Rroxscaffold_5G00354240

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
OG0014877
Physical Location & Seq
Reverse (-)
32714665 .. 32718577
3913 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00354240.1

Sequence Viewer

Length: 603 bp
ATGGCCGCATTTGGCAAAGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGGAATCGATGCTGAAAAAGTCATATCTCGAACATCTTTTGACCTTCAAGGACATAAATGGTCCGGTTCAGCGAATGCCCACTCGGGAGTCTTGTTCGCAATCTTTCGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGAAAATTTTGAAAAGGAGCTCAAGAAGCATACCGAGGAAGTCGCTTCTAGAGTTGAGGCTGTATTACAAAGAGCTGAAGAGCAAGGGCAAATGATTGAATCCCTTCACACCTCTGTAAGCCCTAGTGAATCCCTCTCGAAGAGCAAGCACTCATGTCATCTTGCTATGTTGGCATTACGTGCTGCAAAGGATGAGATTAAGAATTTGAAAGATGAAATGCAGGCTACTAAAGATCACATGCTACAGTATAAGAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGGACATGAAAACTTCAAGATTGAGGTACTGCTGCCTTACTTTAATTTTAGCGACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

200

Amino Acids

22.89

Weight (kDa)

5.87

Isoelectric Point (pI)

44.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 6
AcoI YGGCCR 1 cut(s) 3
AcsI RAATTY 3 cut(s) 253, 451, 542
AcuI CTGAAG 1 cut(s) 345
AfaI GTAC 1 cut(s) 573
AgsI TTSAA 9 cut(s) 34, 157, 227, 247, 260, 347, 457, 532, 562
AloI GAACNNNNNNTCC 2 cut(s) 227, 259
AluBI AGCT 5 cut(s) 55, 223, 268, 323, 509
AluI AGCT 5 cut(s) 55, 223, 268, 323, 509
Alw21I GWGCWC 2 cut(s) 108, 270
Alw44I GTGCAC 1 cut(s) 104
Ama87I CYCGRG 1 cut(s) 192
AoxI GGCC 1 cut(s) 3
ApaLI GTGCAC 1 cut(s) 104
ApeKI GCWGC 2 cut(s) 431, 577
ApoI RAATTY 3 cut(s) 253, 451, 542
ArsI GACNNNNNNTTYG 2 cut(s) 9, 41
Asp700I GAANNNNTTC 1 cut(s) 351
AspS9I GGNCC 1 cut(s) 170
AvaI CYCGRG 1 cut(s) 192
AvaII GGWCC 1 cut(s) 170
BaeGI GKGCMC 1 cut(s) 108
BanII GRGCYC 1 cut(s) 270
Bbv12I GWGCWC 2 cut(s) 108, 270
BbvI GCAGC 2 cut(s) 418, 564
BccI CCATC 1 cut(s) 532
BfaI CTAG 2 cut(s) 297, 372
BfmI CTRYAG 1 cut(s) 491
BisI GCNGC 3 cut(s) 6, 432, 578
BlsI GCNGC 3 cut(s) 7, 433, 579
Bme18I GGWCC 1 cut(s) 170
BmeT110I CYCGRG 1 cut(s) 192
BmgT120I GGNCC 1 cut(s) 170
BmsI GCATC 3 cut(s) 74, 108, 514
BplI GAGNNNNNCTC 2 cut(s) 493, 525
Bpu10I CCTNAGC 1 cut(s) 510
BpuEI CTTGAG 1 cut(s) 254
Bsa29I ATCGAT 1 cut(s) 116
BsaAI YACGTR 1 cut(s) 428
BsaJI CCNNGG 1 cut(s) 282
BsaWI WCCGGW 1 cut(s) 172
BseCI ATCGAT 1 cut(s) 116
BseDI CCNNGG 1 cut(s) 282
BseGI GGATG 2 cut(s) 445, 529
BseMII CTCAG 1 cut(s) 524
BseSI GKGCMC 1 cut(s) 108
BseXI GCAGC 2 cut(s) 418, 564
BshFI GGCC 1 cut(s) 5
BshVI ATCGAT 1 cut(s) 116
BsiHKAI GWGCWC 2 cut(s) 108, 270
BsiHKCI CYCGRG 1 cut(s) 192
BsiSI CCGG 1 cut(s) 173
BsmI GAATGC 1 cut(s) 189
BsnI GGCC 1 cut(s) 5
BsoBI CYCGRG 1 cut(s) 192
Bsp1286I GDGCHC 2 cut(s) 108, 270
Bsp143I GATC 1 cut(s) 481
BspACI CCGC 1 cut(s) 6
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 523
BspDI ATCGAT 1 cut(s) 116
BspHI TCATGA 1 cut(s) 76
BspQI GCTCTTC 2 cut(s) 321, 383
BssECI CCNNGG 1 cut(s) 282
BssMI GATC 1 cut(s) 481
Bst4CI ACNGT 1 cut(s) 495
Bst6I CTCTTC 2 cut(s) 321, 383
BstAPI GCANNNNNTGC 1 cut(s) 428
BstBAI YACGTR 1 cut(s) 428
BstC8I GCNNGC 2 cut(s) 395, 471
BstDEI CTNAG 1 cut(s) 510
BstF5I GGATG 2 cut(s) 445, 529
BstKTI GATC 1 cut(s) 484
BstMBI GATC 1 cut(s) 481
BstMWI GCNNNNNNNGC 3 cut(s) 274, 419, 428
BstNSI RCATGY 1 cut(s) 490
BstSFI CTRYAG 1 cut(s) 491
BstSLI GKGCMC 1 cut(s) 108
BstV1I GCAGC 2 cut(s) 418, 564
Bsu15I ATCGAT 1 cut(s) 116
BsuRI GGCC 1 cut(s) 5
BsuTUI ATCGAT 1 cut(s) 116
BtsCI GGATG 2 cut(s) 445, 529
Cac8I GCNNGC 2 cut(s) 395, 471
CciI TCATGA 1 cut(s) 76
Cfr13I GGNCC 1 cut(s) 170
ClaI ATCGAT 1 cut(s) 116
Csp6I GTAC 1 cut(s) 572
CviAII CATG 4 cut(s) 77, 402, 487, 551
CviJI RGCY 9 cut(s) 5, 55, 223, 268, 308, 323, 369, 473, 509
CviKI_1 RGCY 9 cut(s) 5, 55, 223, 268, 308, 323, 369, 473, 509
CviQI GTAC 1 cut(s) 572
DdeI CTNAG 1 cut(s) 510
DpnI GATC 1 cut(s) 483
DpnII GATC 1 cut(s) 481
EaeI YGGCCR 1 cut(s) 3
Eam1104I CTCTTC 2 cut(s) 321, 383
EarI CTCTTC 2 cut(s) 321, 383
Ecl136II GAGCTC 1 cut(s) 268
Eco24I GRGCYC 1 cut(s) 270
Eco47I GGWCC 1 cut(s) 170
Eco53kI GAGCTC 1 cut(s) 268
Eco57I CTGAAG 1 cut(s) 345
Eco88I CYCGRG 1 cut(s) 192
EcoICRI GAGCTC 1 cut(s) 268
EcoT22I ATGCAT 1 cut(s) 529
EcoT38I GRGCYC 1 cut(s) 270
FaeI CATG 4 cut(s) 80, 405, 490, 554
FatI CATG 4 cut(s) 76, 401, 486, 550
Fnu4HI GCNGC 3 cut(s) 6, 432, 578
FokI GGATG 2 cut(s) 452, 536
FriOI GRGCYC 1 cut(s) 270
Fsp4HI GCNGC 3 cut(s) 6, 432, 578
FspBI CTAG 2 cut(s) 297, 372
GluI GCNGC 3 cut(s) 6, 432, 578
HaeIII GGCC 1 cut(s) 5
HapII CCGG 1 cut(s) 173
Hin1II CATG 4 cut(s) 80, 405, 490, 554
HinfI GANTC 4 cut(s) 113, 197, 347, 377
HpaII CCGG 1 cut(s) 173
Hpy166II GTNNAC 1 cut(s) 106
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 8 cut(s) 44, 77, 137, 194, 271, 297, 385, 562
Hpy8I GTNNAC 1 cut(s) 106
HpyAV CCTTC 2 cut(s) 163, 362
HpyCH4III ACNGT 1 cut(s) 495
HpyCH4IV ACGT 1 cut(s) 427
HpyCH4V TGCA 5 cut(s) 65, 106, 434, 469, 527
HpyF10VI GCNNNNNNNGC 3 cut(s) 274, 419, 428
HpyF3I CTNAG 1 cut(s) 510
HpySE526I ACGT 1 cut(s) 427
Hsp92II CATG 4 cut(s) 80, 405, 490, 554
Kzo9I GATC 1 cut(s) 481
LguI GCTCTTC 2 cut(s) 321, 383
LmnI GCTCC 1 cut(s) 265
LpnPI CCDG 4 cut(s) 186, 233, 455, 497
Lsp1109I GCAGC 2 cut(s) 418, 564
LweI GCATC 3 cut(s) 74, 108, 514
MaeI CTAG 2 cut(s) 297, 372
MaeII ACGT 1 cut(s) 427
MalI GATC 1 cut(s) 483
MboI GATC 1 cut(s) 481
MboII GAAGA 3 cut(s) 60, 338, 400
MhlI GDGCHC 2 cut(s) 108, 270
MluCI AATT 4 cut(s) 253, 451, 542, 589
MlyI GAGTC 1 cut(s) 206
MnlI CCTC 6 cut(s) 277, 298, 370, 392, 514, 562
Mph1103I ATGCAT 1 cut(s) 529
MroXI GAANNNNTTC 1 cut(s) 351
MseI TTAA 2 cut(s) 447, 588
MspI CCGG 1 cut(s) 173
Mva1269I GAATGC 1 cut(s) 189
MwoI GCNNNNNNNGC 3 cut(s) 274, 419, 428
NdeII GATC 1 cut(s) 481
NlaIII CATG 4 cut(s) 80, 405, 490, 554
NsiI ATGCAT 1 cut(s) 529
NspI RCATGY 1 cut(s) 490
PagI TCATGA 1 cut(s) 76
PciSI GCTCTTC 2 cut(s) 321, 383
PctI GAATGC 1 cut(s) 189
PdmI GAANNNNTTC 1 cut(s) 351
PfeI GAWTC 3 cut(s) 113, 347, 377
PkrI GCNGC 3 cut(s) 7, 433, 579
PleI GAGTC 1 cut(s) 205
PpsI GAGTC 1 cut(s) 205
Ppu21I YACGTR 1 cut(s) 428
Psp124BI GAGCTC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 170
RsaI GTAC 1 cut(s) 573
RsaNI GTAC 1 cut(s) 572
SacI GAGCTC 1 cut(s) 270
SapI GCTCTTC 2 cut(s) 321, 383
SaqAI TTAA 2 cut(s) 447, 588
SatI GCNGC 3 cut(s) 6, 432, 578
Sau3AI GATC 1 cut(s) 481
Sau96I GGNCC 1 cut(s) 170
SchI GAGTC 1 cut(s) 206
SduI GDGCHC 2 cut(s) 108, 270
SfaNI GCATC 3 cut(s) 74, 108, 514
SfcI CTRYAG 1 cut(s) 491
SinI GGWCC 1 cut(s) 170
SmlI CTYRAG 1 cut(s) 269
SmoI CTYRAG 1 cut(s) 269
Sse9I AATT 4 cut(s) 253, 451, 542, 589
SsiI CCGC 1 cut(s) 6
SspMI CTAG 2 cut(s) 297, 372
SstI GAGCTC 1 cut(s) 270
TaaI ACNGT 1 cut(s) 495
TaiI ACGT 1 cut(s) 430
TaqI TCGA 5 cut(s) 43, 116, 138, 216, 386
TasI AATT 4 cut(s) 253, 451, 542, 589
TauI GCSGC 1 cut(s) 8
TfiI GAWTC 3 cut(s) 113, 347, 377
Tru1I TTAA 2 cut(s) 447, 588
Tru9I TTAA 2 cut(s) 447, 588
TseI GCWGC 2 cut(s) 431, 577
TspDTI ATGAA 2 cut(s) 477, 567
VneI GTGCAC 1 cut(s) 104
VpaK11BI GGWCC 1 cut(s) 170
XapI RAATTY 3 cut(s) 253, 451, 542
XbaI TCTAGA 1 cut(s) 296
XceI RCATGY 1 cut(s) 490
XmnI GAANNNNTTC 1 cut(s) 351
XspI CTAG 2 cut(s) 297, 372
Zsp2I ATGCAT 1 cut(s) 529
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.