Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003628.1

Orthogroup ID

OG0014877

Physical Location & Seq

Genomic Coordinates Forward (+)

93848 .. 95252

Gene Structure 1405 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 657 bp

atgaaacagttgaccttcaaggacataaatggtctggttcagcagaatgcccagctcaggagtcttgttcgcaatctttctgaccagcttgaaaatagggaaaaggagttcaaggaaaattttgaaaaggagctcaagaagcatactgaggaagctgcttctagagttgaggctgtattacaaagagctgaagagcaagggcaaatgattgaatcccttcacacctctgtcgcaatgtacaaaaggttgtatgaagaggagcataaacttcgttcgtctggtccccatttaatagaggctgctccagaatatggcattgatataagcagagttagaggagtagtagacaactctaacagaattcttgaggtaaagaaggaatttgggtcatttcacaaatacatatgggggcttgtgaatcacaagccaatttcccctcaatacaagcaaggctacaaaatcccagtgaagacatcaaaatcagagagcataagcaaagacatggttaggagggggtttaggtttgtcggtccaacagttgttcattccttcatgcaagcctcaggcctcacaaatgaccatttgaccacctgccacaggcaccttcagtgcaccttactagcagcccatcctaccacattggaacaagctctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Adenine_glyco

Protein Analysis

218

Amino Acids

25.07

Weight (kDa)

9.13

Isoelectric Point (pI)

47.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR	PF25785	3 - 35	8.1e-10	Nucleoprotein TPR-like domain
Adenine_glyco	PF03352	109 - 201	4e-32	Methyladenine glycosylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0014877)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003628.1_g000036 Rmu_sc0003955.1_g000010 Rmu_sc0012314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010080 Rroxscaffold_2G00130840 Rroxscaffold_2G00133490 Rroxscaffold_3G00219720 Rroxscaffold_4G00297500 Rroxscaffold_4G00326750 Rroxscaffold_5G00354240
rosa_samantha	Rh2CG222400 Rh5CG174800 Rh5CG248300 Rh6DG091500
rosa_wichuraiana	Rw2G003120 Rw3G017480 Rw5G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	599
Acc36I	ACCTGC	1 cut(s)	599
AccB1I	GGYRCC	1 cut(s)	600
AccB7I	CCANNNNNTGG	1 cut(s)	311
AccI	GTMKAC	1 cut(s)	345
AcsI	RAATTY	3 cut(s)	118, 360, 380
AcuI	CTGAAG	2 cut(s)	210, 590
AfaI	GTAC	1 cut(s)	239
AfiI	CCNNNNNNNGG	3 cut(s)	57, 311, 597
AgsI	TTSAA	5 cut(s)	19, 92, 112, 125, 212
AloI	GAACNNNNNNTCC	2 cut(s)	92, 124
AluBI	AGCT	6 cut(s)	55, 88, 133, 155, 188, 650
AluI	AGCT	6 cut(s)	55, 88, 133, 155, 188, 650
Alw21I	GWGCWC	2 cut(s)	135, 614
Alw44I	GTGCAC	1 cut(s)	610
AoxI	GGCC	1 cut(s)	565
ApaLI	GTGCAC	1 cut(s)	610
ApeKI	GCWGC	3 cut(s)	155, 299, 623
ApoI	RAATTY	3 cut(s)	118, 360, 380
Asp700I	GAANNNNTTC	1 cut(s)	216
AspS9I	GGNCC	2 cut(s)	281, 530
AvaII	GGWCC	2 cut(s)	281, 530
AxyI	CCTNAGG	1 cut(s)	562
BaeGI	GKGCMC	1 cut(s)	614
BanI	GGYRCC	1 cut(s)	600
BanII	GRGCYC	1 cut(s)	135
BbsI	GAAGAC	1 cut(s)	476
Bbv12I	GWGCWC	2 cut(s)	135, 614
BbvI	GCAGC	3 cut(s)	142, 286, 635
BccI	CCATC	1 cut(s)	636
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BfaI	CTAG	2 cut(s)	162, 620
BfmI	CTRYAG	1 cut(s)	653
BfuAI	ACCTGC	1 cut(s)	599
BisI	GCNGC	3 cut(s)	156, 300, 624
BlsI	GCNGC	3 cut(s)	157, 301, 625
Bme18I	GGWCC	2 cut(s)	281, 530
BmgT120I	GGNCC	2 cut(s)	281, 530
BmiI	GGNNCC	2 cut(s)	283, 602
BmrI	ACTGGG	1 cut(s)	458
BmuI	ACTGGG	1 cut(s)	458
BpiI	GAAGAC	1 cut(s)	476
BpmI	CTGGAG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	56
BpuEI	CTTGAG	2 cut(s)	119, 386
Bsc4I	CCNNNNNNNGG	3 cut(s)	57, 311, 597
Bse1I	ACTGG	1 cut(s)	464
Bse21I	CCTNAGG	1 cut(s)	562
Bse3DI	GCAATG	1 cut(s)	240
BseGI	GGATG	1 cut(s)	628
BseLI	CCNNNNNNNGG	3 cut(s)	57, 311, 597
BseMI	GCAATG	1 cut(s)	240
BseMII	CTCAG	3 cut(s)	70, 138, 576
BseNI	ACTGG	1 cut(s)	464
BseRI	GAGGAG	2 cut(s)	272, 351
BseSI	GKGCMC	1 cut(s)	614
BseXI	GCAGC	3 cut(s)	142, 286, 635
BseYI	CCCAGC	1 cut(s)	51
BshFI	GGCC	1 cut(s)	567
BshNI	GGYRCC	1 cut(s)	600
BsiHKAI	GWGCWC	2 cut(s)	135, 614
BslFI	GGGAC	1 cut(s)	267
BslI	CCNNNNNNNGG	3 cut(s)	57, 311, 597
BsmFI	GGGAC	1 cut(s)	267
BsmI	GAATGC	1 cut(s)	52
BsnI	GGCC	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	135, 614
Bsp1407I	TGTACA	1 cut(s)	237
BspANI	GGCC	1 cut(s)	567
BspCNI	CTCAG	3 cut(s)	69, 139, 575
BspLI	GGNNCC	2 cut(s)	283, 602
BspMI	ACCTGC	1 cut(s)	599
BspQI	GCTCTTC	1 cut(s)	186
BspT107I	GGYRCC	1 cut(s)	600
BsrDI	GCAATG	1 cut(s)	240
BsrGI	TGTACA	1 cut(s)	237
BsrI	ACTGG	1 cut(s)	464
Bst4CI	ACNGT	2 cut(s)	9, 538
Bst6I	CTCTTC	2 cut(s)	186, 249
BstAUI	TGTACA	1 cut(s)	237
BstC8I	GCNNGC	1 cut(s)	558
BstDEI	CTNAG	3 cut(s)	56, 147, 562
BstENI	CCTNNNNNAGG	1 cut(s)	595
BstF5I	GGATG	1 cut(s)	628
BstMWI	GCNNNNNNNGC	1 cut(s)	139
BstSFI	CTRYAG	1 cut(s)	653
BstSLI	GKGCMC	1 cut(s)	614
BstV1I	GCAGC	3 cut(s)	142, 286, 635
BstV2I	GAAGAC	1 cut(s)	476
Bsu36I	CCTNAGG	1 cut(s)	562
BsuRI	GGCC	1 cut(s)	567
BtsCI	GGATG	1 cut(s)	628
BtsIMutI	CAGTG	2 cut(s)	471, 614
BveI	ACCTGC	1 cut(s)	599
Cac8I	GCNNGC	1 cut(s)	558
Cfr13I	GGNCC	2 cut(s)	281, 530
Csp6I	GTAC	1 cut(s)	238
CviAII	CATG	2 cut(s)	502, 553
CviQI	GTAC	1 cut(s)	238
DdeI	CTNAG	3 cut(s)	56, 147, 562
Eam1104I	CTCTTC	2 cut(s)	186, 249
EarI	CTCTTC	2 cut(s)	186, 249
Ecl136II	GAGCTC	1 cut(s)	133
Eco147I	AGGCCT	1 cut(s)	567
Eco24I	GRGCYC	1 cut(s)	135
Eco47I	GGWCC	2 cut(s)	281, 530
Eco53kI	GAGCTC	1 cut(s)	133
Eco57I	CTGAAG	2 cut(s)	210, 590
Eco81I	CCTNAGG	1 cut(s)	562
EcoICRI	GAGCTC	1 cut(s)	133
EcoNI	CCTNNNNNAGG	1 cut(s)	595
EcoRI	GAATTC	1 cut(s)	360
EcoT38I	GRGCYC	1 cut(s)	135
FaeI	CATG	2 cut(s)	505, 556
FaqI	GGGAC	1 cut(s)	267
FatI	CATG	2 cut(s)	501, 552
FauNDI	CATATG	1 cut(s)	404
FblI	GTMKAC	1 cut(s)	345
Fnu4HI	GCNGC	3 cut(s)	156, 300, 624
FokI	GGATG	1 cut(s)	615
FriOI	GRGCYC	1 cut(s)	135
Fsp4HI	GCNGC	3 cut(s)	156, 300, 624
FspBI	CTAG	2 cut(s)	162, 620
GluI	GCNGC	3 cut(s)	156, 300, 624
GsaI	CCCAGC	1 cut(s)	55
GsuI	CTGGAG	1 cut(s)	288
HaeIII	GGCC	1 cut(s)	567
Hin1II	CATG	2 cut(s)	505, 556
HincII	GTYRAC	1 cut(s)	12
HindII	GTYRAC	1 cut(s)	12
HinfI	GANTC	3 cut(s)	61, 212, 418
Hpy166II	GTNNAC	3 cut(s)	12, 346, 612
Hpy188I	TCNGA	2 cut(s)	82, 484
Hpy188III	TCNNGA	5 cut(s)	58, 136, 162, 305, 365
Hpy8I	GTNNAC	3 cut(s)	12, 346, 612
HpyAV	CCTTC	5 cut(s)	25, 227, 370, 559, 614
HpyCH4III	ACNGT	2 cut(s)	9, 538
HpyCH4V	TGCA	2 cut(s)	556, 612
HpyF10VI	GCNNNNNNNGC	1 cut(s)	139
HpyF3I	CTNAG	3 cut(s)	56, 147, 562
Hsp92II	CATG	2 cut(s)	505, 556
LguI	GCTCTTC	1 cut(s)	186
LmnI	GCTCC	3 cut(s)	130, 259, 307
Lsp1109I	GCAGC	3 cut(s)	142, 286, 635
MaeI	CTAG	2 cut(s)	162, 620
MboII	GAAGA	3 cut(s)	203, 266, 481
MhlI	GDGCHC	2 cut(s)	135, 614
MluCI	AATT	4 cut(s)	118, 360, 380, 429
MlyI	GAGTC	1 cut(s)	70
MmeI	TCCRAC	1 cut(s)	557
MroXI	GAANNNNTTC	1 cut(s)	216
MseI	TTAA	1 cut(s)	290
Mva1269I	GAATGC	1 cut(s)	52
MwoI	GCNNNNNNNGC	1 cut(s)	139
NdeI	CATATG	1 cut(s)	404
NlaIII	CATG	2 cut(s)	505, 556
NlaIV	GGNNCC	2 cut(s)	283, 602
PaqCI	CACCTGC	1 cut(s)	599
PceI	AGGCCT	1 cut(s)	567
PciSI	GCTCTTC	1 cut(s)	186
PctI	GAATGC	1 cut(s)	52
PdmI	GAANNNNTTC	1 cut(s)	216
PfeI	GAWTC	2 cut(s)	212, 418
PflMI	CCANNNNNTGG	1 cut(s)	311
PkrI	GCNGC	3 cut(s)	157, 301, 625
PleI	GAGTC	1 cut(s)	69
PpsI	GAGTC	1 cut(s)	69
Psp124BI	GAGCTC	1 cut(s)	135
PspFI	CCCAGC	1 cut(s)	51
PspN4I	GGNNCC	2 cut(s)	283, 602
PspPI	GGNCC	2 cut(s)	281, 530
RsaI	GTAC	1 cut(s)	239
RsaNI	GTAC	1 cut(s)	238
SacI	GAGCTC	1 cut(s)	135
SapI	GCTCTTC	1 cut(s)	186
SaqAI	TTAA	1 cut(s)	290
SatI	GCNGC	3 cut(s)	156, 300, 624
Sau96I	GGNCC	2 cut(s)	281, 530
SchI	GAGTC	1 cut(s)	70
SduI	GDGCHC	2 cut(s)	135, 614
SfcI	CTRYAG	1 cut(s)	653
SinI	GGWCC	2 cut(s)	281, 530
SmlI	CTYRAG	2 cut(s)	134, 365
SmoI	CTYRAG	2 cut(s)	134, 365
Sse9I	AATT	4 cut(s)	118, 360, 380, 429
SseBI	AGGCCT	1 cut(s)	567
SspMI	CTAG	2 cut(s)	162, 620
SstI	GAGCTC	1 cut(s)	135
StuI	AGGCCT	1 cut(s)	567
TaaI	ACNGT	2 cut(s)	9, 538
TaqII	GACCGA	1 cut(s)	518
TasI	AATT	4 cut(s)	118, 360, 380, 429
TatI	WGTACW	1 cut(s)	237
TfiI	GAWTC	2 cut(s)	212, 418
Tru1I	TTAA	1 cut(s)	290
Tru9I	TTAA	1 cut(s)	290
TscAI	CASTG	2 cut(s)	471, 614
TseI	GCWGC	3 cut(s)	155, 299, 623
TspDTI	ATGAA	4 cut(s)	17, 267, 533, 541
TspRI	CASTG	2 cut(s)	471, 614
Van91I	CCANNNNNTGG	1 cut(s)	311
VneI	GTGCAC	1 cut(s)	610
VpaK11BI	GGWCC	2 cut(s)	281, 530
XagI	CCTNNNNNAGG	1 cut(s)	595
XapI	RAATTY	3 cut(s)	118, 360, 380
XbaI	TCTAGA	1 cut(s)	161
XmiI	GTMKAC	1 cut(s)	345
XmnI	GAANNNNTTC	1 cut(s)	216
XspI	CTAG	2 cut(s)	162, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.