Rroxscaffold_2G00133490

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0014877
Physical Location & Seq
Reverse (-)
70846316 .. 70850935
4620 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00133490.1

Sequence Viewer

Length: 495 bp
ATGGCTCAGTTTTTGGAAAGGAGAGAATGTGAAAATGATGCAAAGACTCTTGTGAACTTTTACAAGGTGGCAGTCCTTTTGAAAGAATGTCAAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGGAATCCGATGCTGAAAAGTCATATCTGAACATCTTTGGTATTTTGGATTTTAAAATGAAACAGTTGACCTTCAAGGACATAAATGGTCTGGTTCAGCAGAATGCCCAGCTCGGGAGTCTTGTTCGCAATCTTTCGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGTTGGAAAATTTTGAAAAGGAGCTCAAGAAGCATACCGAGGAAGCTGCTTCTAGAGTTGAGTATAAAAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGCACATGAAAACTTCAAGATTGAGGTACTGCTGCCTTACTTTAATTTTAGCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

164

Amino Acids

18.82

Weight (kDa)

5.86

Isoelectric Point (pI)

41.96

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR PF25785 22 - 101 9.5e-11 Nucleoprotein TPR-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 2 cut(s) 334, 434
AfaI GTAC 1 cut(s) 465
AfiI CCNNNNNNNGG 1 cut(s) 270
AgsI TTSAA 7 cut(s) 82, 232, 304, 324, 341, 424, 454
AloI GAACNNNNNNTCC 2 cut(s) 304, 336
AluBI AGCT 6 cut(s) 103, 268, 300, 349, 371, 401
AluI AGCT 6 cut(s) 103, 268, 300, 349, 371, 401
Alw21I GWGCWC 2 cut(s) 156, 351
Alw44I GTGCAC 1 cut(s) 152
Ama87I CYCGRG 1 cut(s) 269
ApaLI GTGCAC 1 cut(s) 152
ApeKI GCWGC 2 cut(s) 371, 469
ApoI RAATTY 2 cut(s) 334, 434
AvaI CYCGRG 1 cut(s) 269
BaeGI GKGCMC 1 cut(s) 156
BanII GRGCYC 1 cut(s) 351
Bbv12I GWGCWC 2 cut(s) 156, 351
BbvI GCAGC 2 cut(s) 358, 456
BccI CCATC 1 cut(s) 424
BcgI CGANNNNNNTGC 2 cut(s) 353, 387
BfaI CTAG 1 cut(s) 378
BisI GCNGC 2 cut(s) 372, 470
BlsI GCNGC 2 cut(s) 373, 471
BmeT110I CYCGRG 1 cut(s) 269
BmsI GCATC 4 cut(s) 28, 122, 157, 406
Bpu10I CCTNAGC 1 cut(s) 402
BpuEI CTTGAG 1 cut(s) 335
BsaJI CCNNGG 1 cut(s) 363
BsaXI ACNNNNNCTCC 2 cut(s) 13, 43
Bsc4I CCNNNNNNNGG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 363
BseGI GGATG 1 cut(s) 421
BseLI CCNNNNNNNGG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 20, 416
BseSI GKGCMC 1 cut(s) 156
BseXI GCAGC 2 cut(s) 358, 456
BseYI CCCAGC 1 cut(s) 264
BsiHKAI GWGCWC 2 cut(s) 156, 351
BsiHKCI CYCGRG 1 cut(s) 269
BslI CCNNNNNNNGG 1 cut(s) 270
BsmI GAATGC 1 cut(s) 265
BsoBI CYCGRG 1 cut(s) 269
Bsp1286I GDGCHC 2 cut(s) 156, 351
BspCNI CTCAG 2 cut(s) 19, 415
BspHI TCATGA 1 cut(s) 124
BssECI CCNNGG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 222
BstDEI CTNAG 2 cut(s) 6, 402
BstF5I GGATG 1 cut(s) 421
BstMWI GCNNNNNNNGC 1 cut(s) 355
BstSLI GKGCMC 1 cut(s) 156
BstV1I GCAGC 2 cut(s) 358, 456
BtsCI GGATG 1 cut(s) 421
CciI TCATGA 1 cut(s) 124
Csp6I GTAC 1 cut(s) 464
CviAII CATG 2 cut(s) 125, 443
CviJI RGCY 7 cut(s) 5, 103, 268, 300, 349, 371, 401
CviKI_1 RGCY 7 cut(s) 5, 103, 268, 300, 349, 371, 401
CviQI GTAC 1 cut(s) 464
DdeI CTNAG 2 cut(s) 6, 402
DraI TTTAAA 1 cut(s) 211
Ecl136II GAGCTC 1 cut(s) 349
Eco24I GRGCYC 1 cut(s) 351
Eco53kI GAGCTC 1 cut(s) 349
Eco88I CYCGRG 1 cut(s) 269
EcoICRI GAGCTC 1 cut(s) 349
EcoT22I ATGCAT 1 cut(s) 421
EcoT38I GRGCYC 1 cut(s) 351
FaeI CATG 2 cut(s) 128, 446
FaiI YATR 9 cut(s) 98, 126, 135, 181, 239, 360, 390, 398, 444
FatI CATG 2 cut(s) 124, 442
Fnu4HI GCNGC 2 cut(s) 372, 470
FokI GGATG 1 cut(s) 428
FriOI GRGCYC 1 cut(s) 351
Fsp4HI GCNGC 2 cut(s) 372, 470
FspBI CTAG 1 cut(s) 378
GluI GCNGC 2 cut(s) 372, 470
GsaI CCCAGC 1 cut(s) 268
Hin1II CATG 2 cut(s) 128, 446
HincII GTYRAC 1 cut(s) 225
HindII GTYRAC 1 cut(s) 225
HinfI GANTC 3 cut(s) 46, 161, 274
Hpy166II GTNNAC 3 cut(s) 55, 154, 225
Hpy188I TCNGA 3 cut(s) 160, 166, 186
Hpy188III TCNNGA 6 cut(s) 92, 125, 271, 352, 378, 454
Hpy8I GTNNAC 3 cut(s) 55, 154, 225
HpyAV CCTTC 1 cut(s) 238
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 5 cut(s) 41, 113, 154, 419, 440
HpyF10VI GCNNNNNNNGC 1 cut(s) 355
HpyF3I CTNAG 2 cut(s) 6, 402
Hsp92II CATG 2 cut(s) 128, 446
LmnI GCTCC 1 cut(s) 346
LpnPI CCDG 4 cut(s) 233, 278, 310, 389
Lsp1109I GCAGC 2 cut(s) 358, 456
LweI GCATC 4 cut(s) 28, 122, 157, 406
MaeI CTAG 1 cut(s) 378
MboII GAAGA 1 cut(s) 108
MhlI GDGCHC 2 cut(s) 156, 351
MluCI AATT 3 cut(s) 334, 434, 481
MlyI GAGTC 2 cut(s) 40, 283
MmeI TCCRAC 1 cut(s) 309
MnlI CCTC 3 cut(s) 358, 406, 454
Mph1103I ATGCAT 1 cut(s) 421
MseI TTAA 2 cut(s) 210, 480
Mva1269I GAATGC 1 cut(s) 265
MwoI GCNNNNNNNGC 1 cut(s) 355
NlaIII CATG 2 cut(s) 128, 446
NsiI ATGCAT 1 cut(s) 421
PagI TCATGA 1 cut(s) 124
PctI GAATGC 1 cut(s) 265
PfeI GAWTC 1 cut(s) 161
PkrI GCNGC 2 cut(s) 373, 471
PleI GAGTC 2 cut(s) 40, 282
PpsI GAGTC 2 cut(s) 40, 282
Psp124BI GAGCTC 1 cut(s) 351
PspFI CCCAGC 1 cut(s) 264
RsaI GTAC 1 cut(s) 465
RsaNI GTAC 1 cut(s) 464
SacI GAGCTC 1 cut(s) 351
SaqAI TTAA 2 cut(s) 210, 480
SatI GCNGC 2 cut(s) 372, 470
SchI GAGTC 2 cut(s) 40, 283
SduI GDGCHC 2 cut(s) 156, 351
SfaNI GCATC 4 cut(s) 28, 122, 157, 406
SmlI CTYRAG 1 cut(s) 350
SmoI CTYRAG 1 cut(s) 350
Sse9I AATT 3 cut(s) 334, 434, 481
SspMI CTAG 1 cut(s) 378
SstI GAGCTC 1 cut(s) 351
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 1 cut(s) 293
TasI AATT 3 cut(s) 334, 434, 481
TfiI GAWTC 1 cut(s) 161
Tru1I TTAA 2 cut(s) 210, 480
Tru9I TTAA 2 cut(s) 210, 480
TseI GCWGC 2 cut(s) 371, 469
TspDTI ATGAA 2 cut(s) 230, 459
VneI GTGCAC 1 cut(s) 152
XapI RAATTY 2 cut(s) 334, 434
XbaI TCTAGA 1 cut(s) 377
XspI CTAG 1 cut(s) 378
Zsp2I ATGCAT 1 cut(s) 421
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.