456, 677, 742, 764, 927
Alw21I GWGCWC 2 cut(s) 458, 695
Alw26I GTCTC 1 cut(s) 70
AlwI GGATC 2 cut(s) 103, 728
AoxI GGCC 4 cut(s) 52, 505, 619, 708
ApeKI GCWGC 2 cut(s) 166, 175
AspS9I GGNCC 1 cut(s) 39
AsuC2I CCSGG 1 cut(s) 529
AsuHPI GGTGA 1 cut(s) 775
AvaII GGWCC 1 cut(s) 39
BanII GRGCYC 2 cut(s) 458, 489
BarI GAAGNNNNNNTAC 2 cut(s) 661, 693
BauI CACGAG 1 cut(s) 179
BbsI GAAGAC 1 cut(s) 238
Bbv12I GWGCWC 2 cut(s) 458, 695
BbvI GCAGC 2 cut(s) 153, 162
BccI CCATC 3 cut(s) 189, 597, 1004
BceAI ACGGC 2 cut(s) 39, 305
BcgI CGANNNNNNTGC 2 cut(s) 210, 244
BciT130I CCWGG 3 cut(s) 408, 718, 918
BciVI GTATCC 1 cut(s) 894
BcnI CCSGG 1 cut(s) 529
BcoDI GTCTC 1 cut(s) 70
BfaI CTAG 2 cut(s) 686, 992
BfuAI ACCTGC 2 cut(s) 569, 796
BfuI GTATCC 1 cut(s) 894
BisI GCNGC 4 cut(s) 167, 176, 305, 708
BlsI GCNGC 4 cut(s) 168, 177, 306, 709
Bme1390I CCNGG 4 cut(s) 408, 529, 718, 918
Bme18I GGWCC 1 cut(s) 39
BmgT120I GGNCC 1 cut(s) 39
BmiI GGNNCC 2 cut(s) 234, 486
BmrFI CCNGG 4 cut(s) 408, 529, 718, 918
BmsI GCATC 1 cut(s) 307
BpiI GAAGAC 1 cut(s) 238
BpmI CTGGAG 1 cut(s) 420
Bpu10I CCTNAGC 1 cut(s) 490
BpuEI CTTGAG 1 cut(s) 450
BpuMI CCSGG 1 cut(s) 529
BsaJI CCNNGG 2 cut(s) 406, 735
BsaWI WCCGGW 1 cut(s) 18
Bsc4I CCNNNNNNNGG 4 cut(s) 36, 605, 717, 917
BseBI CCWGG 3 cut(s) 408, 718, 918
BseDI CCNNGG 2 cut(s) 406, 735
BseGI GGATG 2 cut(s) 200, 996
BseLI CCNNNNNNNGG 4 cut(s) 36, 605, 717, 917
BseXI GCAGC 2 cut(s) 153, 162
BsgI GTGCAG 1 cut(s) 220
BshFI GGCC 4 cut(s) 54, 507, 621, 710
BsiHKAI GWGCWC 2 cut(s) 458, 695
BsiSI CCGG 3 cut(s) 19, 236, 528
BslI CCNNNNNNNGG 4 cut(s) 36, 605, 717, 917
BsmAI GTCTC 1 cut(s) 70
BsnI GGCC 4 cut(s) 54, 507, 621, 710
Bsp1286I GDGCHC 3 cut(s) 458, 489, 695
Bsp1407I TGTACA 1 cut(s) 970
Bsp143I GATC 2 cut(s) 108, 720
BspACI CCGC 4 cut(s) 126, 192, 305, 707
BspANI GGCC 4 cut(s) 54, 507, 621, 710
BspHI TCATGA 1 cut(s) 520
BspLI GGNNCC 2 cut(s) 234, 486
BspMI ACCTGC 2 cut(s) 569, 796
BspPI GGATC 2 cut(s) 103, 728
BsrGI TGTACA 1 cut(s) 970
BssECI CCNNGG 2 cut(s) 406, 735
BssMI GATC 2 cut(s) 108, 720
BssSI CACGAG 1 cut(s) 179
Bst2BI CACGAG 1 cut(s) 179
Bst2UI CCWGG 3 cut(s) 408, 718, 918
Bst4CI ACNGT 1 cut(s) 332
Bst6I CTCTTC 1 cut(s) 266
BstAPI GCANNNNNTGC 1 cut(s) 561
BstAUI TGTACA 1 cut(s) 970
BstDEI CTNAG 3 cut(s) 32, 215, 490
BstENI CCTNNNNNAGG 1 cut(s) 915
BstF5I GGATG 2 cut(s) 200, 996
BstKTI GATC 2 cut(s) 111, 723
BstMAI GTCTC 1 cut(s) 70
BstMBI GATC 2 cut(s) 108, 720
BstMWI GCNNNNNNNGC 5 cut(s) 158, 172, 175, 198, 561
BstNI CCWGG 3 cut(s) 408, 718, 918
BstSCI CCNGG 4 cut(s) 406, 527, 716, 916
BstV1I GCAGC 2 cut(s) 153, 162
BstV2I GAAGAC 1 cut(s) 238
BstX2I RGATCY 1 cut(s) 720
BstXI CCANNNNNNTGG 1 cut(s) 724
BstYI RGATCY 1 cut(s) 720
BsuI GTATCC 1 cut(s) 894
BsuRI GGCC 4 cut(s) 54, 507, 621, 710
BtgZI GCGATG 1 cut(s) 617
BtsCI GGATG 2 cut(s) 200, 996
BveI ACCTGC 2 cut(s) 569, 796
CciI TCATGA 1 cut(s) 520
Cfr13I GGNCC 1 cut(s) 39
Csp6I GTAC 2 cut(s) 669, 971
CviAII CATG 2 cut(s) 509, 521
CviQI GTAC 2 cut(s) 669, 971
DdeI CTNAG 3 cut(s) 32, 215, 490
DpnI GATC 2 cut(s) 110, 722
DpnII GATC 2 cut(s) 108, 720
EaeI YGGCCR 2 cut(s) 52, 708
Eam1104I CTCTTC 1 cut(s) 266
EarI CTCTTC 1 cut(s) 266
EciI GGCGGA 1 cut(s) 207
Ecl136II GAGCTC 1 cut(s) 456
Eco24I GRGCYC 2 cut(s) 458, 489
Eco47I GGWCC 1 cut(s) 39
Eco53kI GAGCTC 1 cut(s) 456
Eco57I CTGAAG 2 cut(s) 693, 913
EcoICRI GAGCTC 1 cut(s) 456
EcoNI CCTNNNNNAGG 1 cut(s) 915
EcoRII CCWGG 3 cut(s) 406, 716, 916
EcoT38I GRGCYC 2 cut(s) 458, 489
FaeI CATG 2 cut(s) 512, 524
FatI CATG 2 cut(s) 508, 520
FauNDI CATATG 1 cut(s) 955
Fnu4HI GCNGC 4 cut(s) 167, 176, 305, 708
FokI GGATG 2 cut(s) 207, 983
FriOI GRGCYC 2 cut(s) 458, 489
Fsp4HI GCNGC 4 cut(s) 167, 176, 305, 708
FspBI CTAG 2 cut(s) 686, 992
GluI GCNGC 4 cut(s) 167, 176, 305, 708
GsuI CTGGAG 1 cut(s) 420
HaeIII GGCC 4 cut(s) 54, 507, 621, 710
HapII CCGG 3 cut(s) 19, 236, 528
Hin1II CATG 2 cut(s) 512, 524
HincII GTYRAC 1 cut(s) 516
HindII GTYRAC 1 cut(s) 516
HindIII AAGCTT 3 cut(s) 225, 675, 925
HinfI GANTC 4 cut(s) 336, 517, 524, 949
HpaII CCGG 3 cut(s) 19, 236, 528
HphI GGTGA 1 cut(s) 775
Hpy166II GTNNAC 3 cut(s) 516, 783, 847
Hpy188I TCNGA 5 cut(s) 293, 739, 754, 854, 932
Hpy188III TCNNGA 5 cut(s) 437, 521, 584, 887, 946
Hpy8I GTNNAC 3 cut(s) 516, 783, 847
HpyAV CCTTC 1 cut(s) 976
HpyCH4III ACNGT 1 cut(s) 332
HpyCH4V TGCA 4 cut(s) 60, 201, 555, 564
HpyF10VI GCNNNNNNNGC 5 cut(s) 158, 172, 175, 198, 561
HpyF3I CTNAG 3 cut(s) 32, 215, 490
Hsp92II CATG 2 cut(s) 512, 524
Kzo9I GATC 2 cut(s) 108, 720
LmnI GCTCC 4 cut(s) 21, 238, 484, 739
Lsp1109I GCAGC 2 cut(s) 153, 162
LweI GCATC 1 cut(s) 307
MaeI CTAG 2 cut(s) 686, 992
MaeIII GTNAC 3 cut(s) 139, 401, 415
MalI GATC 2 cut(s) 110, 722
MboI GATC 2 cut(s) 108, 720
MboII GAAGA 8 cut(s) 67, 112, 216, 238, 241, 253, 641, 889
MflI RGATCY 1 cut(s) 720
MhlI GDGCHC 3 cut(s) 458, 489, 695
MluCI AATT 4 cut(s) 48, 610, 645, 774
MlyI GAGTC 2 cut(s) 345, 511
MmeI TCCRAC 4 cut(s) 316, 462, 817, 919
MnlI CCTC 5 cut(s) 123, 356, 442, 534, 745
MseI TTAA 3 cut(s) 536, 644, 1006
MspA1I CMGCKG 1 cut(s) 299
MspI CCGG 3 cut(s) 19, 236, 528
MspR9I CCNGG 4 cut(s) 408, 529, 718, 918
MvaI CCWGG 3 cut(s) 408, 718, 918
MwoI GCNNNNNNNGC 5 cut(s) 158, 172, 175, 198, 561
NciI CCSGG 1 cut(s) 529
NdeI CATATG 1 cut(s) 955
NdeII GATC 2 cut(s) 108, 720
NlaIII CATG 2 cut(s) 512, 524
NlaIV GGNNCC 2 cut(s) 234, 486
NmeAIII GCCGAG 1 cut(s) 137
NmuCI GTSAC 1 cut(s) 401
PagI TCATGA 1 cut(s) 520
PaqCI CACCTGC 1 cut(s) 796
PcsI WCGNNNNNNNCGW 1 cut(s) 345
PfeI GAWTC 2 cut(s) 524, 949
PfoI TCCNGGA 1 cut(s) 716
PkrI GCNGC 4 cut(s) 168, 177, 306, 709
PleI GAGTC 2 cut(s) 344, 511
PpsI GAGTC 2 cut(s) 344, 511
Psp124BI GAGCTC 1 cut(s) 458
Psp6I CCWGG 3 cut(s) 406, 716, 916
PspGI CCWGG 3 cut(s) 406, 716, 916
PspN4I GGNNCC 2 cut(s) 234, 486
PspPI GGNCC 1 cut(s) 39
PsrI GAACNNNNNNTAC 2 cut(s) 875, 907
PsuI RGATCY 1 cut(s) 720
PvuII CAGCTG 1 cut(s) 299
RsaI GTAC 2 cut(s) 670, 972
RsaNI GTAC 2 cut(s) 669, 971
SacI GAGCTC 1 cut(s) 458
SaqAI TTAA 3 cut(s) 536, 644, 1006
SatI GCNGC 4 cut(s) 167, 176, 305, 708
Sau3AI GATC 2 cut(s) 108, 720
Sau96I GGNCC 1 cut(s) 39
SchI GAGTC 2 cut(s) 345, 511
ScrFI CCNGG 4 cut(s) 408, 529, 718, 918
SduI GDGCHC 3 cut(s) 458, 489, 695
SfaNI GCATC 1 cut(s) 307
SinI GGWCC 1 cut(s) 39
SmlI CTYRAG 1 cut(s) 465
SmoI CTYRAG 1 cut(s) 465
Sse9I AATT 4 cut(s) 48, 610, 645, 774
SsiI CCGC 4 cut(s) 126, 192, 305, 707
SspI AATATT 2 cut(s) 256, 937
SspMI CTAG 2 cut(s) 686, 992
SstI GAGCTC 1 cut(s) 458
StyD4I CCNGG 4 cut(s) 406, 527, 716, 916
TaaI ACNGT 1 cut(s) 332
TaqII GACCGA 1 cut(s) 27
TasI AATT 4 cut(s) 48, 610, 645, 774
TatI WGTACW 1 cut(s) 970
TauI GCSGC 2 cut(s) 307, 710
TfiI GAWTC 2 cut(s) 524, 949
Tru1I TTAA 3 cut(s) 536, 644, 1006
Tru9I TTAA 3 cut(s) 536, 644, 1006
TseFI GTSAC 1 cut(s) 401
TseI GCWGC 2 cut(s) 166, 175
Tsp45I GTSAC 1 cut(s) 401
TspDTI ATGAA 1 cut(s) 253
VpaK11BI GGWCC 1 cut(s) 39
XagI CCTNNNNNAGG 1 cut(s) 915
XspI CTAG 2 cut(s) 686, 992
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.