Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003955.1

Orthogroup ID

OG0014877

Physical Location & Seq

Genomic Coordinates Forward (+)

17761 .. 18987

Gene Structure 1227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003955.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 453 bp

atgattgaatcccttcacacctctgtcgcaatgtacaaaaggttgtatgaagaggagcataaacttcgttcgtctggtccccatttaatagaggctgctccagaatatggcattgatataagcagagttagaggagtagtagacaactctaacagaattcttgaggtaaagaaggaatttgggtcatttcacaaatacatatgggggcttgtgaatcacaagccaatttcccctcaatacaagcaaggctacaaaatcccagtgaagacatcaaaatcagagagcataagcaaagacatggttaggagggggtttaggtttgtcggtccaacagttgttcattccttcatgcaagcctcaggcctcacaaatgaccatttgaccacctgccacaggcaccttcagtgcaccttactagcagcccatcctaccacattggaacaagctctatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko03410 map03410

Pfam Domains

Protein Families

Adenine_glyco

Protein Analysis

150

Amino Acids

17.09

Weight (kDa)

9.42

Isoelectric Point (pI)

50.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014877)

Species	Orthologous Gene IDs
rosa_multiflora	Rmu_sc0003628.1_g000036 Rmu_sc0003955.1_g000010 Rmu_sc0012314.1_g000001
rosa_roxburghii	Rroxscaffold_1G00010080 Rroxscaffold_2G00130840 Rroxscaffold_2G00133490 Rroxscaffold_3G00219720 Rroxscaffold_4G00297500 Rroxscaffold_4G00326750 Rroxscaffold_5G00354240
rosa_samantha	Rh2CG222400 Rh5CG174800 Rh5CG248300 Rh6DG091500
rosa_wichuraiana	Rw2G003120 Rw3G017480 Rw5G025600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	395
Acc36I	ACCTGC	1 cut(s)	395
AccB1I	GGYRCC	1 cut(s)	396
AccB7I	CCANNNNNTGG	1 cut(s)	107
AccI	GTMKAC	1 cut(s)	141
AcsI	RAATTY	2 cut(s)	156, 176
AcuI	CTGAAG	1 cut(s)	386
AfaI	GTAC	1 cut(s)	35
AfiI	CCNNNNNNNGG	2 cut(s)	107, 393
AgsI	TTSAA	1 cut(s)	8
AluBI	AGCT	1 cut(s)	446
AluI	AGCT	1 cut(s)	446
Alw21I	GWGCWC	1 cut(s)	410
Alw44I	GTGCAC	1 cut(s)	406
AoxI	GGCC	1 cut(s)	361
ApaLI	GTGCAC	1 cut(s)	406
ApeKI	GCWGC	2 cut(s)	95, 419
ApoI	RAATTY	2 cut(s)	156, 176
Asp700I	GAANNNNTTC	1 cut(s)	12
AspS9I	GGNCC	2 cut(s)	77, 326
AvaII	GGWCC	2 cut(s)	77, 326
AxyI	CCTNAGG	1 cut(s)	358
BaeGI	GKGCMC	1 cut(s)	410
BanI	GGYRCC	1 cut(s)	396
BbsI	GAAGAC	1 cut(s)	272
Bbv12I	GWGCWC	1 cut(s)	410
BbvI	GCAGC	2 cut(s)	82, 431
BccI	CCATC	1 cut(s)	432
BcgI	CGANNNNNNTGC	2 cut(s)	47, 81
BfaI	CTAG	1 cut(s)	416
BfmI	CTRYAG	1 cut(s)	449
BfuAI	ACCTGC	1 cut(s)	395
BisI	GCNGC	2 cut(s)	96, 420
BlsI	GCNGC	2 cut(s)	97, 421
Bme18I	GGWCC	2 cut(s)	77, 326
BmgT120I	GGNCC	2 cut(s)	77, 326
BmiI	GGNNCC	2 cut(s)	79, 398
BmrI	ACTGGG	1 cut(s)	254
BmuI	ACTGGG	1 cut(s)	254
BpiI	GAAGAC	1 cut(s)	272
BpmI	CTGGAG	1 cut(s)	84
BpuEI	CTTGAG	1 cut(s)	182
Bsc4I	CCNNNNNNNGG	2 cut(s)	107, 393
Bse1I	ACTGG	1 cut(s)	260
Bse21I	CCTNAGG	1 cut(s)	358
Bse3DI	GCAATG	1 cut(s)	36
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	2 cut(s)	107, 393
BseMI	GCAATG	1 cut(s)	36
BseMII	CTCAG	1 cut(s)	372
BseNI	ACTGG	1 cut(s)	260
BseRI	GAGGAG	2 cut(s)	68, 147
BseSI	GKGCMC	1 cut(s)	410
BseXI	GCAGC	2 cut(s)	82, 431
BshFI	GGCC	1 cut(s)	363
BshNI	GGYRCC	1 cut(s)	396
BsiHKAI	GWGCWC	1 cut(s)	410
BslFI	GGGAC	1 cut(s)	63
BslI	CCNNNNNNNGG	2 cut(s)	107, 393
BsmFI	GGGAC	1 cut(s)	63
BsnI	GGCC	1 cut(s)	363
Bsp1286I	GDGCHC	1 cut(s)	410
Bsp1407I	TGTACA	1 cut(s)	33
BspANI	GGCC	1 cut(s)	363
BspCNI	CTCAG	1 cut(s)	371
BspLI	GGNNCC	2 cut(s)	79, 398
BspMI	ACCTGC	1 cut(s)	395
BspT107I	GGYRCC	1 cut(s)	396
BsrDI	GCAATG	1 cut(s)	36
BsrGI	TGTACA	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	260
Bst4CI	ACNGT	1 cut(s)	334
Bst6I	CTCTTC	1 cut(s)	45
BstAUI	TGTACA	1 cut(s)	33
BstC8I	GCNNGC	1 cut(s)	354
BstDEI	CTNAG	1 cut(s)	358
BstENI	CCTNNNNNAGG	1 cut(s)	391
BstF5I	GGATG	1 cut(s)	424
BstSFI	CTRYAG	1 cut(s)	449
BstSLI	GKGCMC	1 cut(s)	410
BstV1I	GCAGC	2 cut(s)	82, 431
BstV2I	GAAGAC	1 cut(s)	272
Bsu36I	CCTNAGG	1 cut(s)	358
BsuRI	GGCC	1 cut(s)	363
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	2 cut(s)	267, 410
BveI	ACCTGC	1 cut(s)	395
Cac8I	GCNNGC	1 cut(s)	354
Cfr13I	GGNCC	2 cut(s)	77, 326
Csp6I	GTAC	1 cut(s)	34
CviAII	CATG	2 cut(s)	298, 349
CviJI	RGCY	8 cut(s)	95, 208, 223, 249, 356, 363, 422, 446
CviKI_1	RGCY	8 cut(s)	95, 208, 223, 249, 356, 363, 422, 446
CviQI	GTAC	1 cut(s)	34
DdeI	CTNAG	1 cut(s)	358
Eam1104I	CTCTTC	1 cut(s)	45
EarI	CTCTTC	1 cut(s)	45
Eco147I	AGGCCT	1 cut(s)	363
Eco47I	GGWCC	2 cut(s)	77, 326
Eco57I	CTGAAG	1 cut(s)	386
Eco81I	CCTNAGG	1 cut(s)	358
EcoNI	CCTNNNNNAGG	1 cut(s)	391
EcoRI	GAATTC	1 cut(s)	156
FaeI	CATG	2 cut(s)	301, 352
FaqI	GGGAC	1 cut(s)	63
FatI	CATG	2 cut(s)	297, 348
FauNDI	CATATG	1 cut(s)	200
FblI	GTMKAC	1 cut(s)	141
Fnu4HI	GCNGC	2 cut(s)	96, 420
FokI	GGATG	1 cut(s)	411
Fsp4HI	GCNGC	2 cut(s)	96, 420
FspBI	CTAG	1 cut(s)	416
GluI	GCNGC	2 cut(s)	96, 420
GsuI	CTGGAG	1 cut(s)	84
HaeIII	GGCC	1 cut(s)	363
Hin1II	CATG	2 cut(s)	301, 352
HinfI	GANTC	2 cut(s)	8, 214
Hpy166II	GTNNAC	2 cut(s)	142, 408
Hpy188I	TCNGA	1 cut(s)	280
Hpy188III	TCNNGA	2 cut(s)	101, 161
Hpy8I	GTNNAC	2 cut(s)	142, 408
HpyAV	CCTTC	4 cut(s)	23, 166, 355, 410
HpyCH4III	ACNGT	1 cut(s)	334
HpyCH4V	TGCA	2 cut(s)	352, 408
HpyF3I	CTNAG	1 cut(s)	358
Hsp92II	CATG	2 cut(s)	301, 352
LmnI	GCTCC	2 cut(s)	55, 103
LpnPI	CCDG	6 cut(s)	60, 114, 273, 345, 379, 400
Lsp1109I	GCAGC	2 cut(s)	82, 431
MaeI	CTAG	1 cut(s)	416
MboII	GAAGA	2 cut(s)	62, 277
MhlI	GDGCHC	1 cut(s)	410
MluCI	AATT	3 cut(s)	156, 176, 225
MmeI	TCCRAC	1 cut(s)	353
MnlI	CCTC	9 cut(s)	31, 46, 85, 125, 157, 243, 300, 367, 374
MroXI	GAANNNNTTC	1 cut(s)	12
MseI	TTAA	1 cut(s)	86
NdeI	CATATG	1 cut(s)	200
NlaIII	CATG	2 cut(s)	301, 352
NlaIV	GGNNCC	2 cut(s)	79, 398
PaqCI	CACCTGC	1 cut(s)	395
PceI	AGGCCT	1 cut(s)	363
PdmI	GAANNNNTTC	1 cut(s)	12
PfeI	GAWTC	2 cut(s)	8, 214
PflMI	CCANNNNNTGG	1 cut(s)	107
PkrI	GCNGC	2 cut(s)	97, 421
PspN4I	GGNNCC	2 cut(s)	79, 398
PspPI	GGNCC	2 cut(s)	77, 326
RsaI	GTAC	1 cut(s)	35
RsaNI	GTAC	1 cut(s)	34
SaqAI	TTAA	1 cut(s)	86
SatI	GCNGC	2 cut(s)	96, 420
Sau96I	GGNCC	2 cut(s)	77, 326
SduI	GDGCHC	1 cut(s)	410
SetI	ASST	8 cut(s)	23, 44, 168, 320, 389, 402, 413, 448
SfcI	CTRYAG	1 cut(s)	449
SinI	GGWCC	2 cut(s)	77, 326
SmlI	CTYRAG	1 cut(s)	161
SmoI	CTYRAG	1 cut(s)	161
Sse9I	AATT	3 cut(s)	156, 176, 225
SseBI	AGGCCT	1 cut(s)	363
SspMI	CTAG	1 cut(s)	416
StuI	AGGCCT	1 cut(s)	363
TaaI	ACNGT	1 cut(s)	334
TaqII	GACCGA	1 cut(s)	314
TasI	AATT	3 cut(s)	156, 176, 225
TatI	WGTACW	1 cut(s)	33
TfiI	GAWTC	2 cut(s)	8, 214
Tru1I	TTAA	1 cut(s)	86
Tru9I	TTAA	1 cut(s)	86
TscAI	CASTG	2 cut(s)	267, 410
TseI	GCWGC	2 cut(s)	95, 419
TspDTI	ATGAA	3 cut(s)	63, 329, 337
TspRI	CASTG	2 cut(s)	267, 410
Van91I	CCANNNNNTGG	1 cut(s)	107
VneI	GTGCAC	1 cut(s)	406
VpaK11BI	GGWCC	2 cut(s)	77, 326
XagI	CCTNNNNNAGG	1 cut(s)	391
XapI	RAATTY	2 cut(s)	156, 176
XmiI	GTMKAC	1 cut(s)	141
XmnI	GAANNNNTTC	1 cut(s)	12
XspI	CTAG	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.