Rroxscaffold_4G00297500

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0014877
Physical Location & Seq
Reverse (-)
17403589 .. 17409842
6254 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00297500.1

Sequence Viewer

Length: 573 bp
ATGGGGGGTCTGTCTCCATTTGTACTACTCGAGAGGTTTGCGTCGGCGGCGGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACGGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGGAATGCGATGCTTTGAAAAAGTCATATCGAACATCTTTTGATCTTCAAGGACATAAATGGTCCGGTTCAGCGAATGCCCGACTTAGGAGTCTTGTTCGCAATCTTTCGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGCTTAAACATTATCGATATTACAGCACGTAGCGCCACCATCGGCCGGAATCGCAACATACATGTCACAATTGAATCGCGGCCCATGAGAACAAGCGAGACCAGTCACATCGAGACACCGGTTCTGCGGCGCTTGTCAAGGTTTCAGATTGAAGTTGGGCCGCCGCGAAGGAGTCGGCAGCCACCAAGCGGGATGGAGTTTAAGGTATCGTTGAGAGCCAGCCGCGACCGTATGAAACCTAAAAGAAAGCCACCAGCCCAAGAGGGTGGTCTAACCATTGACGTATCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

190

Amino Acids

21.1

Weight (kDa)

11.13

Isoelectric Point (pI)

77.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 231
AccII CGCG 3 cut(s) 361, 448, 507
AciI CCGC 8 cut(s) 47, 50, 361, 409, 443, 446, 471, 505
AcoI YGGCCR 1 cut(s) 325
AfaI GTAC 1 cut(s) 24
AfiI CCNNNNNNNGG 3 cut(s) 228, 327, 470
AflIII ACRYGT 1 cut(s) 343
AgeI ACCGGT 1 cut(s) 400
AgsI TTSAA 7 cut(s) 67, 160, 191, 262, 282, 356, 434
AloI GAACNNNNNNTCC 2 cut(s) 262, 294
AluBI AGCT 2 cut(s) 258, 285
AluI AGCT 2 cut(s) 258, 285
Alw21I GWGCWC 1 cut(s) 141
Alw26I GTCTC 3 cut(s) 18, 374, 389
Alw44I GTGCAC 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 3 cut(s) 325, 362, 440
ApaLI GTGCAC 1 cut(s) 137
ApeKI GCWGC 1 cut(s) 460
AsiGI ACCGGT 1 cut(s) 400
AspLEI GCGC 2 cut(s) 317, 414
AspS9I GGNCC 3 cut(s) 204, 363, 440
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 204
BaeGI GKGCMC 1 cut(s) 141
Bbv12I GWGCWC 1 cut(s) 141
BbvI GCAGC 1 cut(s) 472
BccI CCATC 2 cut(s) 329, 469
BceAI ACGGC 1 cut(s) 101
BcgI CGANNNNNNTGC 2 cut(s) 20, 54
BcoDI GTCTC 3 cut(s) 18, 374, 389
BfoI RGCGCY 2 cut(s) 318, 415
BisI GCNGC 7 cut(s) 48, 362, 410, 443, 446, 461, 505
BlsI GCNGC 7 cut(s) 49, 363, 411, 444, 447, 462, 506
Bme18I GGWCC 1 cut(s) 204
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 3 cut(s) 204, 363, 440
BmsI GCATC 2 cut(s) 107, 142
Bsa29I ATCGAT 1 cut(s) 297
BsaAI YACGTR 1 cut(s) 311
BsaI GGTCTC 1 cut(s) 374
BsaWI WCCGGW 2 cut(s) 206, 400
Bsc4I CCNNNNNNNGG 3 cut(s) 228, 327, 470
Bse118I RCCGGY 1 cut(s) 400
Bse1I ACTGG 1 cut(s) 384
BseCI ATCGAT 1 cut(s) 297
BseGI GGATG 1 cut(s) 480
BseLI CCNNNNNNNGG 3 cut(s) 228, 327, 470
BseNI ACTGG 1 cut(s) 384
BseSI GKGCMC 1 cut(s) 141
BseX3I CGGCCG 1 cut(s) 325
BseXI GCAGC 1 cut(s) 472
Bsh1236I CGCG 3 cut(s) 361, 448, 507
Bsh1285I CGRYCG 2 cut(s) 328, 511
BshFI GGCC 3 cut(s) 327, 364, 442
BshTI ACCGGT 1 cut(s) 400
BshVI ATCGAT 1 cut(s) 297
BsiEI CGRYCG 2 cut(s) 328, 511
BsiHKAI GWGCWC 1 cut(s) 141
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 3 cut(s) 207, 328, 401
BslI CCNNNNNNNGG 3 cut(s) 228, 327, 470
BsmAI GTCTC 3 cut(s) 18, 374, 389
BsmI GAATGC 2 cut(s) 152, 223
BsnI GGCC 3 cut(s) 327, 364, 442
Bso31I GGTCTC 1 cut(s) 374
BsoBI CYCGRG 1 cut(s) 29
Bsp1286I GDGCHC 1 cut(s) 141
Bsp143I GATC 1 cut(s) 184
BspACI CCGC 8 cut(s) 47, 50, 361, 409, 443, 446, 471, 505
BspANI GGCC 3 cut(s) 327, 364, 442
BspDI ATCGAT 1 cut(s) 297
BspFNI CGCG 3 cut(s) 361, 448, 507
BspHI TCATGA 1 cut(s) 109
BspTNI GGTCTC 1 cut(s) 374
BsrFI RCCGGY 1 cut(s) 400
BsrI ACTGG 1 cut(s) 384
BssAI RCCGGY 1 cut(s) 400
BssMI GATC 1 cut(s) 184
Bst4CI ACNGT 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 311
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 1 cut(s) 227
BstF5I GGATG 1 cut(s) 480
BstFNI CGCG 3 cut(s) 361, 448, 507
BstH2I RGCGCY 2 cut(s) 318, 415
BstHHI GCGC 2 cut(s) 317, 414
BstKTI GATC 1 cut(s) 187
BstMAI GTCTC 3 cut(s) 18, 374, 389
BstMBI GATC 1 cut(s) 184
BstMCI CGRYCG 2 cut(s) 328, 511
BstMWI GCNNNNNNNGC 4 cut(s) 47, 53, 314, 333
BstNSI RCATGY 1 cut(s) 347
BstSLI GKGCMC 1 cut(s) 141
BstUI CGCG 3 cut(s) 361, 448, 507
BstV1I GCAGC 1 cut(s) 472
BstXI CCANNNNNNTGG 1 cut(s) 548
BstZI CGGCCG 1 cut(s) 325
Bsu15I ATCGAT 1 cut(s) 297
BsuRI GGCC 3 cut(s) 327, 364, 442
BsuTUI ATCGAT 1 cut(s) 297
BtgZI GCGATG 1 cut(s) 165
BtsCI GGATG 1 cut(s) 480
Cac8I GCNNGC 1 cut(s) 502
CciI TCATGA 1 cut(s) 109
CfoI GCGC 2 cut(s) 317, 414
Cfr10I RCCGGY 1 cut(s) 400
Cfr13I GGNCC 3 cut(s) 204, 363, 440
ClaI ATCGAT 1 cut(s) 297
CseI GACGC 1 cut(s) 30
Csp6I GTAC 1 cut(s) 23
CspAI ACCGGT 1 cut(s) 400
CviAII CATG 3 cut(s) 110, 344, 367
CviQI GTAC 1 cut(s) 23
DdeI CTNAG 1 cut(s) 227
DpnI GATC 1 cut(s) 186
DpnII GATC 1 cut(s) 184
DrdI GACNNNNNNGTC 1 cut(s) 231
DseDI GACNNNNNNGTC 1 cut(s) 231
EaeI YGGCCR 1 cut(s) 325
EagI CGGCCG 1 cut(s) 325
EclXI CGGCCG 1 cut(s) 325
Eco31I GGTCTC 1 cut(s) 374
Eco47I GGWCC 1 cut(s) 204
Eco52I CGGCCG 1 cut(s) 325
Eco88I CYCGRG 1 cut(s) 29
FaeI CATG 3 cut(s) 113, 347, 370
FatI CATG 3 cut(s) 109, 343, 366
FauI CCCGC 1 cut(s) 464
Fnu4HI GCNGC 7 cut(s) 48, 362, 410, 443, 446, 461, 505
FokI GGATG 1 cut(s) 487
Fsp4HI GCNGC 7 cut(s) 48, 362, 410, 443, 446, 461, 505
GlaI GCGC 2 cut(s) 316, 413
GluI GCNGC 7 cut(s) 48, 362, 410, 443, 446, 461, 505
HaeII RGCGCY 2 cut(s) 318, 415
HaeIII GGCC 3 cut(s) 327, 364, 442
HapII CCGG 3 cut(s) 207, 328, 401
HgaI GACGC 1 cut(s) 30
HhaI GCGC 2 cut(s) 317, 414
Hin1II CATG 3 cut(s) 113, 347, 370
Hin6I GCGC 2 cut(s) 315, 412
HinP1I GCGC 2 cut(s) 315, 412
HindIII AAGCTT 1 cut(s) 283
HinfI GANTC 4 cut(s) 232, 331, 356, 454
HpaII CCGG 3 cut(s) 207, 328, 401
Hpy166II GTNNAC 1 cut(s) 139
Hpy188I TCNGA 2 cut(s) 145, 429
Hpy188III TCNNGA 4 cut(s) 31, 77, 110, 394
Hpy8I GTNNAC 1 cut(s) 139
Hpy99I CGWCG 1 cut(s) 46
HpyAV CCTTC 1 cut(s) 444
HpyCH4III ACNGT 1 cut(s) 512
HpyCH4IV ACGT 2 cut(s) 310, 564
HpyCH4V TGCA 2 cut(s) 98, 139
HpyF10VI GCNNNNNNNGC 4 cut(s) 47, 53, 314, 333
HpyF3I CTNAG 1 cut(s) 227
HpySE526I ACGT 2 cut(s) 310, 564
Hsp92II CATG 3 cut(s) 113, 347, 370
HspAI GCGC 2 cut(s) 315, 412
Kzo9I GATC 1 cut(s) 184
LpnPI CCDG 7 cut(s) 220, 268, 341, 397, 414, 514, 549
Lsp1109I GCAGC 1 cut(s) 472
LweI GCATC 2 cut(s) 107, 142
MaeII ACGT 2 cut(s) 310, 564
MaeIII GTNAC 2 cut(s) 346, 386
MalI GATC 1 cut(s) 186
MboI GATC 1 cut(s) 184
MboII GAAGA 2 cut(s) 93, 179
MfeI CAATTG 1 cut(s) 351
MhlI GDGCHC 1 cut(s) 141
MluCI AATT 1 cut(s) 351
MlyI GAGTC 2 cut(s) 241, 463
MnlI CCTC 2 cut(s) 27, 538
MseI TTAA 2 cut(s) 287, 483
MspI CCGG 3 cut(s) 207, 328, 401
MunI CAATTG 1 cut(s) 351
Mva1269I GAATGC 2 cut(s) 152, 223
MvnI CGCG 3 cut(s) 361, 448, 507
MwoI GCNNNNNNNGC 4 cut(s) 47, 53, 314, 333
NdeII GATC 1 cut(s) 184
NlaIII CATG 3 cut(s) 113, 347, 370
NmuCI GTSAC 2 cut(s) 346, 386
NspI RCATGY 1 cut(s) 347
PaeR7I CTCGAG 1 cut(s) 29
PagI TCATGA 1 cut(s) 109
PciI ACATGT 1 cut(s) 343
PctI GAATGC 2 cut(s) 152, 223
PfeI GAWTC 2 cut(s) 331, 356
PinAI ACCGGT 1 cut(s) 400
PkrI GCNGC 7 cut(s) 49, 363, 411, 444, 447, 462, 506
PleI GAGTC 2 cut(s) 240, 462
PpsI GAGTC 2 cut(s) 240, 462
Ppu21I YACGTR 1 cut(s) 311
PscI ACATGT 1 cut(s) 343
PspPI GGNCC 3 cut(s) 204, 363, 440
RsaI GTAC 1 cut(s) 24
RsaNI GTAC 1 cut(s) 23
SaqAI TTAA 2 cut(s) 287, 483
SatI GCNGC 7 cut(s) 48, 362, 410, 443, 446, 461, 505
Sau3AI GATC 1 cut(s) 184
Sau96I GGNCC 3 cut(s) 204, 363, 440
SchI GAGTC 2 cut(s) 241, 463
SduI GDGCHC 1 cut(s) 141
SetI ASST 8 cut(s) 38, 260, 287, 313, 425, 489, 523, 567
SfaNI GCATC 2 cut(s) 107, 142
Sfr274I CTCGAG 1 cut(s) 29
SinI GGWCC 1 cut(s) 204
SlaI CTCGAG 1 cut(s) 29
SmlI CTYRAG 1 cut(s) 29
SmoI CTYRAG 1 cut(s) 29
Sse9I AATT 1 cut(s) 351
SsiI CCGC 8 cut(s) 47, 50, 361, 409, 443, 446, 471, 505
TaaI ACNGT 1 cut(s) 512
TaiI ACGT 2 cut(s) 313, 567
TaqI TCGA 6 cut(s) 30, 76, 172, 251, 297, 393
TasI AATT 1 cut(s) 351
TatI WGTACW 1 cut(s) 22
TauI GCSGC 6 cut(s) 50, 364, 412, 445, 448, 507
TfiI GAWTC 2 cut(s) 331, 356
Tru1I TTAA 2 cut(s) 287, 483
Tru9I TTAA 2 cut(s) 287, 483
TseFI GTSAC 2 cut(s) 346, 386
TseI GCWGC 1 cut(s) 460
Tsp45I GTSAC 2 cut(s) 346, 386
TspDTI ATGAA 1 cut(s) 530
VneI GTGCAC 1 cut(s) 137
VpaK11BI GGWCC 1 cut(s) 204
XceI RCATGY 1 cut(s) 347
XhoI CTCGAG 1 cut(s) 29
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.