Rh5CG248300

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0014877
Physical Location & Seq
Reverse (-)
26095134 .. 26102206
7073 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG248300.1

Sequence Viewer

Length: 672 bp
ATGGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGGAATCTGATACTGAAAAAGTCATATCTGAACATCTTTTGACCTTCAAGGACATAAATGGTCTGGTTCAGCAGAATGCCCAGCTCAGGAGTCTTGTTCGCAATCTTTCTGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGAAAATTTTGAAAAGGAGCTCAAGAAGCATACTGAGGAAGCTGCTTCTAGAGTTGAGGCTGTATTACAAAGAGCTGAAGAGCAAGGGCAAATGATTGAATCCCTTCACACTTCTGCTATGTTGGCATTACGTGCTGCAAAGGATGAGATTAAGAATTTGAAAGATGAAATGCAGGCTACTAAAGATCACATGCTACAGTATAAGAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGCACATGAAAACTTCAAGATTGAGGCTGAAAAACTGAAGAAGTCTCGAGATGTTGAATTACTCTCTTTGAGAGAGAGGACTTACTCTTCACTTCTCCAAACTGGTGGTGCGATGCAAACTCTAATAAAAGGGAGGTTGCAGGGAGAGACAGCGGTAGCAGCTATGGGTTGCAGGGAGAGACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

223

Amino Acids

25.36

Weight (kDa)

5.87

Isoelectric Point (pI)

34.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR PF25785 2 - 76 2.4e-21 Nucleoprotein TPR-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 638
AcsI RAATTY 3 cut(s) 241, 391, 482
AcuI CTGAAG 2 cut(s) 333, 542
AfiI CCNNNNNNNGG 1 cut(s) 180
AloI GAACNNNNNNTCC 2 cut(s) 215, 247
AluBI AGCT 8 cut(s) 40, 178, 211, 256, 278, 311, 449, 647
AluI AGCT 8 cut(s) 40, 178, 211, 256, 278, 311, 449, 647
Alw21I GWGCWC 2 cut(s) 93, 258
Alw26I GTCTC 3 cut(s) 534, 626, 658
Alw44I GTGCAC 1 cut(s) 89
Ama87I CYCGRG 1 cut(s) 531
ApaLI GTGCAC 1 cut(s) 89
ApeKI GCWGC 3 cut(s) 278, 371, 644
ApoI RAATTY 3 cut(s) 241, 391, 482
Asp700I GAANNNNTTC 1 cut(s) 339
AvaI CYCGRG 1 cut(s) 531
BaeGI GKGCMC 1 cut(s) 93
BanII GRGCYC 1 cut(s) 258
Bbv12I GWGCWC 2 cut(s) 93, 258
BbvI GCAGC 3 cut(s) 265, 358, 656
BccI CCATC 1 cut(s) 472
BcoDI GTCTC 3 cut(s) 534, 626, 658
BfaI CTAG 1 cut(s) 285
BfmI CTRYAG 1 cut(s) 431
BisI GCNGC 3 cut(s) 279, 372, 645
BlsI GCNGC 3 cut(s) 280, 373, 646
BmeT110I CYCGRG 1 cut(s) 531
BmsI GCATC 3 cut(s) 59, 454, 588
BplI GAGNNNNNCTC 2 cut(s) 433, 465
Bpu10I CCTNAGC 2 cut(s) 179, 450
BpuEI CTTGAG 1 cut(s) 242
BsaAI YACGTR 1 cut(s) 368
BsaXI ACNNNNNCTCC 1 cut(s) 653
Bsc4I CCNNNNNNNGG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 592
BseGI GGATG 2 cut(s) 385, 469
BseLI CCNNNNNNNGG 1 cut(s) 180
BseMII CTCAG 3 cut(s) 193, 261, 464
BseNI ACTGG 1 cut(s) 592
BseSI GKGCMC 1 cut(s) 93
BseXI GCAGC 3 cut(s) 265, 358, 656
BseYI CCCAGC 1 cut(s) 174
BsiHKAI GWGCWC 2 cut(s) 93, 258
BsiHKCI CYCGRG 1 cut(s) 531
BslI CCNNNNNNNGG 1 cut(s) 180
BsmAI GTCTC 3 cut(s) 534, 626, 658
BsmI GAATGC 1 cut(s) 175
BsoBI CYCGRG 1 cut(s) 531
Bsp1286I GDGCHC 2 cut(s) 93, 258
Bsp143I GATC 1 cut(s) 421
BspACI CCGC 1 cut(s) 638
BspCNI CTCAG 3 cut(s) 192, 262, 463
BspHI TCATGA 1 cut(s) 61
BspQI GCTCTTC 1 cut(s) 309
BsrI ACTGG 1 cut(s) 592
BssMI GATC 1 cut(s) 421
Bst4CI ACNGT 2 cut(s) 435, 669
Bst6I CTCTTC 2 cut(s) 309, 577
BstAPI GCANNNNNTGC 1 cut(s) 368
BstBAI YACGTR 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 411
BstDEI CTNAG 3 cut(s) 179, 270, 450
BstF5I GGATG 2 cut(s) 385, 469
BstKTI GATC 1 cut(s) 424
BstMAI GTCTC 3 cut(s) 534, 626, 658
BstMBI GATC 1 cut(s) 421
BstMWI GCNNNNNNNGC 4 cut(s) 262, 359, 368, 644
BstNSI RCATGY 1 cut(s) 430
BstSFI CTRYAG 1 cut(s) 431
BstSLI GKGCMC 1 cut(s) 93
BstV1I GCAGC 3 cut(s) 265, 358, 656
BstXI CCANNNNNNTGG 1 cut(s) 590
BtgZI GCGATG 1 cut(s) 611
BtsCI GGATG 2 cut(s) 385, 469
Cac8I GCNNGC 1 cut(s) 411
CciI TCATGA 1 cut(s) 61
CviAII CATG 3 cut(s) 62, 427, 491
DdeI CTNAG 3 cut(s) 179, 270, 450
DpnI GATC 1 cut(s) 423
DpnII GATC 1 cut(s) 421
Eam1104I CTCTTC 2 cut(s) 309, 577
EarI CTCTTC 2 cut(s) 309, 577
Ecl136II GAGCTC 1 cut(s) 256
Eco24I GRGCYC 1 cut(s) 258
Eco53kI GAGCTC 1 cut(s) 256
Eco57I CTGAAG 2 cut(s) 333, 542
Eco88I CYCGRG 1 cut(s) 531
EcoICRI GAGCTC 1 cut(s) 256
EcoT22I ATGCAT 1 cut(s) 469
EcoT38I GRGCYC 1 cut(s) 258
FaeI CATG 3 cut(s) 65, 430, 494
FatI CATG 3 cut(s) 61, 426, 490
Fnu4HI GCNGC 3 cut(s) 279, 372, 645
FokI GGATG 2 cut(s) 392, 476
FriOI GRGCYC 1 cut(s) 258
Fsp4HI GCNGC 3 cut(s) 279, 372, 645
FspBI CTAG 1 cut(s) 285
GluI GCNGC 3 cut(s) 279, 372, 645
GsaI CCCAGC 1 cut(s) 178
Hin1II CATG 3 cut(s) 65, 430, 494
HinfI GANTC 3 cut(s) 98, 184, 335
Hpy166II GTNNAC 1 cut(s) 91
Hpy188I TCNGA 4 cut(s) 97, 103, 124, 205
Hpy188III TCNNGA 8 cut(s) 29, 62, 181, 259, 285, 502, 531, 533
Hpy8I GTNNAC 1 cut(s) 91
HpyAV CCTTC 2 cut(s) 148, 350
HpyCH4III ACNGT 2 cut(s) 435, 669
HpyCH4IV ACGT 1 cut(s) 367
HpyCH4V TGCA 9 cut(s) 50, 91, 374, 409, 467, 488, 601, 625, 657
HpyF10VI GCNNNNNNNGC 4 cut(s) 262, 359, 368, 644
HpyF3I CTNAG 3 cut(s) 179, 270, 450
HpySE526I ACGT 1 cut(s) 367
Hsp92II CATG 3 cut(s) 65, 430, 494
Kzo9I GATC 1 cut(s) 421
LguI GCTCTTC 1 cut(s) 309
LmnI GCTCC 1 cut(s) 253
LpnPI CCDG 9 cut(s) 143, 166, 188, 221, 395, 437, 573, 611, 643
Lsp1109I GCAGC 3 cut(s) 265, 358, 656
LweI GCATC 3 cut(s) 59, 454, 588
MaeI CTAG 1 cut(s) 285
MaeII ACGT 1 cut(s) 367
MalI GATC 1 cut(s) 423
MboI GATC 1 cut(s) 421
MboII GAAGA 4 cut(s) 45, 326, 535, 564
MhlI GDGCHC 2 cut(s) 93, 258
MluCI AATT 4 cut(s) 241, 391, 482, 542
MlyI GAGTC 1 cut(s) 193
MnlI CCTC 6 cut(s) 265, 286, 454, 502, 555, 612
Mph1103I ATGCAT 1 cut(s) 469
MroXI GAANNNNTTC 1 cut(s) 339
MseI TTAA 1 cut(s) 387
MspA1I CMGCKG 1 cut(s) 638
Mva1269I GAATGC 1 cut(s) 175
MwoI GCNNNNNNNGC 4 cut(s) 262, 359, 368, 644
NdeII GATC 1 cut(s) 421
NlaIII CATG 3 cut(s) 65, 430, 494
NsiI ATGCAT 1 cut(s) 469
NspI RCATGY 1 cut(s) 430
PaeR7I CTCGAG 1 cut(s) 531
PagI TCATGA 1 cut(s) 61
PciSI GCTCTTC 1 cut(s) 309
PctI GAATGC 1 cut(s) 175
PdmI GAANNNNTTC 1 cut(s) 339
PfeI GAWTC 2 cut(s) 98, 335
PkrI GCNGC 3 cut(s) 280, 373, 646
PleI GAGTC 1 cut(s) 192
PpsI GAGTC 1 cut(s) 192
Ppu21I YACGTR 1 cut(s) 368
Psp124BI GAGCTC 1 cut(s) 258
PspFI CCCAGC 1 cut(s) 174
SacI GAGCTC 1 cut(s) 258
SapI GCTCTTC 1 cut(s) 309
SaqAI TTAA 1 cut(s) 387
SatI GCNGC 3 cut(s) 279, 372, 645
Sau3AI GATC 1 cut(s) 421
SchI GAGTC 1 cut(s) 193
SduI GDGCHC 2 cut(s) 93, 258
SfaNI GCATC 3 cut(s) 59, 454, 588
SfcI CTRYAG 1 cut(s) 431
Sfr274I CTCGAG 1 cut(s) 531
SlaI CTCGAG 1 cut(s) 531
SmlI CTYRAG 2 cut(s) 257, 531
SmoI CTYRAG 2 cut(s) 257, 531
Sse9I AATT 4 cut(s) 241, 391, 482, 542
SsiI CCGC 1 cut(s) 638
SspMI CTAG 1 cut(s) 285
SstI GAGCTC 1 cut(s) 258
TaaI ACNGT 2 cut(s) 435, 669
TaiI ACGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 28, 532
TasI AATT 4 cut(s) 241, 391, 482, 542
TfiI GAWTC 2 cut(s) 98, 335
Tru1I TTAA 1 cut(s) 387
Tru9I TTAA 1 cut(s) 387
TseI GCWGC 3 cut(s) 278, 371, 644
TspDTI ATGAA 2 cut(s) 417, 507
VneI GTGCAC 1 cut(s) 89
XapI RAATTY 3 cut(s) 241, 391, 482
XbaI TCTAGA 1 cut(s) 284
XceI RCATGY 1 cut(s) 430
XhoI CTCGAG 1 cut(s) 531
XmnI GAANNNNTTC 1 cut(s) 339
XspI CTAG 1 cut(s) 285
Zsp2I ATGCAT 1 cut(s) 469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.