Rroxscaffold_2G00130840

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014877
Physical Location & Seq
Forward (+)
67335714 .. 67339132
3419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130840.1

Sequence Viewer

Length: 567 bp
ATGTACTCAAGAAAATGTACTCGATTTGGATGTGGTTTGTGGGAATGTGTTGATTGTGAGTCATGCGCAGAATTTGATTCAGTCGGTGTTGATGGGTTGAGGGTTGGGATGGGGTACGGCTCCATTTGTACTACTCAAGATTTGGAAAGGAGAGAATGTGAAAATGATGCAAAGACTCTTGTGAACTTTTACAAGGTGGCAGTCCTTTTGAAAGAATGTCAAGATATACAGCTTCGTGGTGCATATTCGGGTCATGATAGTTATGACAATGCTGTTGTAGTGCACTCGGAATCGATGCTGAAAAAGTCATATCTGAACATCTTTGGTATTTTGGATTTTAAAATGAAACAGTTGACCTTCAAGGACATAAATGGTCCGGTTCAGCAGAATGCCCAGCTCGGGAGTCTTGTTCGCAATCTTTCGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGTTGTATAAAAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGCACATGAAAACTTCAAGATTGAGATACTGCTGCCTTACTTTAATTTTAGCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

188

Amino Acids

21.33

Weight (kDa)

6.31

Isoelectric Point (pI)

48.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR PF25785 65 - 144 3.5e-07 Nucleoprotein TPR-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 67
AcsI RAATTY 2 cut(s) 71, 506
AfaI GTAC 4 cut(s) 5, 19, 116, 130
AfiI CCNNNNNNNGG 1 cut(s) 399
AgsI TTSAA 6 cut(s) 211, 361, 433, 453, 496, 526
AloI GAACNNNNNNTCC 2 cut(s) 433, 465
AluBI AGCT 4 cut(s) 232, 397, 429, 473
AluI AGCT 4 cut(s) 232, 397, 429, 473
Alw21I GWGCWC 1 cut(s) 285
Alw44I GTGCAC 1 cut(s) 281
Ama87I CYCGRG 1 cut(s) 398
ApaLI GTGCAC 1 cut(s) 281
ApeKI GCWGC 1 cut(s) 541
ApoI RAATTY 2 cut(s) 71, 506
AspLEI GCGC 1 cut(s) 68
AspS9I GGNCC 1 cut(s) 374
AvaI CYCGRG 1 cut(s) 398
AvaII GGWCC 1 cut(s) 374
BaeGI GKGCMC 1 cut(s) 285
Bbv12I GWGCWC 1 cut(s) 285
BbvI GCAGC 1 cut(s) 528
BccI CCATC 3 cut(s) 86, 103, 496
BceAI ACGGC 1 cut(s) 133
BisI GCNGC 1 cut(s) 542
BlsI GCNGC 1 cut(s) 543
Bme18I GGWCC 1 cut(s) 374
BmeT110I CYCGRG 1 cut(s) 398
BmgT120I GGNCC 1 cut(s) 374
BmiI GGNNCC 1 cut(s) 121
BmsI GCATC 3 cut(s) 157, 285, 478
Bpu10I CCTNAGC 1 cut(s) 474
BpuEI CTTGAG 1 cut(s) 120
Bsa29I ATCGAT 1 cut(s) 293
BsaWI WCCGGW 1 cut(s) 376
BsaXI ACNNNNNCTCC 2 cut(s) 142, 172
Bsc4I CCNNNNNNNGG 1 cut(s) 399
BseCI ATCGAT 1 cut(s) 293
BseGI GGATG 3 cut(s) 35, 114, 493
BseLI CCNNNNNNNGG 1 cut(s) 399
BseMII CTCAG 1 cut(s) 488
BseSI GKGCMC 1 cut(s) 285
BseXI GCAGC 1 cut(s) 528
BseYI CCCAGC 1 cut(s) 393
BshVI ATCGAT 1 cut(s) 293
BsiHKAI GWGCWC 1 cut(s) 285
BsiHKCI CYCGRG 1 cut(s) 398
BsiSI CCGG 1 cut(s) 377
BslI CCNNNNNNNGG 1 cut(s) 399
BsmI GAATGC 1 cut(s) 394
BsoBI CYCGRG 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 285
BspCNI CTCAG 1 cut(s) 487
BspDI ATCGAT 1 cut(s) 293
BspHI TCATGA 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 121
Bst4CI ACNGT 1 cut(s) 351
BstDEI CTNAG 1 cut(s) 474
BstF5I GGATG 3 cut(s) 35, 114, 493
BstHHI GCGC 1 cut(s) 68
BstSLI GKGCMC 1 cut(s) 285
BstV1I GCAGC 1 cut(s) 528
Bsu15I ATCGAT 1 cut(s) 293
BsuTUI ATCGAT 1 cut(s) 293
BtsCI GGATG 3 cut(s) 35, 114, 493
CciI TCATGA 1 cut(s) 253
CfoI GCGC 1 cut(s) 68
Cfr13I GGNCC 1 cut(s) 374
ClaI ATCGAT 1 cut(s) 293
Csp6I GTAC 4 cut(s) 4, 18, 115, 129
CviAII CATG 3 cut(s) 63, 254, 515
CviJI RGCY 5 cut(s) 120, 232, 397, 429, 473
CviKI_1 RGCY 5 cut(s) 120, 232, 397, 429, 473
CviQI GTAC 4 cut(s) 4, 18, 115, 129
DdeI CTNAG 1 cut(s) 474
DraI TTTAAA 1 cut(s) 340
Eco47I GGWCC 1 cut(s) 374
Eco88I CYCGRG 1 cut(s) 398
EcoT22I ATGCAT 1 cut(s) 493
FaeI CATG 3 cut(s) 66, 257, 518
FatI CATG 3 cut(s) 62, 253, 514
Fnu4HI GCNGC 1 cut(s) 542
FokI GGATG 3 cut(s) 42, 121, 500
Fsp4HI GCNGC 1 cut(s) 542
FspI TGCGCA 1 cut(s) 67
GlaI GCGC 1 cut(s) 67
GluI GCNGC 1 cut(s) 542
GsaI CCCAGC 1 cut(s) 397
HapII CCGG 1 cut(s) 377
HhaI GCGC 1 cut(s) 68
Hin1II CATG 3 cut(s) 66, 257, 518
Hin6I GCGC 1 cut(s) 66
HinP1I GCGC 1 cut(s) 66
HincII GTYRAC 1 cut(s) 354
HindII GTYRAC 1 cut(s) 354
HinfI GANTC 5 cut(s) 59, 77, 175, 290, 403
HpaII CCGG 1 cut(s) 377
Hpy166II GTNNAC 3 cut(s) 184, 283, 354
Hpy188I TCNGA 2 cut(s) 289, 315
Hpy188III TCNNGA 6 cut(s) 9, 137, 221, 254, 400, 526
Hpy8I GTNNAC 3 cut(s) 184, 283, 354
HpyAV CCTTC 1 cut(s) 367
HpyCH4III ACNGT 1 cut(s) 351
HpyCH4V TGCA 5 cut(s) 170, 242, 283, 491, 512
HpyF3I CTNAG 1 cut(s) 474
Hsp92II CATG 3 cut(s) 66, 257, 518
HspAI GCGC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 125
LpnPI CCDG 4 cut(s) 390, 407, 439, 461
Lsp1109I GCAGC 1 cut(s) 528
LweI GCATC 3 cut(s) 157, 285, 478
MhlI GDGCHC 1 cut(s) 285
MluCI AATT 3 cut(s) 71, 506, 553
MlyI GAGTC 3 cut(s) 68, 169, 412
MnlI CCTC 2 cut(s) 93, 478
Mph1103I ATGCAT 1 cut(s) 493
MseI TTAA 2 cut(s) 339, 552
MspI CCGG 1 cut(s) 377
Mva1269I GAATGC 1 cut(s) 394
NlaIII CATG 3 cut(s) 66, 257, 518
NlaIV GGNNCC 1 cut(s) 121
NsbI TGCGCA 1 cut(s) 67
NsiI ATGCAT 1 cut(s) 493
PagI TCATGA 1 cut(s) 253
PctI GAATGC 1 cut(s) 394
PfeI GAWTC 2 cut(s) 77, 290
PkrI GCNGC 1 cut(s) 543
PleI GAGTC 3 cut(s) 67, 169, 411
PpsI GAGTC 3 cut(s) 67, 169, 411
PspFI CCCAGC 1 cut(s) 393
PspN4I GGNNCC 1 cut(s) 121
PspPI GGNCC 1 cut(s) 374
RsaI GTAC 4 cut(s) 5, 19, 116, 130
RsaNI GTAC 4 cut(s) 4, 18, 115, 129
SaqAI TTAA 2 cut(s) 339, 552
SatI GCNGC 1 cut(s) 542
Sau96I GGNCC 1 cut(s) 374
SchI GAGTC 3 cut(s) 68, 169, 412
SduI GDGCHC 1 cut(s) 285
SetI ASST 8 cut(s) 198, 234, 359, 399, 431, 458, 475, 480
SfaNI GCATC 3 cut(s) 157, 285, 478
SinI GGWCC 1 cut(s) 374
SmlI CTYRAG 2 cut(s) 7, 135
SmoI CTYRAG 2 cut(s) 7, 135
Sse9I AATT 3 cut(s) 71, 506, 553
TaaI ACNGT 1 cut(s) 351
TaqI TCGA 3 cut(s) 22, 293, 422
TasI AATT 3 cut(s) 71, 506, 553
TatI WGTACW 3 cut(s) 3, 17, 128
TfiI GAWTC 2 cut(s) 77, 290
Tru1I TTAA 2 cut(s) 339, 552
Tru9I TTAA 2 cut(s) 339, 552
TseI GCWGC 1 cut(s) 541
TspDTI ATGAA 2 cut(s) 359, 531
VneI GTGCAC 1 cut(s) 281
VpaK11BI GGWCC 1 cut(s) 374
XapI RAATTY 2 cut(s) 71, 506
Zsp2I ATGCAT 1 cut(s) 493
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.