Rroxscaffold_4G00326750

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014877
Physical Location & Seq
Reverse (-)
58926224 .. 58951315
25092 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00326750.1

Sequence Viewer

Length: 951 bp
ATGCCTCCCCCTGCAGCAAGGCTTAAAACATGGAATTATGTTTGTATCGTGTACTCTTACTGCAACAATGTGATCTTTACTGCAGTGATGAAGACCACCACAATGATGTTAGTTTCAAGGCCATGTGAAGGGAAATATAGTGTGTATTTGGGGAAGAGACTTAAGGTCTATGAGGTTAAGGGAGCTATCCGGAATCCTACGCTTTCTTCAATTCGTGGAGTTGACTGCATGATTCTTCTCATCTCGGGTAATCTTAAATCCTTGGGACTTGTTGAATTGGGTAATTCTCGCTCTTCCATGTTGGATGGCTTAAGCATGCAGATGGGTTATGTGTTGTTGGGATGTCTTGTGATGTCTTATGTGTTGTTGGGATCTCTTGTGATGCCTCGATATCTCCGTGTGGTTTGGAACCCAGCCAAGTTGGGAGACTCAGCCCCATGCCCGGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGGAATCGATGCTGAAAAAGTCATATCTCGAACATCTTGTAAGCCGACTTCTTATTTTTCTTCAGCATGGGTCTTTTAAGTTCTCTTCTTCTTTCCGTATTGTTGGATGTTTATTTATTAGTGGTATTTTGGATTTTAAAATGAAACAGTTGACCTTCAAGGACATAAATGGTCCGGTTCAGCAGAATGCCCAGCTTAGGAGTCTTGTTCGCAATCTTTCGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGAGATCTGGTATTTTGCTACAGCACTAGTGGAATGAAATATATGTGCGTAACGATAAGCAACATCAAGGAAGGAAGTGAAGAAAATTCAACCCGGTGCTCTAGCACGGTAGACCTCATAAGTTCCGAAAGCCTGATCACGACCACAATGTTTCCCTTGATTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

316

Amino Acids

35.06

Weight (kDa)

9.44

Isoelectric Point (pI)

40.8

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 897
AccIII TCCGGA 1 cut(s) 189
AclWI GGATC 1 cut(s) 379
AcsI RAATTY 1 cut(s) 871
AcuI CTGAAG 1 cut(s) 581
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 3 cut(s) 128, 442, 732
AflII CTTAAG 2 cut(s) 161, 310
AgsI TTSAA 8 cut(s) 117, 210, 275, 460, 694, 766, 786, 876
AhdI GACNNNNNGTC 1 cut(s) 164
AhlI ACTAGT 1 cut(s) 812
AloI GAACNNNNNNTCC 2 cut(s) 766, 798
AluBI AGCT 4 cut(s) 185, 481, 730, 762
AluI AGCT 4 cut(s) 185, 481, 730, 762
Alw21I GWGCWC 2 cut(s) 534, 887
Alw26I GTCTC 2 cut(s) 151, 420
Alw44I GTGCAC 1 cut(s) 530
AlwI GGATC 1 cut(s) 379
Ama87I CYCGRG 1 cut(s) 244
Aor13HI TCCGGA 1 cut(s) 189
AoxI GGCC 1 cut(s) 119
ApaLI GTGCAC 1 cut(s) 530
ApeKI GCWGC 1 cut(s) 14
ApoI RAATTY 1 cut(s) 871
AspS9I GGNCC 1 cut(s) 707
AsuC2I CCSGG 2 cut(s) 443, 880
AvaI CYCGRG 1 cut(s) 244
AvaII GGWCC 1 cut(s) 707
BaeGI GKGCMC 1 cut(s) 534
BarI GAAGNNNNNNTAC 2 cut(s) 567, 599
BbsI GAAGAC 1 cut(s) 98
Bbv12I GWGCWC 2 cut(s) 534, 887
BbvI GCAGC 1 cut(s) 26
BccI CCATC 2 cut(s) 299, 316
BclI TGATCA 1 cut(s) 921
BcnI CCSGG 2 cut(s) 443, 880
BcoDI GTCTC 2 cut(s) 151, 420
BcuI ACTAGT 1 cut(s) 812
BfaI CTAG 2 cut(s) 813, 888
BfmI CTRYAG 3 cut(s) 12, 81, 805
BfrI CTTAAG 2 cut(s) 161, 310
BglII AGATCT 1 cut(s) 790
BisI GCNGC 1 cut(s) 15
BlsI GCNGC 1 cut(s) 16
Bme1390I CCNGG 2 cut(s) 443, 880
Bme18I GGWCC 1 cut(s) 707
BmeRI GACNNNNNGTC 1 cut(s) 164
BmeT110I CYCGRG 1 cut(s) 244
BmgT120I GGNCC 1 cut(s) 707
BmiI GGNNCC 1 cut(s) 410
BmrFI CCNGG 2 cut(s) 443, 880
BmsI GCATC 3 cut(s) 372, 500, 534
BpiI GAAGAC 1 cut(s) 98
Bpu10I CCTNAGC 1 cut(s) 731
BpuMI CCSGG 2 cut(s) 443, 880
Bsa29I ATCGAT 1 cut(s) 542
BsaJI CCNNGG 1 cut(s) 261
BsaWI WCCGGW 2 cut(s) 189, 709
Bsc4I CCNNNNNNNGG 3 cut(s) 128, 442, 732
BseAI TCCGGA 1 cut(s) 189
BseCI ATCGAT 1 cut(s) 542
BseDI CCNNGG 1 cut(s) 261
BseGI GGATG 3 cut(s) 310, 347, 647
BseLI CCNNNNNNNGG 3 cut(s) 128, 442, 732
BseMII CTCAG 1 cut(s) 444
BseSI GKGCMC 1 cut(s) 534
BseXI GCAGC 1 cut(s) 26
BseYI CCCAGC 2 cut(s) 412, 726
BshFI GGCC 1 cut(s) 121
BshVI ATCGAT 1 cut(s) 542
BsiHKAI GWGCWC 2 cut(s) 534, 887
BsiHKCI CYCGRG 1 cut(s) 244
BsiSI CCGG 4 cut(s) 190, 443, 710, 880
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 3 cut(s) 128, 442, 732
BsmAI GTCTC 2 cut(s) 151, 420
BsmFI GGGAC 1 cut(s) 279
BsmI GAATGC 1 cut(s) 727
BsnI GGCC 1 cut(s) 121
BsoBI CYCGRG 1 cut(s) 244
Bsp1286I GDGCHC 2 cut(s) 534, 887
Bsp13I TCCGGA 1 cut(s) 189
Bsp143I GATC 4 cut(s) 72, 371, 790, 921
BspANI GGCC 1 cut(s) 121
BspCNI CTCAG 1 cut(s) 443
BspDI ATCGAT 1 cut(s) 542
BspEI TCCGGA 1 cut(s) 189
BspHI TCATGA 1 cut(s) 502
BspLI GGNNCC 1 cut(s) 410
BspMAI CTGCAG 2 cut(s) 16, 85
BspPI GGATC 1 cut(s) 379
BspQI GCTCTTC 1 cut(s) 298
BspTI CTTAAG 2 cut(s) 161, 310
BssECI CCNNGG 1 cut(s) 261
BssMI GATC 4 cut(s) 72, 371, 790, 921
BssT1I CCWWGG 1 cut(s) 261
Bst4CI ACNGT 2 cut(s) 684, 895
Bst6I CTCTTC 3 cut(s) 149, 298, 625
BstAFI CTTAAG 2 cut(s) 161, 310
BstC8I GCNNGC 1 cut(s) 317
BstDEI CTNAG 2 cut(s) 430, 731
BstF5I GGATG 3 cut(s) 310, 347, 647
BstKTI GATC 4 cut(s) 75, 374, 793, 924
BstMAI GTCTC 2 cut(s) 151, 420
BstMBI GATC 4 cut(s) 72, 371, 790, 921
BstNSI RCATGY 1 cut(s) 319
BstSCI CCNGG 2 cut(s) 441, 878
BstSFI CTRYAG 3 cut(s) 12, 81, 805
BstSLI GKGCMC 1 cut(s) 534
BstV1I GCAGC 1 cut(s) 26
BstV2I GAAGAC 1 cut(s) 98
BstX2I RGATCY 2 cut(s) 371, 790
BstYI RGATCY 2 cut(s) 371, 790
Bsu15I ATCGAT 1 cut(s) 542
BsuRI GGCC 1 cut(s) 121
BsuTUI ATCGAT 1 cut(s) 542
BtsCI GGATG 3 cut(s) 310, 347, 647
BtsI GCAGTG 1 cut(s) 90
BtsIMutI CAGTG 1 cut(s) 90
Cac8I GCNNGC 1 cut(s) 317
CciI TCATGA 1 cut(s) 502
Cfr13I GGNCC 1 cut(s) 707
ClaI ATCGAT 1 cut(s) 542
Csp6I GTAC 1 cut(s) 52
CviAII CATG 8 cut(s) 30, 123, 229, 298, 316, 438, 503, 602
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 430, 731
DpnI GATC 4 cut(s) 74, 373, 792, 923
DpnII GATC 4 cut(s) 72, 371, 790, 921
DraI TTTAAA 1 cut(s) 673
DriI GACNNNNNGTC 1 cut(s) 164
Eam1104I CTCTTC 3 cut(s) 149, 298, 625
Eam1105I GACNNNNNGTC 1 cut(s) 164
EarI CTCTTC 3 cut(s) 149, 298, 625
Eco130I CCWWGG 1 cut(s) 261
Eco32I GATATC 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 707
Eco57I CTGAAG 1 cut(s) 581
Eco88I CYCGRG 1 cut(s) 244
EcoRV GATATC 1 cut(s) 392
EcoT14I CCWWGG 1 cut(s) 261
ErhI CCWWGG 1 cut(s) 261
FaeI CATG 8 cut(s) 33, 126, 232, 301, 319, 441, 506, 605
FaqI GGGAC 1 cut(s) 279
FatI CATG 8 cut(s) 29, 122, 228, 297, 315, 437, 502, 601
FbaI TGATCA 1 cut(s) 921
FblI GTMKAC 1 cut(s) 897
Fnu4HI GCNGC 1 cut(s) 15
FokI GGATG 3 cut(s) 317, 354, 654
Fsp4HI GCNGC 1 cut(s) 15
FspBI CTAG 2 cut(s) 813, 888
GluI GCNGC 1 cut(s) 15
GsaI CCCAGC 2 cut(s) 416, 730
HaeIII GGCC 1 cut(s) 121
HapII CCGG 4 cut(s) 190, 443, 710, 880
Hin1II CATG 8 cut(s) 33, 126, 232, 301, 319, 441, 506, 605
HincII GTYRAC 2 cut(s) 223, 687
HindII GTYRAC 2 cut(s) 223, 687
HinfI GANTC 5 cut(s) 193, 232, 428, 539, 736
HpaII CCGG 4 cut(s) 190, 443, 710, 880
Hpy166II GTNNAC 5 cut(s) 52, 223, 532, 687, 898
Hpy188I TCNGA 2 cut(s) 538, 913
Hpy188III TCNNGA 6 cut(s) 190, 470, 503, 563, 786, 925
Hpy8I GTNNAC 5 cut(s) 52, 223, 532, 687, 898
HpyAV CCTTC 3 cut(s) 122, 700, 851
HpyCH4III ACNGT 2 cut(s) 684, 895
HpyCH4V TGCA 7 cut(s) 14, 63, 83, 228, 319, 491, 532
HpyF3I CTNAG 2 cut(s) 430, 731
Hsp92II CATG 8 cut(s) 33, 126, 232, 301, 319, 441, 506, 605
Kpn2I TCCGGA 1 cut(s) 189
Ksp22I TGATCA 1 cut(s) 921
Kzo9I GATC 4 cut(s) 72, 371, 790, 921
LguI GCTCTTC 1 cut(s) 298
LmnI GCTCC 1 cut(s) 182
Lsp1109I GCAGC 1 cut(s) 26
LweI GCATC 3 cut(s) 372, 500, 534
MaeI CTAG 2 cut(s) 813, 888
MaeIII GTNAC 1 cut(s) 835
MalI GATC 4 cut(s) 74, 373, 792, 923
MboI GATC 4 cut(s) 72, 371, 790, 921
MflI RGATCY 2 cut(s) 371, 790
MhlI GDGCHC 2 cut(s) 534, 887
MluCI AATT 5 cut(s) 34, 210, 275, 283, 871
MlyI GAGTC 2 cut(s) 422, 745
MmeI TCCRAC 2 cut(s) 282, 619
MnlI CCTC 4 cut(s) 15, 166, 396, 911
MroI TCCGGA 1 cut(s) 189
MseI TTAA 8 cut(s) 24, 162, 177, 255, 311, 612, 672, 949
MslI CAYNNNNRTG 3 cut(s) 101, 104, 320
MspCI CTTAAG 2 cut(s) 161, 310
MspI CCGG 4 cut(s) 190, 443, 710, 880
MspR9I CCNGG 2 cut(s) 443, 880
Mva1269I GAATGC 1 cut(s) 727
NciI CCSGG 2 cut(s) 443, 880
NdeII GATC 4 cut(s) 72, 371, 790, 921
NlaIII CATG 8 cut(s) 33, 126, 232, 301, 319, 441, 506, 605
NlaIV GGNNCC 1 cut(s) 410
NspI RCATGY 1 cut(s) 319
PaeI GCATGC 1 cut(s) 319
PagI TCATGA 1 cut(s) 502
PciSI GCTCTTC 1 cut(s) 298
PcsI WCGNNNNNNNCGW 1 cut(s) 394
PctI GAATGC 1 cut(s) 727
PfeI GAWTC 3 cut(s) 193, 232, 539
PkrI GCNGC 1 cut(s) 16
PleI GAGTC 2 cut(s) 422, 744
PpsI GAGTC 2 cut(s) 422, 744
PspFI CCCAGC 2 cut(s) 412, 726
PspN4I GGNNCC 1 cut(s) 410
PspPI GGNCC 1 cut(s) 707
PstI CTGCAG 2 cut(s) 16, 85
PsuI RGATCY 2 cut(s) 371, 790
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
RseI CAYNNNNRTG 3 cut(s) 101, 104, 320
SapI GCTCTTC 1 cut(s) 298
SaqAI TTAA 8 cut(s) 24, 162, 177, 255, 311, 612, 672, 949
SatI GCNGC 1 cut(s) 15
Sau3AI GATC 4 cut(s) 72, 371, 790, 921
Sau96I GGNCC 1 cut(s) 707
SchI GAGTC 2 cut(s) 422, 745
ScrFI CCNGG 2 cut(s) 443, 880
SduI GDGCHC 2 cut(s) 534, 887
SetI ASST 8 cut(s) 168, 177, 187, 483, 692, 732, 764, 903
SfaNI GCATC 3 cut(s) 372, 500, 534
SfcI CTRYAG 3 cut(s) 12, 81, 805
SinI GGWCC 1 cut(s) 707
SmiMI CAYNNNNRTG 3 cut(s) 101, 104, 320
SmlI CTYRAG 2 cut(s) 161, 310
SmoI CTYRAG 2 cut(s) 161, 310
SpeI ACTAGT 1 cut(s) 812
SphI GCATGC 1 cut(s) 319
Sse9I AATT 5 cut(s) 34, 210, 275, 283, 871
SspMI CTAG 2 cut(s) 813, 888
StyD4I CCNGG 2 cut(s) 441, 878
StyI CCWWGG 1 cut(s) 261
TaaI ACNGT 2 cut(s) 684, 895
TaqI TCGA 5 cut(s) 388, 469, 542, 564, 755
TasI AATT 5 cut(s) 34, 210, 275, 283, 871
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 3 cut(s) 193, 232, 539
Tru1I TTAA 8 cut(s) 24, 162, 177, 255, 311, 612, 672, 949
Tru9I TTAA 8 cut(s) 24, 162, 177, 255, 311, 612, 672, 949
TscAI CASTG 1 cut(s) 90
TseI GCWGC 1 cut(s) 14
TspDTI ATGAA 3 cut(s) 104, 692, 836
TspGWI ACGGA 2 cut(s) 386, 620
TspRI CASTG 1 cut(s) 90
Vha464I CTTAAG 2 cut(s) 161, 310
VneI GTGCAC 1 cut(s) 530
VpaK11BI GGWCC 1 cut(s) 707
XapI RAATTY 1 cut(s) 871
XceI RCATGY 1 cut(s) 319
XmiI GTMKAC 1 cut(s) 897
XspI CTAG 2 cut(s) 813, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.