Rmu_sc0012314.1_g000001

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012314.1
OG0014877
Physical Location & Seq
Reverse (-)
1 .. 1061
1061 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012314.1_g000001.1.cds

Sequence Viewer

Length: 188 bp
atgaaacagttgaccttcaaggacataaatggtctggttcagcagaatgcccagctcaggagtcttgttcgcaatctttctgaccagcttgaaaatagggaaaaggagttcaaggaaaattttgaaaaggagctcaagaagcatactgaggaagctgcttctagagttgaggctgtattacaaaggct
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

63

Amino Acids

7.47

Weight (kDa)

8.09

Isoelectric Point (pI)

34.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 118
AfiI CCNNNNNNNGG 1 cut(s) 57
AgsI TTSAA 4 cut(s) 19, 92, 112, 125
AloI GAACNNNNNNTCC 2 cut(s) 92, 124
AluBI AGCT 4 cut(s) 55, 88, 133, 155
AluI AGCT 4 cut(s) 55, 88, 133, 155
Alw21I GWGCWC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 155
ApoI RAATTY 1 cut(s) 118
BanII GRGCYC 1 cut(s) 135
Bbv12I GWGCWC 1 cut(s) 135
BbvI GCAGC 1 cut(s) 142
BfaI CTAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 156
BlsI GCNGC 1 cut(s) 157
Bpu10I CCTNAGC 1 cut(s) 56
BpuEI CTTGAG 1 cut(s) 119
Bsc4I CCNNNNNNNGG 1 cut(s) 57
BseLI CCNNNNNNNGG 1 cut(s) 57
BseMII CTCAG 2 cut(s) 70, 138
BseXI GCAGC 1 cut(s) 142
BseYI CCCAGC 1 cut(s) 51
BsiHKAI GWGCWC 1 cut(s) 135
BslI CCNNNNNNNGG 1 cut(s) 57
BsmI GAATGC 1 cut(s) 52
Bsp1286I GDGCHC 1 cut(s) 135
BspCNI CTCAG 2 cut(s) 69, 139
Bst4CI ACNGT 1 cut(s) 9
BstDEI CTNAG 2 cut(s) 56, 147
BstMWI GCNNNNNNNGC 1 cut(s) 139
BstV1I GCAGC 1 cut(s) 142
CviJI RGCY 6 cut(s) 55, 88, 133, 155, 173, 187
CviKI_1 RGCY 6 cut(s) 55, 88, 133, 155, 173, 187
DdeI CTNAG 2 cut(s) 56, 147
Ecl136II GAGCTC 1 cut(s) 133
Eco24I GRGCYC 1 cut(s) 135
Eco53kI GAGCTC 1 cut(s) 133
EcoICRI GAGCTC 1 cut(s) 133
EcoT38I GRGCYC 1 cut(s) 135
FaiI YATR 2 cut(s) 26, 144
Fnu4HI GCNGC 1 cut(s) 156
FriOI GRGCYC 1 cut(s) 135
Fsp4HI GCNGC 1 cut(s) 156
FspBI CTAG 1 cut(s) 162
GluI GCNGC 1 cut(s) 156
GsaI CCCAGC 1 cut(s) 55
HincII GTYRAC 1 cut(s) 12
HindII GTYRAC 1 cut(s) 12
HinfI GANTC 1 cut(s) 61
Hpy166II GTNNAC 1 cut(s) 12
Hpy188I TCNGA 1 cut(s) 82
Hpy188III TCNNGA 3 cut(s) 58, 136, 162
Hpy8I GTNNAC 1 cut(s) 12
HpyAV CCTTC 1 cut(s) 25
HpyCH4III ACNGT 1 cut(s) 9
HpyF10VI GCNNNNNNNGC 1 cut(s) 139
HpyF3I CTNAG 2 cut(s) 56, 147
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 20, 43, 65, 98
Lsp1109I GCAGC 1 cut(s) 142
MaeI CTAG 1 cut(s) 162
MhlI GDGCHC 1 cut(s) 135
MluCI AATT 1 cut(s) 118
MlyI GAGTC 1 cut(s) 70
MnlI CCTC 2 cut(s) 142, 163
Mva1269I GAATGC 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 139
PctI GAATGC 1 cut(s) 52
PkrI GCNGC 1 cut(s) 157
PleI GAGTC 1 cut(s) 69
PpsI GAGTC 1 cut(s) 69
Psp124BI GAGCTC 1 cut(s) 135
PspFI CCCAGC 1 cut(s) 51
SacI GAGCTC 1 cut(s) 135
SatI GCNGC 1 cut(s) 156
SchI GAGTC 1 cut(s) 70
SduI GDGCHC 1 cut(s) 135
SetI ASST 5 cut(s) 17, 57, 90, 135, 157
SmlI CTYRAG 1 cut(s) 134
SmoI CTYRAG 1 cut(s) 134
Sse9I AATT 1 cut(s) 118
SspMI CTAG 1 cut(s) 162
SstI GAGCTC 1 cut(s) 135
TaaI ACNGT 1 cut(s) 9
TasI AATT 1 cut(s) 118
TseI GCWGC 1 cut(s) 155
TspDTI ATGAA 1 cut(s) 17
XapI RAATTY 1 cut(s) 118
XbaI TCTAGA 1 cut(s) 161
XspI CTAG 1 cut(s) 162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.