Rw3G017480

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr3
OG0014877
Physical Location & Seq
Forward (+)
18951030 .. 18957497
6468 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw3G017480.1

Sequence Viewer

Length: 648 bp
ATGGCTGGAGGCAAGAGTAATACTAATGGTAATACCACTCCCAATTGCGCAGAGTTGGAAAGGAGAGAATGTGAAAATGATGCAAAGACTCTTGTGAACTTTTACAAGGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGGAATCTGATGCTGAAAAAGTCATATCTGAACATCTTTTGACCTTCAAGGACATAAATGGTCTGGTTCAGCAGAATGCCCAGCTCAGGAGTCTTGTTCGCAATCTTTCTGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGAAAATTTTGAAAAGGAGCTCAAGAAGCATACTGAGGAAGCTGCTTCTAGAGTTGAGGCTGTATTACAAAGAGCTGAAGAGCAAGGGCAAATGATTGAATCCCTTCACACCTCTGCTATGTTGGCATTACGTGCTGCAAAGGATGAGATTAAGAATTTGAAAGATGAAATGCAGGCTACTAAAGATCACATGCTACAGTATAAGAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGCACATGAAAACTTCAAGATTGAGGTACTGCTGCCTTACTTTAATTTTAGCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

215

Amino Acids

24.49

Weight (kDa)

5.28

Isoelectric Point (pI)

34.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR PF25785 36 - 111 2.2e-21 Nucleoprotein TPR-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 49
AcsI RAATTY 3 cut(s) 346, 496, 587
AcuI CTGAAG 1 cut(s) 438
AfaI GTAC 1 cut(s) 618
AfiI CCNNNNNNNGG 1 cut(s) 285
AgsI TTSAA 9 cut(s) 124, 247, 320, 340, 353, 440, 502, 577, 607
AloI GAACNNNNNNTCC 2 cut(s) 320, 352
AluBI AGCT 7 cut(s) 145, 283, 316, 361, 383, 416, 554
AluI AGCT 7 cut(s) 145, 283, 316, 361, 383, 416, 554
Alw21I GWGCWC 2 cut(s) 198, 363
Alw44I GTGCAC 1 cut(s) 194
ApaLI GTGCAC 1 cut(s) 194
ApeKI GCWGC 3 cut(s) 383, 476, 622
ApoI RAATTY 3 cut(s) 346, 496, 587
Asp700I GAANNNNTTC 1 cut(s) 444
AspLEI GCGC 1 cut(s) 50
BaeGI GKGCMC 1 cut(s) 198
BanII GRGCYC 1 cut(s) 363
Bbv12I GWGCWC 2 cut(s) 198, 363
BbvI GCAGC 3 cut(s) 370, 463, 609
BccI CCATC 1 cut(s) 577
BfaI CTAG 1 cut(s) 390
BfmI CTRYAG 1 cut(s) 536
BisI GCNGC 3 cut(s) 384, 477, 623
BlsI GCNGC 3 cut(s) 385, 478, 624
BmsI GCATC 4 cut(s) 70, 164, 199, 559
BplI GAGNNNNNCTC 2 cut(s) 538, 570
BpmI CTGGAG 1 cut(s) 27
Bpu10I CCTNAGC 2 cut(s) 284, 555
BpuEI CTTGAG 1 cut(s) 347
BsaAI YACGTR 1 cut(s) 473
BsaXI ACNNNNNCTCC 2 cut(s) 55, 85
Bsc4I CCNNNNNNNGG 1 cut(s) 285
BseGI GGATG 2 cut(s) 490, 574
BseLI CCNNNNNNNGG 1 cut(s) 285
BseMII CTCAG 3 cut(s) 298, 366, 569
BseSI GKGCMC 1 cut(s) 198
BseXI GCAGC 3 cut(s) 370, 463, 609
BseYI CCCAGC 1 cut(s) 279
BsiHKAI GWGCWC 2 cut(s) 198, 363
BslI CCNNNNNNNGG 1 cut(s) 285
BsmI GAATGC 1 cut(s) 280
Bsp1286I GDGCHC 2 cut(s) 198, 363
Bsp143I GATC 1 cut(s) 526
BspCNI CTCAG 3 cut(s) 297, 367, 568
BspHI TCATGA 1 cut(s) 166
BspQI GCTCTTC 1 cut(s) 414
BssMI GATC 1 cut(s) 526
Bst4CI ACNGT 1 cut(s) 540
Bst6I CTCTTC 1 cut(s) 414
BstAPI GCANNNNNTGC 1 cut(s) 473
BstBAI YACGTR 1 cut(s) 473
BstC8I GCNNGC 1 cut(s) 516
BstDEI CTNAG 3 cut(s) 284, 375, 555
BstF5I GGATG 2 cut(s) 490, 574
BstHHI GCGC 1 cut(s) 50
BstKTI GATC 1 cut(s) 529
BstMBI GATC 1 cut(s) 526
BstMWI GCNNNNNNNGC 3 cut(s) 367, 464, 473
BstNSI RCATGY 1 cut(s) 535
BstSFI CTRYAG 1 cut(s) 536
BstSLI GKGCMC 1 cut(s) 198
BstV1I GCAGC 3 cut(s) 370, 463, 609
BtsCI GGATG 2 cut(s) 490, 574
Cac8I GCNNGC 1 cut(s) 516
CciI TCATGA 1 cut(s) 166
CfoI GCGC 1 cut(s) 50
Csp6I GTAC 1 cut(s) 617
CviAII CATG 3 cut(s) 167, 532, 596
CviQI GTAC 1 cut(s) 617
DdeI CTNAG 3 cut(s) 284, 375, 555
DpnI GATC 1 cut(s) 528
DpnII GATC 1 cut(s) 526
Eam1104I CTCTTC 1 cut(s) 414
EarI CTCTTC 1 cut(s) 414
Ecl136II GAGCTC 1 cut(s) 361
Eco24I GRGCYC 1 cut(s) 363
Eco53kI GAGCTC 1 cut(s) 361
Eco57I CTGAAG 1 cut(s) 438
EcoICRI GAGCTC 1 cut(s) 361
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 1 cut(s) 363
FaeI CATG 3 cut(s) 170, 535, 599
FatI CATG 3 cut(s) 166, 531, 595
Fnu4HI GCNGC 3 cut(s) 384, 477, 623
FokI GGATG 2 cut(s) 497, 581
FriOI GRGCYC 1 cut(s) 363
Fsp4HI GCNGC 3 cut(s) 384, 477, 623
FspBI CTAG 1 cut(s) 390
FspI TGCGCA 1 cut(s) 49
GlaI GCGC 1 cut(s) 49
GluI GCNGC 3 cut(s) 384, 477, 623
GsaI CCCAGC 1 cut(s) 283
GsuI CTGGAG 1 cut(s) 27
HhaI GCGC 1 cut(s) 50
Hin1II CATG 3 cut(s) 170, 535, 599
Hin6I GCGC 1 cut(s) 48
HinP1I GCGC 1 cut(s) 48
HinfI GANTC 4 cut(s) 88, 203, 289, 440
Hpy166II GTNNAC 2 cut(s) 97, 196
Hpy188I TCNGA 4 cut(s) 202, 208, 229, 310
Hpy188III TCNNGA 6 cut(s) 134, 167, 286, 364, 390, 607
Hpy8I GTNNAC 2 cut(s) 97, 196
HpyAV CCTTC 2 cut(s) 253, 455
HpyCH4III ACNGT 1 cut(s) 540
HpyCH4IV ACGT 1 cut(s) 472
HpyCH4V TGCA 7 cut(s) 83, 155, 196, 479, 514, 572, 593
HpyF10VI GCNNNNNNNGC 3 cut(s) 367, 464, 473
HpyF3I CTNAG 3 cut(s) 284, 375, 555
HpySE526I ACGT 1 cut(s) 472
Hsp92II CATG 3 cut(s) 170, 535, 599
HspAI GCGC 1 cut(s) 48
Kzo9I GATC 1 cut(s) 526
LguI GCTCTTC 1 cut(s) 414
LmnI GCTCC 1 cut(s) 358
LpnPI CCDG 6 cut(s) 248, 271, 293, 326, 500, 542
Lsp1109I GCAGC 3 cut(s) 370, 463, 609
LweI GCATC 4 cut(s) 70, 164, 199, 559
MaeI CTAG 1 cut(s) 390
MaeII ACGT 1 cut(s) 472
MalI GATC 1 cut(s) 528
MboI GATC 1 cut(s) 526
MboII GAAGA 2 cut(s) 150, 431
MfeI CAATTG 1 cut(s) 43
MhlI GDGCHC 2 cut(s) 198, 363
MluCI AATT 5 cut(s) 43, 346, 496, 587, 634
MlyI GAGTC 2 cut(s) 82, 298
MmeI TCCRAC 1 cut(s) 36
MnlI CCTC 5 cut(s) 370, 391, 463, 559, 607
Mph1103I ATGCAT 1 cut(s) 574
MroXI GAANNNNTTC 1 cut(s) 444
MseI TTAA 2 cut(s) 492, 633
MunI CAATTG 1 cut(s) 43
Mva1269I GAATGC 1 cut(s) 280
MwoI GCNNNNNNNGC 3 cut(s) 367, 464, 473
NdeII GATC 1 cut(s) 526
NlaIII CATG 3 cut(s) 170, 535, 599
NsbI TGCGCA 1 cut(s) 49
NsiI ATGCAT 1 cut(s) 574
NspI RCATGY 1 cut(s) 535
PagI TCATGA 1 cut(s) 166
PciSI GCTCTTC 1 cut(s) 414
PctI GAATGC 1 cut(s) 280
PdmI GAANNNNTTC 1 cut(s) 444
PfeI GAWTC 2 cut(s) 203, 440
PkrI GCNGC 3 cut(s) 385, 478, 624
PleI GAGTC 2 cut(s) 82, 297
PpsI GAGTC 2 cut(s) 82, 297
Ppu21I YACGTR 1 cut(s) 473
Psp124BI GAGCTC 1 cut(s) 363
PspFI CCCAGC 1 cut(s) 279
RsaI GTAC 1 cut(s) 618
RsaNI GTAC 1 cut(s) 617
SacI GAGCTC 1 cut(s) 363
SapI GCTCTTC 1 cut(s) 414
SaqAI TTAA 2 cut(s) 492, 633
SatI GCNGC 3 cut(s) 384, 477, 623
Sau3AI GATC 1 cut(s) 526
SchI GAGTC 2 cut(s) 82, 298
SduI GDGCHC 2 cut(s) 198, 363
SfaNI GCATC 4 cut(s) 70, 164, 199, 559
SfcI CTRYAG 1 cut(s) 536
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
Sse9I AATT 5 cut(s) 43, 346, 496, 587, 634
SspMI CTAG 1 cut(s) 390
SstI GAGCTC 1 cut(s) 363
TaaI ACNGT 1 cut(s) 540
TaiI ACGT 1 cut(s) 475
TaqI TCGA 1 cut(s) 133
TasI AATT 5 cut(s) 43, 346, 496, 587, 634
TfiI GAWTC 2 cut(s) 203, 440
Tru1I TTAA 2 cut(s) 492, 633
Tru9I TTAA 2 cut(s) 492, 633
TseI GCWGC 3 cut(s) 383, 476, 622
TspDTI ATGAA 2 cut(s) 522, 612
VneI GTGCAC 1 cut(s) 194
XapI RAATTY 3 cut(s) 346, 496, 587
XbaI TCTAGA 1 cut(s) 389
XceI RCATGY 1 cut(s) 535
XmnI GAANNNNTTC 1 cut(s) 444
XspI CTAG 1 cut(s) 390
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.