Rroxscaffold_1G00010080

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0014877
Physical Location & Seq
Reverse (-)
12578023 .. 12581580
3558 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00010080.1

Sequence Viewer

Length: 810 bp
ATGAACACGATGCGGTACACGGAGGTCGGCGCAGAATTTGATTCAGGTGGTGTTGATGGGTTGAGGGTTGGGATGGGGTACGGCTCCATTTGTACTACTCAAGAGGTTTGCGTCGGCGGCGGGGGACAGTTGGAAAGGAGAGAATGTGAAAATGATGCAAAGACTCTTGTGAACTTTTACAAGGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGAAATCGATGCTGAAAAAGTCATATACGAACATCTTTGGTATTTTGGATTTTAAAATGAAACAGTTGACCTTCAAGAACATAAATGGTCTGGTTCAGCGAGAATGCCCAGCTCGGGAGTCTTGTTCGCAATCTTTCGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGAAAATTTTGAAAGGGAGCTCAAGAAGCATACCGAGGAAGCTGCTTCTAGAGTTGAGGCTGTATTACAAAGAGCTGAAGAGCAAGGGCAAATGATTGAATCCCTTCACACCTCTGCTATGTTGGCATTACGTGCTGCAAAGGATGAGATTAAGAATTTGAAAGATGAAATGCAGGCTACTAAAGATCACATGCTACAGTATAAGAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGCACATGAAAACTTCAAGATTGAGGCTGAAAAACTGAAGAAGTCTCGAGATGCTGAATTACTCTCTTTGAGAGAGAGGGTCTCTGAACTTGAAAATTTTTGTTTTTGGCTTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

269

Amino Acids

30.67

Weight (kDa)

5.68

Isoelectric Point (pI)

40.71

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 13, 117, 120
AcsI RAATTY 5 cut(s) 35, 448, 598, 689, 787
AcuI CTGAAG 2 cut(s) 540, 749
AfaI GTAC 3 cut(s) 17, 80, 94
AfiI CCNNNNNNNGG 1 cut(s) 388
AloI GAACNNNNNNTCC 2 cut(s) 422, 454
AluBI AGCT 7 cut(s) 220, 386, 418, 463, 485, 518, 656
AluI AGCT 7 cut(s) 220, 386, 418, 463, 485, 518, 656
Alw21I GWGCWC 2 cut(s) 273, 465
Alw26I GTCTC 2 cut(s) 741, 778
Alw44I GTGCAC 1 cut(s) 269
Ama87I CYCGRG 2 cut(s) 387, 738
ApaLI GTGCAC 1 cut(s) 269
ApeKI GCWGC 2 cut(s) 485, 578
ApoI RAATTY 5 cut(s) 35, 448, 598, 689, 787
Asp700I GAANNNNTTC 1 cut(s) 546
AspLEI GCGC 1 cut(s) 32
AvaI CYCGRG 2 cut(s) 387, 738
BaeGI GKGCMC 1 cut(s) 273
BanII GRGCYC 1 cut(s) 465
Bbv12I GWGCWC 2 cut(s) 273, 465
BbvI GCAGC 2 cut(s) 472, 565
BccI CCATC 3 cut(s) 50, 67, 679
BceAI ACGGC 1 cut(s) 97
BcgI CGANNNNNNTGC 4 cut(s) 265, 299, 467, 501
BcoDI GTCTC 2 cut(s) 741, 778
BfaI CTAG 1 cut(s) 492
BfmI CTRYAG 1 cut(s) 638
BisI GCNGC 3 cut(s) 118, 486, 579
BlsI GCNGC 3 cut(s) 119, 487, 580
BmeT110I CYCGRG 2 cut(s) 387, 738
BmiI GGNNCC 1 cut(s) 85
BmsI GCATC 5 cut(s) 145, 239, 273, 661, 733
BplI GAGNNNNNCTC 4 cut(s) 640, 672, 758, 790
Bpu10I CCTNAGC 1 cut(s) 657
BpuEI CTTGAG 2 cut(s) 84, 449
Bsa29I ATCGAT 1 cut(s) 281
BsaAI YACGTR 1 cut(s) 575
BsaI GGTCTC 1 cut(s) 778
BsaJI CCNNGG 1 cut(s) 477
BsaXI ACNNNNNCTCC 2 cut(s) 130, 160
Bsc4I CCNNNNNNNGG 1 cut(s) 388
BseCI ATCGAT 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 477
BseGI GGATG 3 cut(s) 78, 592, 676
BseLI CCNNNNNNNGG 1 cut(s) 388
BseMII CTCAG 1 cut(s) 671
BseSI GKGCMC 1 cut(s) 273
BseXI GCAGC 2 cut(s) 472, 565
BseYI CCCAGC 1 cut(s) 382
BshVI ATCGAT 1 cut(s) 281
BsiHKAI GWGCWC 2 cut(s) 273, 465
BsiHKCI CYCGRG 2 cut(s) 387, 738
BslFI GGGAC 1 cut(s) 138
BslI CCNNNNNNNGG 1 cut(s) 388
BsmAI GTCTC 2 cut(s) 741, 778
BsmFI GGGAC 1 cut(s) 138
BsmI GAATGC 1 cut(s) 383
Bso31I GGTCTC 1 cut(s) 778
BsoBI CYCGRG 2 cut(s) 387, 738
Bsp1286I GDGCHC 2 cut(s) 273, 465
Bsp143I GATC 1 cut(s) 628
BspACI CCGC 3 cut(s) 13, 117, 120
BspCNI CTCAG 1 cut(s) 670
BspDI ATCGAT 1 cut(s) 281
BspHI TCATGA 1 cut(s) 241
BspLI GGNNCC 1 cut(s) 85
BspQI GCTCTTC 1 cut(s) 516
BspTNI GGTCTC 1 cut(s) 778
BssECI CCNNGG 1 cut(s) 477
BssMI GATC 1 cut(s) 628
Bst4CI ACNGT 3 cut(s) 129, 339, 642
Bst6I CTCTTC 1 cut(s) 516
BstAPI GCANNNNNTGC 1 cut(s) 575
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 618, 804
BstDEI CTNAG 1 cut(s) 657
BstF5I GGATG 3 cut(s) 78, 592, 676
BstHHI GCGC 1 cut(s) 32
BstKTI GATC 1 cut(s) 631
BstMAI GTCTC 2 cut(s) 741, 778
BstMBI GATC 1 cut(s) 628
BstMWI GCNNNNNNNGC 4 cut(s) 117, 469, 566, 575
BstNSI RCATGY 1 cut(s) 637
BstSFI CTRYAG 1 cut(s) 638
BstSLI GKGCMC 1 cut(s) 273
BstV1I GCAGC 2 cut(s) 472, 565
Bsu15I ATCGAT 1 cut(s) 281
BsuTUI ATCGAT 1 cut(s) 281
BtsCI GGATG 3 cut(s) 78, 592, 676
Cac8I GCNNGC 2 cut(s) 618, 804
CciI TCATGA 1 cut(s) 241
CfoI GCGC 1 cut(s) 32
ClaI ATCGAT 1 cut(s) 281
CseI GACGC 1 cut(s) 100
Csp6I GTAC 3 cut(s) 16, 79, 93
CviAII CATG 3 cut(s) 242, 634, 698
CviQI GTAC 3 cut(s) 16, 79, 93
DdeI CTNAG 1 cut(s) 657
DpnI GATC 1 cut(s) 630
DpnII GATC 1 cut(s) 628
DraI TTTAAA 1 cut(s) 328
Eam1104I CTCTTC 1 cut(s) 516
EarI CTCTTC 1 cut(s) 516
Ecl136II GAGCTC 1 cut(s) 463
Eco24I GRGCYC 1 cut(s) 465
Eco31I GGTCTC 1 cut(s) 778
Eco53kI GAGCTC 1 cut(s) 463
Eco57I CTGAAG 2 cut(s) 540, 749
Eco88I CYCGRG 2 cut(s) 387, 738
EcoICRI GAGCTC 1 cut(s) 463
EcoT22I ATGCAT 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 465
FaeI CATG 3 cut(s) 245, 637, 701
FaqI GGGAC 1 cut(s) 138
FatI CATG 3 cut(s) 241, 633, 697
FauI CCCGC 1 cut(s) 113
Fnu4HI GCNGC 3 cut(s) 118, 486, 579
FokI GGATG 3 cut(s) 85, 599, 683
FriOI GRGCYC 1 cut(s) 465
Fsp4HI GCNGC 3 cut(s) 118, 486, 579
FspBI CTAG 1 cut(s) 492
GlaI GCGC 1 cut(s) 31
GluI GCNGC 3 cut(s) 118, 486, 579
GsaI CCCAGC 1 cut(s) 386
HgaI GACGC 1 cut(s) 100
HhaI GCGC 1 cut(s) 32
Hin1II CATG 3 cut(s) 245, 637, 701
Hin6I GCGC 1 cut(s) 30
HinP1I GCGC 1 cut(s) 30
HincII GTYRAC 1 cut(s) 342
HindII GTYRAC 1 cut(s) 342
HinfI GANTC 4 cut(s) 41, 163, 392, 542
Hpy166II GTNNAC 4 cut(s) 18, 172, 271, 342
Hpy188I TCNGA 1 cut(s) 778
Hpy8I GTNNAC 4 cut(s) 18, 172, 271, 342
Hpy99I CGWCG 1 cut(s) 116
HpyAV CCTTC 2 cut(s) 355, 557
HpyCH4III ACNGT 3 cut(s) 129, 339, 642
HpyCH4IV ACGT 1 cut(s) 574
HpyCH4V TGCA 8 cut(s) 158, 230, 271, 581, 616, 674, 695, 806
HpyF10VI GCNNNNNNNGC 4 cut(s) 117, 469, 566, 575
HpyF3I CTNAG 1 cut(s) 657
HpySE526I ACGT 1 cut(s) 574
Hsp92II CATG 3 cut(s) 245, 637, 701
HspAI GCGC 1 cut(s) 30
Kzo9I GATC 1 cut(s) 628
LguI GCTCTTC 1 cut(s) 516
LmnI GCTCC 2 cut(s) 89, 460
LpnPI CCDG 6 cut(s) 30, 350, 396, 428, 602, 644
Lsp1109I GCAGC 2 cut(s) 472, 565
LweI GCATC 5 cut(s) 145, 239, 273, 661, 733
MaeI CTAG 1 cut(s) 492
MaeII ACGT 1 cut(s) 574
MalI GATC 1 cut(s) 630
MboI GATC 1 cut(s) 628
MboII GAAGA 3 cut(s) 225, 533, 742
MhlI GDGCHC 2 cut(s) 273, 465
MluCI AATT 6 cut(s) 35, 448, 598, 689, 749, 787
MlyI GAGTC 2 cut(s) 157, 401
MmeI TCCRAC 1 cut(s) 111
MnlI CCTC 9 cut(s) 16, 57, 97, 472, 493, 565, 661, 709, 762
Mph1103I ATGCAT 1 cut(s) 676
MroXI GAANNNNTTC 1 cut(s) 546
MseI TTAA 2 cut(s) 327, 594
Mva1269I GAATGC 1 cut(s) 383
MwoI GCNNNNNNNGC 4 cut(s) 117, 469, 566, 575
NdeII GATC 1 cut(s) 628
NlaIII CATG 3 cut(s) 245, 637, 701
NlaIV GGNNCC 1 cut(s) 85
NsiI ATGCAT 1 cut(s) 676
NspI RCATGY 1 cut(s) 637
PaeR7I CTCGAG 1 cut(s) 738
PagI TCATGA 1 cut(s) 241
PciSI GCTCTTC 1 cut(s) 516
PctI GAATGC 1 cut(s) 383
PdmI GAANNNNTTC 1 cut(s) 546
PfeI GAWTC 2 cut(s) 41, 542
PkrI GCNGC 3 cut(s) 119, 487, 580
PleI GAGTC 2 cut(s) 157, 400
PpsI GAGTC 2 cut(s) 157, 400
Ppu21I YACGTR 1 cut(s) 575
Psp124BI GAGCTC 1 cut(s) 465
PspFI CCCAGC 1 cut(s) 382
PspN4I GGNNCC 1 cut(s) 85
RsaI GTAC 3 cut(s) 17, 80, 94
RsaNI GTAC 3 cut(s) 16, 79, 93
SacI GAGCTC 1 cut(s) 465
SapI GCTCTTC 1 cut(s) 516
SaqAI TTAA 2 cut(s) 327, 594
SatI GCNGC 3 cut(s) 118, 486, 579
Sau3AI GATC 1 cut(s) 628
SchI GAGTC 2 cut(s) 157, 401
SduI GDGCHC 2 cut(s) 273, 465
SfaNI GCATC 5 cut(s) 145, 239, 273, 661, 733
SfcI CTRYAG 1 cut(s) 638
Sfr274I CTCGAG 1 cut(s) 738
SlaI CTCGAG 1 cut(s) 738
SmlI CTYRAG 3 cut(s) 99, 464, 738
SmoI CTYRAG 3 cut(s) 99, 464, 738
Sse9I AATT 6 cut(s) 35, 448, 598, 689, 749, 787
SsiI CCGC 3 cut(s) 13, 117, 120
SspMI CTAG 1 cut(s) 492
SstI GAGCTC 1 cut(s) 465
TaaI ACNGT 3 cut(s) 129, 339, 642
TaiI ACGT 1 cut(s) 577
TaqI TCGA 5 cut(s) 208, 275, 281, 411, 739
TasI AATT 6 cut(s) 35, 448, 598, 689, 749, 787
TatI WGTACW 1 cut(s) 92
TauI GCSGC 1 cut(s) 120
TfiI GAWTC 2 cut(s) 41, 542
Tru1I TTAA 2 cut(s) 327, 594
Tru9I TTAA 2 cut(s) 327, 594
TseI GCWGC 2 cut(s) 485, 578
TspDTI ATGAA 4 cut(s) 17, 347, 624, 714
TspGWI ACGGA 1 cut(s) 35
VneI GTGCAC 1 cut(s) 269
XapI RAATTY 5 cut(s) 35, 448, 598, 689, 787
XbaI TCTAGA 1 cut(s) 491
XceI RCATGY 1 cut(s) 637
XhoI CTCGAG 1 cut(s) 738
XmnI GAANNNNTTC 1 cut(s) 546
XspI CTAG 1 cut(s) 492
Zsp2I ATGCAT 1 cut(s) 676
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.