Rw2G003120

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0014877
Physical Location & Seq
Reverse (-)
2995143 .. 3001725
6583 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G003120.1

Sequence Viewer

Length: 558 bp
ATGGCGGCCCACGCCACCACATCCCTTTTTGAACTTTTGCGGCGGAGGAGAGGAGCGGTACGTGCTACGGCGTATGGGTTTCAGGGTCGAGTGGAAGTGAGGAGATGGGATCGAGTAGATTTTCTTGAGTTGGTTCAGGGATTTGCATTTGTGGCAGAGGAGAACCAGATATTGGAAAGGAGAGAATGTGAAAATGATGCAAAGACTCTTGTGAACTTTTACAAGGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGAAATCTGATACTGAAAAAGTCATATCTGAACATCTTTTGACCTTCAAGGACATAAATGGTCTGGTTCAGCAGAATGCCCAGCTCAGGAGTCTTGTTCGCAATCTTTCTGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGAAAATTTTGAAAAGGAGCTCAAGAAGCATACTGAGGAAGCTGCTTCTAGAGTTGAGGCTTATAAGAGTATAGCTCAGCGACTGATTAGTCAAATCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

185

Amino Acids

21.37

Weight (kDa)

7.8

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR PF25785 75 - 150 3.3e-21 Nucleoprotein TPR-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 522
AasI GACNNNNNNGTC 1 cut(s) 546
AccB7I CCANNNNNTGG 1 cut(s) 172
AccBSI CCGCTC 1 cut(s) 56
AciI CCGC 4 cut(s) 5, 40, 43, 56
AclWI GGATC 1 cut(s) 117
AcsI RAATTY 1 cut(s) 463
AfaI GTAC 1 cut(s) 60
AfiI CCNNNNNNNGG 2 cut(s) 172, 402
AgsI TTSAA 6 cut(s) 32, 241, 364, 437, 457, 470
AjuI GAANNNNNNNTTGG 2 cut(s) 155, 187
AloI GAACNNNNNNTCC 2 cut(s) 437, 469
AluBI AGCT 6 cut(s) 262, 400, 433, 478, 500, 533
AluI AGCT 6 cut(s) 262, 400, 433, 478, 500, 533
Alw21I GWGCWC 2 cut(s) 315, 480
Alw44I GTGCAC 1 cut(s) 311
AlwI GGATC 1 cut(s) 117
AlwNI CAGNNNCTG 1 cut(s) 541
AoxI GGCC 1 cut(s) 6
ApaLI GTGCAC 1 cut(s) 311
ApeKI GCWGC 1 cut(s) 500
ApoI RAATTY 1 cut(s) 463
AspS9I GGNCC 1 cut(s) 7
BaeGI GKGCMC 1 cut(s) 315
BanII GRGCYC 1 cut(s) 480
Bbv12I GWGCWC 2 cut(s) 315, 480
BbvI GCAGC 1 cut(s) 487
BccI CCATC 1 cut(s) 99
BceAI ACGGC 1 cut(s) 84
BfaI CTAG 2 cut(s) 507, 556
BisI GCNGC 3 cut(s) 6, 41, 501
BlpI GCTNAGC 1 cut(s) 534
BlsI GCNGC 3 cut(s) 7, 42, 502
BmgT120I GGNCC 1 cut(s) 7
BmsI GCATC 2 cut(s) 187, 281
BplI GAGNNNNNCTC 2 cut(s) 517, 549
Bpu10I CCTNAGC 1 cut(s) 401
Bpu1102I GCTNAGC 1 cut(s) 534
BpuEI CTTGAG 2 cut(s) 146, 464
BsaAI YACGTR 1 cut(s) 62
BsaXI ACNNNNNCTCC 2 cut(s) 172, 202
Bsc4I CCNNNNNNNGG 2 cut(s) 172, 402
BseGI GGATG 1 cut(s) 20
BseLI CCNNNNNNNGG 2 cut(s) 172, 402
BseMII CTCAG 3 cut(s) 415, 483, 548
BseRI GAGGAG 4 cut(s) 61, 66, 115, 173
BseSI GKGCMC 1 cut(s) 315
BseXI GCAGC 1 cut(s) 487
BseYI CCCAGC 1 cut(s) 396
BshFI GGCC 1 cut(s) 8
BsiHKAI GWGCWC 2 cut(s) 315, 480
BslI CCNNNNNNNGG 2 cut(s) 172, 402
BsmI GAATGC 1 cut(s) 397
BsnI GGCC 1 cut(s) 8
Bsp1286I GDGCHC 2 cut(s) 315, 480
Bsp143I GATC 1 cut(s) 109
Bsp1720I GCTNAGC 1 cut(s) 534
BspACI CCGC 4 cut(s) 5, 40, 43, 56
BspANI GGCC 1 cut(s) 8
BspCNI CTCAG 3 cut(s) 414, 484, 547
BspHI TCATGA 1 cut(s) 283
BspPI GGATC 1 cut(s) 117
BsrBI CCGCTC 1 cut(s) 56
BssMI GATC 1 cut(s) 109
BstBAI YACGTR 1 cut(s) 62
BstDEI CTNAG 3 cut(s) 401, 492, 534
BstF5I GGATG 1 cut(s) 20
BstKTI GATC 1 cut(s) 112
BstMBI GATC 1 cut(s) 109
BstMWI GCNNNNNNNGC 4 cut(s) 11, 62, 152, 484
BstSLI GKGCMC 1 cut(s) 315
BstV1I GCAGC 1 cut(s) 487
BsuRI GGCC 1 cut(s) 8
BtsCI GGATG 1 cut(s) 20
CaiI CAGNNNCTG 1 cut(s) 541
CciI TCATGA 1 cut(s) 283
Cfr13I GGNCC 1 cut(s) 7
Csp6I GTAC 1 cut(s) 59
CviAII CATG 1 cut(s) 284
CviJI RGCY 8 cut(s) 8, 262, 400, 433, 478, 500, 518, 533
CviKI_1 RGCY 8 cut(s) 8, 262, 400, 433, 478, 500, 518, 533
CviQI GTAC 1 cut(s) 59
DdeI CTNAG 3 cut(s) 401, 492, 534
DpnI GATC 1 cut(s) 111
DpnII GATC 1 cut(s) 109
DrdI GACNNNNNNGTC 1 cut(s) 546
DseDI GACNNNNNNGTC 1 cut(s) 546
EciI GGCGGA 1 cut(s) 58
Ecl136II GAGCTC 1 cut(s) 478
Eco24I GRGCYC 1 cut(s) 480
Eco53kI GAGCTC 1 cut(s) 478
EcoICRI GAGCTC 1 cut(s) 478
EcoT38I GRGCYC 1 cut(s) 480
FaeI CATG 1 cut(s) 287
FaiI YATR 9 cut(s) 75, 257, 285, 294, 341, 371, 489, 522, 530
FatI CATG 1 cut(s) 283
Fnu4HI GCNGC 3 cut(s) 6, 41, 501
FokI GGATG 1 cut(s) 7
FriOI GRGCYC 1 cut(s) 480
Fsp4HI GCNGC 3 cut(s) 6, 41, 501
FspBI CTAG 2 cut(s) 507, 556
GluI GCNGC 3 cut(s) 6, 41, 501
GsaI CCCAGC 1 cut(s) 400
HaeIII GGCC 1 cut(s) 8
Hin1II CATG 1 cut(s) 287
HinfI GANTC 2 cut(s) 205, 406
Hpy166II GTNNAC 2 cut(s) 214, 313
Hpy188I TCNGA 3 cut(s) 325, 346, 427
Hpy188III TCNNGA 6 cut(s) 125, 251, 284, 403, 481, 507
Hpy8I GTNNAC 2 cut(s) 214, 313
HpyAV CCTTC 1 cut(s) 370
HpyCH4IV ACGT 1 cut(s) 61
HpyCH4V TGCA 4 cut(s) 146, 200, 272, 313
HpyF10VI GCNNNNNNNGC 4 cut(s) 11, 62, 152, 484
HpyF3I CTNAG 3 cut(s) 401, 492, 534
HpySE526I ACGT 1 cut(s) 61
Hsp92II CATG 1 cut(s) 287
Kzo9I GATC 1 cut(s) 109
LmnI GCTCC 2 cut(s) 53, 475
LpnPI CCDG 7 cut(s) 68, 122, 179, 365, 388, 410, 443
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 2 cut(s) 187, 281
MaeI CTAG 2 cut(s) 507, 556
MaeII ACGT 1 cut(s) 61
MalI GATC 1 cut(s) 111
MbiI CCGCTC 1 cut(s) 56
MboI GATC 1 cut(s) 109
MboII GAAGA 1 cut(s) 267
MhlI GDGCHC 2 cut(s) 315, 480
MluCI AATT 1 cut(s) 463
MlyI GAGTC 2 cut(s) 199, 415
MnlI CCTC 6 cut(s) 39, 44, 93, 151, 487, 508
Mva1269I GAATGC 1 cut(s) 397
MwoI GCNNNNNNNGC 4 cut(s) 11, 62, 152, 484
NdeII GATC 1 cut(s) 109
NlaIII CATG 1 cut(s) 287
PagI TCATGA 1 cut(s) 283
PctI GAATGC 1 cut(s) 397
PflMI CCANNNNNTGG 1 cut(s) 172
PkrI GCNGC 3 cut(s) 7, 42, 502
PleI GAGTC 2 cut(s) 199, 414
PpsI GAGTC 2 cut(s) 199, 414
Ppu21I YACGTR 1 cut(s) 62
PsiI TTATAA 1 cut(s) 522
Psp124BI GAGCTC 1 cut(s) 480
PspFI CCCAGC 1 cut(s) 396
PspPI GGNCC 1 cut(s) 7
PstNI CAGNNNCTG 1 cut(s) 541
RsaI GTAC 1 cut(s) 60
RsaNI GTAC 1 cut(s) 59
SacI GAGCTC 1 cut(s) 480
SatI GCNGC 3 cut(s) 6, 41, 501
Sau3AI GATC 1 cut(s) 109
Sau96I GGNCC 1 cut(s) 7
SchI GAGTC 2 cut(s) 199, 415
SduI GDGCHC 2 cut(s) 315, 480
SetI ASST 9 cut(s) 64, 228, 264, 362, 402, 435, 480, 502, 535
SfaNI GCATC 2 cut(s) 187, 281
SmlI CTYRAG 2 cut(s) 125, 479
SmoI CTYRAG 2 cut(s) 125, 479
Sse9I AATT 1 cut(s) 463
SsiI CCGC 4 cut(s) 5, 40, 43, 56
SspMI CTAG 2 cut(s) 507, 556
SstI GAGCTC 1 cut(s) 480
TaiI ACGT 1 cut(s) 64
TaqI TCGA 4 cut(s) 88, 112, 250, 317
TasI AATT 1 cut(s) 463
TauI GCSGC 2 cut(s) 8, 43
TseI GCWGC 1 cut(s) 500
Van91I CCANNNNNTGG 1 cut(s) 172
VneI GTGCAC 1 cut(s) 311
XapI RAATTY 1 cut(s) 463
XbaI TCTAGA 1 cut(s) 506
XspI CTAG 2 cut(s) 507, 556
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.