Rh2CG222400

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0014877
Physical Location & Seq
Reverse (-)
22358661 .. 22385225
26565 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG222400.1

Sequence Viewer

Length: 1038 bp
ATGTCGTCGTCGATTGGTAAGCATGACAATGTTGAGAATTCTATTGATAGCTACCGCAAAGCCTTTGATGTTGTTGACGTGATGGTATATAATGGTACATGTTGTTGGCTCTCTTTTCCAATATTTCCGGCTGGGAATCGGCCTGTCTACAAGGCAAATGGTATGGTAGCATACTTTGTCACATGGACAGATTACTTGCTTGACAGTTTCTTCTGGAAATCAGACATTATAAGATCTGGGACAATACAGAGTATGGGTTGTATTGAGAGGCTCTTGGACAATACAGATTGTGTATTGAGAGGCTTTGAGGAAATGCTGGGCTTTATTTGGATTGGTGATGCTTTGAAGAAGCTATGTAATGGTGGGATAGTGAAGCGTGAGGAATTATGGGTCACTTCCAAACTCTGGTGTACTCATCATGAACCAGAAGATGTACCAAAGGCATTTGATAAAACTTTGCCAGATTTGCAACTTGACTATCTGGATCTTTATCTTGTGGCAGTCCTTTTAAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGGAATCTGATACTGAAAAAGTCATATCTGAACATCTTTTGACCTTCAAGGACATAAATGGTCTGGTTCAGCAGAATGCCCAGCTCAGGAGTCTTGTTTGCAATCTTTCTGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGAAAATTTTGAAAAGGAGCTCAAGAAGCATACTGAGGAAGCTGCTTCTAGAGTTGAGGCTGTATTACAAAGAGCTGAAGAGCAAGGGCAAATGATTGAATCCCTTCACACCTCTGCTATGTTGGCATTACGTGCTGCAAAGGATGAGATTAAGAATTTGAAAGATGAAATGCAGGCTACTAAAGATCACATGCTACAGTATAAGAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGCACATGAAAACTTCAAGATTGAGGAGGAAGAGAAAGTAGAAGAAGTACCTAAAAACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

345

Amino Acids

39.57

Weight (kDa)

4.97

Isoelectric Point (pI)

40.65

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aldo_ket_red PF00248 110 - 167 3.7e-06 Aldo/keto reductase family
TPR PF25785 166 - 240 1e-19 Nucleoprotein TPR-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 230
AccB7I CCANNNNNTGG 1 cut(s) 405
AccI GTMKAC 1 cut(s) 147
AciI CCGC 1 cut(s) 55
AclWI GGATC 1 cut(s) 492
AcsI RAATTY 4 cut(s) 37, 733, 883, 974
AcuI CTGAAG 1 cut(s) 825
AfaI GTAC 4 cut(s) 97, 412, 435, 1026
AfiI CCNNNNNNNGG 2 cut(s) 405, 672
AflIII ACRYGT 1 cut(s) 98
AgsI TTSAA 9 cut(s) 346, 634, 707, 727, 740, 827, 889, 964, 994
AjiI CACGTC 1 cut(s) 79
AloI GAACNNNNNNTCC 2 cut(s) 707, 739
AluBI AGCT 9 cut(s) 51, 352, 532, 670, 703, 748, 770, 803, 941
AluI AGCT 9 cut(s) 51, 352, 532, 670, 703, 748, 770, 803, 941
Alw21I GWGCWC 2 cut(s) 585, 750
Alw44I GTGCAC 1 cut(s) 581
AlwI GGATC 1 cut(s) 492
AoxI GGCC 1 cut(s) 140
ApaLI GTGCAC 1 cut(s) 581
ApeKI GCWGC 2 cut(s) 770, 863
ApoI RAATTY 4 cut(s) 37, 733, 883, 974
Asp700I GAANNNNTTC 1 cut(s) 831
AsuHPI GGTGA 1 cut(s) 347
BaeGI GKGCMC 1 cut(s) 585
BanII GRGCYC 1 cut(s) 750
Bbv12I GWGCWC 2 cut(s) 585, 750
BbvI GCAGC 2 cut(s) 757, 850
BccI CCATC 2 cut(s) 76, 964
BfaI CTAG 1 cut(s) 777
BfmI CTRYAG 1 cut(s) 923
BglII AGATCT 1 cut(s) 233
BisI GCNGC 2 cut(s) 771, 864
BlsI GCNGC 2 cut(s) 772, 865
BmgBI CACGTC 1 cut(s) 79
BmsI GCATC 3 cut(s) 328, 551, 946
BplI GAGNNNNNCTC 2 cut(s) 925, 957
Bpu10I CCTNAGC 2 cut(s) 671, 942
BpuEI CTTGAG 1 cut(s) 734
BsaAI YACGTR 1 cut(s) 860
BsaBI GATNNNNATC 1 cut(s) 489
Bsc4I CCNNNNNNNGG 2 cut(s) 405, 672
Bse8I GATNNNNATC 1 cut(s) 489
BseGI GGATG 2 cut(s) 877, 961
BseJI GATNNNNATC 1 cut(s) 489
BseLI CCNNNNNNNGG 2 cut(s) 405, 672
BseMII CTCAG 3 cut(s) 685, 753, 956
BseRI GAGGAG 1 cut(s) 1016
BseSI GKGCMC 1 cut(s) 585
BseXI GCAGC 2 cut(s) 757, 850
BseYI CCCAGC 3 cut(s) 131, 316, 666
BshFI GGCC 1 cut(s) 142
BsiHKAI GWGCWC 2 cut(s) 585, 750
BsiSI CCGG 1 cut(s) 128
BslFI GGGAC 1 cut(s) 253
BslI CCNNNNNNNGG 2 cut(s) 405, 672
BsmFI GGGAC 1 cut(s) 253
BsmI GAATGC 1 cut(s) 667
BsnI GGCC 1 cut(s) 142
Bsp1286I GDGCHC 2 cut(s) 585, 750
Bsp143I GATC 3 cut(s) 233, 484, 913
BspACI CCGC 1 cut(s) 55
BspANI GGCC 1 cut(s) 142
BspCNI CTCAG 3 cut(s) 684, 754, 955
BspHI TCATGA 2 cut(s) 418, 553
BspPI GGATC 1 cut(s) 492
BspQI GCTCTTC 1 cut(s) 801
BssMI GATC 3 cut(s) 233, 484, 913
Bst4CI ACNGT 2 cut(s) 206, 927
Bst6I CTCTTC 2 cut(s) 801, 1002
BstAPI GCANNNNNTGC 1 cut(s) 860
BstBAI YACGTR 1 cut(s) 860
BstC8I GCNNGC 1 cut(s) 903
BstDEI CTNAG 3 cut(s) 671, 762, 942
BstF5I GGATG 2 cut(s) 877, 961
BstKTI GATC 3 cut(s) 236, 487, 916
BstMBI GATC 3 cut(s) 233, 484, 913
BstMWI GCNNNNNNNGC 4 cut(s) 466, 754, 851, 860
BstNSI RCATGY 2 cut(s) 102, 922
BstSFI CTRYAG 1 cut(s) 923
BstSLI GKGCMC 1 cut(s) 585
BstV1I GCAGC 2 cut(s) 757, 850
BstX2I RGATCY 2 cut(s) 233, 484
BstYI RGATCY 2 cut(s) 233, 484
BsuRI GGCC 1 cut(s) 142
BtrI CACGTC 1 cut(s) 79
BtsCI GGATG 2 cut(s) 877, 961
Cac8I GCNNGC 1 cut(s) 903
CciI TCATGA 2 cut(s) 418, 553
Csp6I GTAC 4 cut(s) 96, 411, 434, 1025
CviAII CATG 7 cut(s) 23, 99, 183, 419, 554, 919, 983
CviQI GTAC 4 cut(s) 96, 411, 434, 1025
DdeI CTNAG 3 cut(s) 671, 762, 942
DpnI GATC 3 cut(s) 235, 486, 915
DpnII GATC 3 cut(s) 233, 484, 913
DraI TTTAAA 1 cut(s) 510
Eam1104I CTCTTC 2 cut(s) 801, 1002
EarI CTCTTC 2 cut(s) 801, 1002
Ecl136II GAGCTC 1 cut(s) 748
Eco24I GRGCYC 1 cut(s) 750
Eco53kI GAGCTC 1 cut(s) 748
Eco57I CTGAAG 1 cut(s) 825
EcoICRI GAGCTC 1 cut(s) 748
EcoRI GAATTC 1 cut(s) 37
EcoT22I ATGCAT 1 cut(s) 961
EcoT38I GRGCYC 1 cut(s) 750
FaeI CATG 7 cut(s) 26, 102, 186, 422, 557, 922, 986
FaqI GGGAC 1 cut(s) 253
FatI CATG 7 cut(s) 22, 98, 182, 418, 553, 918, 982
FblI GTMKAC 1 cut(s) 147
Fnu4HI GCNGC 2 cut(s) 771, 864
FokI GGATG 2 cut(s) 884, 968
FriOI GRGCYC 1 cut(s) 750
Fsp4HI GCNGC 2 cut(s) 771, 864
FspBI CTAG 1 cut(s) 777
GluI GCNGC 2 cut(s) 771, 864
GsaI CCCAGC 3 cut(s) 135, 320, 670
HaeIII GGCC 1 cut(s) 142
HapII CCGG 1 cut(s) 128
Hin1II CATG 7 cut(s) 26, 102, 186, 422, 557, 922, 986
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 4 cut(s) 136, 590, 676, 827
HpaII CCGG 1 cut(s) 128
HphI GGTGA 1 cut(s) 347
Hpy166II GTNNAC 4 cut(s) 76, 148, 411, 583
Hpy188I TCNGA 5 cut(s) 223, 589, 595, 616, 697
Hpy188III TCNNGA 9 cut(s) 214, 419, 482, 521, 554, 673, 751, 777, 994
Hpy8I GTNNAC 4 cut(s) 76, 148, 411, 583
Hpy99I CGWCG 2 cut(s) 10, 13
HpyAV CCTTC 2 cut(s) 640, 842
HpyCH4III ACNGT 2 cut(s) 206, 927
HpyCH4IV ACGT 2 cut(s) 78, 859
HpyCH4V TGCA 8 cut(s) 469, 542, 583, 687, 866, 901, 959, 980
HpyF10VI GCNNNNNNNGC 4 cut(s) 466, 754, 851, 860
HpyF3I CTNAG 3 cut(s) 671, 762, 942
HpySE526I ACGT 2 cut(s) 78, 859
Hsp92II CATG 7 cut(s) 26, 102, 186, 422, 557, 922, 986
Kzo9I GATC 3 cut(s) 233, 484, 913
LguI GCTCTTC 1 cut(s) 801
LmnI GCTCC 1 cut(s) 745
Lsp1109I GCAGC 2 cut(s) 757, 850
LweI GCATC 3 cut(s) 328, 551, 946
MaeI CTAG 1 cut(s) 777
MaeII ACGT 2 cut(s) 78, 859
MaeIII GTNAC 2 cut(s) 178, 391
MalI GATC 3 cut(s) 235, 486, 915
MboI GATC 3 cut(s) 233, 484, 913
MboII GAAGA 7 cut(s) 202, 358, 440, 537, 818, 1019, 1031
MflI RGATCY 2 cut(s) 233, 484
MhlI GDGCHC 2 cut(s) 585, 750
MluCI AATT 5 cut(s) 37, 383, 733, 883, 974
MlyI GAGTC 1 cut(s) 685
Mph1103I ATGCAT 1 cut(s) 961
MroXI GAANNNNTTC 1 cut(s) 831
MseI TTAA 2 cut(s) 509, 879
MslI CAYNNNNRTG 1 cut(s) 27
MspI CCGG 1 cut(s) 128
Mva1269I GAATGC 1 cut(s) 667
MwoI GCNNNNNNNGC 4 cut(s) 466, 754, 851, 860
NdeII GATC 3 cut(s) 233, 484, 913
NlaIII CATG 7 cut(s) 26, 102, 186, 422, 557, 922, 986
NmuCI GTSAC 2 cut(s) 178, 391
NsiI ATGCAT 1 cut(s) 961
NspI RCATGY 2 cut(s) 102, 922
PagI TCATGA 2 cut(s) 418, 553
PciI ACATGT 1 cut(s) 98
PciSI GCTCTTC 1 cut(s) 801
PctI GAATGC 1 cut(s) 667
PdmI GAANNNNTTC 1 cut(s) 831
PfeI GAWTC 3 cut(s) 136, 590, 827
PflMI CCANNNNNTGG 1 cut(s) 405
PkrI GCNGC 2 cut(s) 772, 865
PleI GAGTC 1 cut(s) 684
PpsI GAGTC 1 cut(s) 684
Ppu21I YACGTR 1 cut(s) 860
PscI ACATGT 1 cut(s) 98
PsiI TTATAA 1 cut(s) 230
Psp124BI GAGCTC 1 cut(s) 750
PspFI CCCAGC 3 cut(s) 131, 316, 666
PsuI RGATCY 2 cut(s) 233, 484
RsaI GTAC 4 cut(s) 97, 412, 435, 1026
RsaNI GTAC 4 cut(s) 96, 411, 434, 1025
RseI CAYNNNNRTG 1 cut(s) 27
SacI GAGCTC 1 cut(s) 750
SapI GCTCTTC 1 cut(s) 801
SaqAI TTAA 2 cut(s) 509, 879
SatI GCNGC 2 cut(s) 771, 864
Sau3AI GATC 3 cut(s) 233, 484, 913
SchI GAGTC 1 cut(s) 685
SduI GDGCHC 2 cut(s) 585, 750
SfaNI GCATC 3 cut(s) 328, 551, 946
SfcI CTRYAG 1 cut(s) 923
SmiMI CAYNNNNRTG 1 cut(s) 27
SmlI CTYRAG 1 cut(s) 749
SmoI CTYRAG 1 cut(s) 749
Sse9I AATT 5 cut(s) 37, 383, 733, 883, 974
SsiI CCGC 1 cut(s) 55
SspI AATATT 1 cut(s) 123
SspMI CTAG 1 cut(s) 777
SstI GAGCTC 1 cut(s) 750
TaaI ACNGT 2 cut(s) 206, 927
TaiI ACGT 2 cut(s) 81, 862
TaqI TCGA 2 cut(s) 11, 520
TasI AATT 5 cut(s) 37, 383, 733, 883, 974
TatI WGTACW 1 cut(s) 410
TfiI GAWTC 3 cut(s) 136, 590, 827
Tru1I TTAA 2 cut(s) 509, 879
Tru9I TTAA 2 cut(s) 509, 879
TseFI GTSAC 2 cut(s) 178, 391
TseI GCWGC 2 cut(s) 770, 863
Tsp45I GTSAC 2 cut(s) 178, 391
TspDTI ATGAA 3 cut(s) 435, 909, 999
Van91I CCANNNNNTGG 1 cut(s) 405
VneI GTGCAC 1 cut(s) 581
XapI RAATTY 4 cut(s) 37, 733, 883, 974
XbaI TCTAGA 1 cut(s) 776
XceI RCATGY 2 cut(s) 102, 922
XmiI GTMKAC 1 cut(s) 147
XmnI GAANNNNTTC 1 cut(s) 831
XspI CTAG 1 cut(s) 777
Zsp2I ATGCAT 1 cut(s) 961
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.