Rh6DG091500

Nuclear-pore

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0014877
Physical Location & Seq
Forward (+)
10671116 .. 10702024
30909 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG091500.1

Sequence Viewer

Length: 876 bp
ATGGATCCACATCTGCTATCAAATGATAGAAAAATCATCCTAGGTTCTATCCACAATGACATGAAAAATTCACATGAAGTGGCAGTCCTTTTGAAAGAATGTCGAGATATACAGCTTCGTGGTGCATCTTCGGGTCATGATAGTTATGACAATGCTGTTGTGGTGCACTCGGAATCTGATACTGAAAAAGTCATATCTGAGCATCTTTTGACCTTCAAGGACATAAATGGTCTGGTTCAGCAGAATGCCCAGCTCAGGAGTCTTGTTCGCAATCTTTCTGACCAGCTTGAAAATAGGGAAAAGGAGTTCAAGGAAAATTTTGAAAAGGAGCTCAAGAAGCATACTGAGGAAGCTGCTTCTAGAGTTGAGGCTGTATTACAAAGAGCTGAAGAGCAAGGGCAAATGATTGAATCCCTTCACACTTCTGCTATGTTGGCATTACGTGCTGCAAAGGATGAGATTAAGAATTTGAAAGATGAAATGCAGGCTACTAAAGATCACATGCTACAGTATAAGAGTATAGCTCAGGTAAATGAGGATGCATTGAAACAGATGGAATTTGCACATGAAAACTTCAAGATTGAGAGTAAACTATACCCAAGATTGATTCAGGATGTGCAGCTCGTGATAAATGAGCTAGGAAATGTCACTGTTCTTTGTGAGGAGCTATGGCTCAGCACACTCCAAGATCTTCACACAGATGTGACGAGGCGCATAAATGTACTGAAGGAGGAAGCTGCACGAATTGCAGAAAATATTACTCTTAGCCATAGTGAGAAGAACAAGATAAATGCTGCTAAATACTCCGCTATATATGATGGCTCCTATTGTTGTGGCCTTAGAACGTCGTCTGTCTTCCACATCTCGGAAACCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000075 GO:0000278 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005635 GO:0005643 GO:0005730 GO:0005737 GO:0005829 GO:0005911 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006810 GO:0006886 GO:0006913 GO:0007049 GO:0007088 GO:0007093 GO:0007094 GO:0007275 GO:0007346 GO:0008104 GO:0008150 GO:0008152 GO:0009506 GO:0009507 GO:0009536 GO:0009791 GO:0009892 GO:0009908 GO:0009909 GO:0009910 GO:0009987 GO:0010467 GO:0010468 GO:0010564 GO:0010605 GO:0010639 GO:0010948 GO:0010965 GO:0012505 GO:0015031 GO:0015833 GO:0015931 GO:0016973 GO:0019222 GO:0022402 GO:0022414 GO:0030054 GO:0030071 GO:0031323 GO:0031324 GO:0031399 GO:0031400 GO:0031503 GO:0031577 GO:0031967 GO:0031974 GO:0031975 GO:0031981 GO:0032268 GO:0032269 GO:0032501 GO:0032502 GO:0032991 GO:0033036 GO:0033043 GO:0033044 GO:0033045 GO:0033046 GO:0033047 GO:0033048 GO:0033233 GO:0033234 GO:0034613 GO:0042886 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045184 GO:0045786 GO:0045839 GO:0045841 GO:0045930 GO:0046907 GO:0048367 GO:0048437 GO:0048438 GO:0048443 GO:0048466 GO:0048519 GO:0048523 GO:0048580 GO:0048581 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0050657 GO:0050658 GO:0050789 GO:0050793 GO:0050794 GO:0051028 GO:0051093 GO:0051128 GO:0051129 GO:0051168 GO:0051169 GO:0051171 GO:0051172 GO:0051179 GO:0051234 GO:0051236 GO:0051239 GO:0051241 GO:0051246 GO:0051248 GO:0051641 GO:0051649 GO:0051726 GO:0051783 GO:0051784 GO:0051983 GO:0051985 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0065007 GO:0070013 GO:0070727 GO:0071166 GO:0071173 GO:0071174 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0080090 GO:0090567 GO:0099402 GO:1901987 GO:1901988 GO:1901990 GO:1901991 GO:1902099 GO:1902100 GO:1903047 GO:1903320 GO:1903321 GO:1905818 GO:1905819 GO:2000026 GO:2000241 GO:2000242 GO:2000816 GO:2001251
KEGG Pathways
Metabolic & Signaling
ko03013 ko04144 ko05200 ko05216 map03013 map04144 map05200 map05216
Pfam Domains
Protein Families
TPR_MLP1_2

Protein Analysis

291

Amino Acids

33.19

Weight (kDa)

5.57

Isoelectric Point (pI)

40.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPR PF25785 24 - 101 7.4e-22 Nucleoprotein TPR-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 807
AclWI GGATC 1 cut(s) 12
AcsI RAATTY 4 cut(s) 67, 316, 466, 557
AcuI CTGAAG 2 cut(s) 408, 746
AfaI GTAC 1 cut(s) 723
AfiI CCNNNNNNNGG 2 cut(s) 255, 865
AgsI TTSAA 9 cut(s) 94, 217, 290, 310, 323, 410, 472, 547, 577
AleI CACNNNNGTG 1 cut(s) 701
AloI GAACNNNNNNTCC 2 cut(s) 290, 322
Alw21I GWGCWC 2 cut(s) 168, 333
Alw44I GTGCAC 1 cut(s) 164
AlwI GGATC 1 cut(s) 12
AoxI GGCC 1 cut(s) 835
ApaLI GTGCAC 1 cut(s) 164
ApeKI GCWGC 5 cut(s) 353, 446, 619, 737, 794
ApoI RAATTY 4 cut(s) 67, 316, 466, 557
Asp700I GAANNNNTTC 1 cut(s) 414
AspA2I CCTAGG 1 cut(s) 40
AspLEI GCGC 1 cut(s) 714
AvrII CCTAGG 1 cut(s) 40
BaeGI GKGCMC 1 cut(s) 168
BamHI GGATCC 1 cut(s) 4
BanII GRGCYC 1 cut(s) 333
BauI CACGAG 1 cut(s) 623
BbsI GAAGAC 1 cut(s) 847
Bbv12I GWGCWC 2 cut(s) 168, 333
BbvI GCAGC 5 cut(s) 340, 433, 631, 724, 781
BccI CCATC 2 cut(s) 547, 812
BfaI CTAG 3 cut(s) 41, 360, 638
BfmI CTRYAG 1 cut(s) 506
BglII AGATCT 1 cut(s) 688
BisI GCNGC 5 cut(s) 354, 447, 620, 738, 795
BlnI CCTAGG 1 cut(s) 40
BlpI GCTNAGC 1 cut(s) 674
BlsI GCNGC 5 cut(s) 355, 448, 621, 739, 796
BmiI GGNNCC 2 cut(s) 6, 823
BmsI GCATC 3 cut(s) 134, 211, 529
BpiI GAAGAC 1 cut(s) 847
BplI GAGNNNNNCTC 2 cut(s) 508, 540
Bpu10I CCTNAGC 2 cut(s) 254, 525
Bpu1102I GCTNAGC 1 cut(s) 674
BpuEI CTTGAG 1 cut(s) 317
BsaAI YACGTR 1 cut(s) 443
BsaBI GATNNNNATC 1 cut(s) 9
BsaJI CCNNGG 1 cut(s) 40
Bsc4I CCNNNNNNNGG 2 cut(s) 255, 865
Bse8I GATNNNNATC 1 cut(s) 9
BseDI CCNNGG 1 cut(s) 40
BseGI GGATG 4 cut(s) 36, 460, 544, 619
BseJI GATNNNNATC 1 cut(s) 9
BseLI CCNNNNNNNGG 2 cut(s) 255, 865
BseMII CTCAG 5 cut(s) 189, 268, 336, 539, 688
BseRI GAGGAG 1 cut(s) 677
BseSI GKGCMC 1 cut(s) 168
BseXI GCAGC 5 cut(s) 340, 433, 631, 724, 781
BseYI CCCAGC 1 cut(s) 249
BsgI GTGCAG 2 cut(s) 638, 723
BshFI GGCC 1 cut(s) 837
BsiHKAI GWGCWC 2 cut(s) 168, 333
BslI CCNNNNNNNGG 2 cut(s) 255, 865
BsmI GAATGC 1 cut(s) 250
BsnI GGCC 1 cut(s) 837
Bsp1286I GDGCHC 2 cut(s) 168, 333
Bsp143I GATC 3 cut(s) 4, 496, 688
Bsp1720I GCTNAGC 1 cut(s) 674
BspACI CCGC 1 cut(s) 807
BspANI GGCC 1 cut(s) 837
BspCNI CTCAG 5 cut(s) 190, 267, 337, 538, 687
BspHI TCATGA 1 cut(s) 136
BspLI GGNNCC 2 cut(s) 6, 823
BspPI GGATC 1 cut(s) 12
BspQI GCTCTTC 1 cut(s) 384
BssECI CCNNGG 1 cut(s) 40
BssMI GATC 3 cut(s) 4, 496, 688
BssSI CACGAG 1 cut(s) 623
BssT1I CCWWGG 1 cut(s) 40
Bst2BI CACGAG 1 cut(s) 623
Bst4CI ACNGT 2 cut(s) 510, 652
Bst6I CTCTTC 1 cut(s) 384
BstAPI GCANNNNNTGC 2 cut(s) 443, 746
BstBAI YACGTR 1 cut(s) 443
BstC8I GCNNGC 1 cut(s) 486
BstDEI CTNAG 7 cut(s) 198, 254, 345, 525, 674, 764, 839
BstF5I GGATG 4 cut(s) 36, 460, 544, 619
BstHHI GCGC 1 cut(s) 714
BstKTI GATC 3 cut(s) 7, 499, 691
BstMBI GATC 3 cut(s) 4, 496, 688
BstMWI GCNNNNNNNGC 4 cut(s) 337, 434, 443, 746
BstNSI RCATGY 1 cut(s) 505
BstSFI CTRYAG 1 cut(s) 506
BstSLI GKGCMC 1 cut(s) 168
BstV1I GCAGC 5 cut(s) 340, 433, 631, 724, 781
BstV2I GAAGAC 1 cut(s) 847
BstX2I RGATCY 2 cut(s) 4, 688
BstYI RGATCY 2 cut(s) 4, 688
BsuRI GGCC 1 cut(s) 837
BtsCI GGATG 4 cut(s) 36, 460, 544, 619
BtsIMutI CAGTG 1 cut(s) 648
Cac8I GCNNGC 1 cut(s) 486
CciI TCATGA 1 cut(s) 136
CfoI GCGC 1 cut(s) 714
Csp6I GTAC 1 cut(s) 722
CviAII CATG 5 cut(s) 61, 74, 137, 502, 566
CviQI GTAC 1 cut(s) 722
DdeI CTNAG 7 cut(s) 198, 254, 345, 525, 674, 764, 839
DpnI GATC 3 cut(s) 6, 498, 690
DpnII GATC 3 cut(s) 4, 496, 688
Eam1104I CTCTTC 1 cut(s) 384
EarI CTCTTC 1 cut(s) 384
Ecl136II GAGCTC 1 cut(s) 331
Eco130I CCWWGG 1 cut(s) 40
Eco24I GRGCYC 1 cut(s) 333
Eco53kI GAGCTC 1 cut(s) 331
Eco57I CTGAAG 2 cut(s) 408, 746
EcoICRI GAGCTC 1 cut(s) 331
EcoT14I CCWWGG 1 cut(s) 40
EcoT22I ATGCAT 1 cut(s) 544
EcoT38I GRGCYC 1 cut(s) 333
ErhI CCWWGG 1 cut(s) 40
FaeI CATG 5 cut(s) 64, 77, 140, 505, 569
FatI CATG 5 cut(s) 60, 73, 136, 501, 565
Fnu4HI GCNGC 5 cut(s) 354, 447, 620, 738, 795
FokI GGATG 4 cut(s) 23, 467, 551, 626
FriOI GRGCYC 1 cut(s) 333
Fsp4HI GCNGC 5 cut(s) 354, 447, 620, 738, 795
FspBI CTAG 3 cut(s) 41, 360, 638
GlaI GCGC 1 cut(s) 713
GluI GCNGC 5 cut(s) 354, 447, 620, 738, 795
GsaI CCCAGC 1 cut(s) 253
HaeIII GGCC 1 cut(s) 837
HhaI GCGC 1 cut(s) 714
Hin1II CATG 5 cut(s) 64, 77, 140, 505, 569
Hin6I GCGC 1 cut(s) 712
HinP1I GCGC 1 cut(s) 712
HinfI GANTC 4 cut(s) 173, 259, 410, 607
Hpy166II GTNNAC 2 cut(s) 166, 590
Hpy188I TCNGA 5 cut(s) 172, 178, 199, 280, 868
Hpy188III TCNNGA 8 cut(s) 104, 137, 256, 334, 360, 577, 611, 625
Hpy8I GTNNAC 2 cut(s) 166, 590
Hpy99I CGWCG 1 cut(s) 850
HpyAV CCTTC 3 cut(s) 223, 425, 721
HpyCH4III ACNGT 2 cut(s) 510, 652
HpyCH4IV ACGT 2 cut(s) 442, 845
HpyCH4V TGCA 9 cut(s) 125, 166, 449, 484, 542, 563, 619, 740, 749
HpyF10VI GCNNNNNNNGC 4 cut(s) 337, 434, 443, 746
HpyF3I CTNAG 7 cut(s) 198, 254, 345, 525, 674, 764, 839
HpySE526I ACGT 2 cut(s) 442, 845
Hsp92II CATG 5 cut(s) 64, 77, 140, 505, 569
HspAI GCGC 1 cut(s) 712
Kzo9I GATC 3 cut(s) 4, 496, 688
LguI GCTCTTC 1 cut(s) 384
LmnI GCTCC 3 cut(s) 328, 664, 827
LpnPI CCDG 7 cut(s) 218, 241, 263, 296, 470, 512, 596
Lsp1109I GCAGC 5 cut(s) 340, 433, 631, 724, 781
LweI GCATC 3 cut(s) 134, 211, 529
MaeI CTAG 3 cut(s) 41, 360, 638
MaeII ACGT 2 cut(s) 442, 845
MaeIII GTNAC 2 cut(s) 646, 703
MalI GATC 3 cut(s) 6, 498, 690
MboI GATC 3 cut(s) 4, 496, 688
MboII GAAGA 5 cut(s) 120, 401, 683, 790, 847
MflI RGATCY 2 cut(s) 4, 688
MhlI GDGCHC 2 cut(s) 168, 333
MluCI AATT 5 cut(s) 67, 316, 466, 557, 744
MlyI GAGTC 1 cut(s) 268
MnlI CCTC 6 cut(s) 340, 361, 529, 655, 702, 724
Mph1103I ATGCAT 1 cut(s) 544
MroXI GAANNNNTTC 1 cut(s) 414
MseI TTAA 1 cut(s) 462
MslI CAYNNNNRTG 2 cut(s) 699, 701
Mva1269I GAATGC 1 cut(s) 250
MwoI GCNNNNNNNGC 4 cut(s) 337, 434, 443, 746
NdeII GATC 3 cut(s) 4, 496, 688
NlaIII CATG 5 cut(s) 64, 77, 140, 505, 569
NlaIV GGNNCC 2 cut(s) 6, 823
NmuCI GTSAC 2 cut(s) 646, 703
NsiI ATGCAT 1 cut(s) 544
NspI RCATGY 1 cut(s) 505
OliI CACNNNNGTG 1 cut(s) 701
PagI TCATGA 1 cut(s) 136
PciSI GCTCTTC 1 cut(s) 384
PctI GAATGC 1 cut(s) 250
PdmI GAANNNNTTC 1 cut(s) 414
PfeI GAWTC 3 cut(s) 173, 410, 607
PkrI GCNGC 5 cut(s) 355, 448, 621, 739, 796
PleI GAGTC 1 cut(s) 267
PpsI GAGTC 1 cut(s) 267
Ppu21I YACGTR 1 cut(s) 443
Psp124BI GAGCTC 1 cut(s) 333
PspFI CCCAGC 1 cut(s) 249
PspN4I GGNNCC 2 cut(s) 6, 823
PsuI RGATCY 2 cut(s) 4, 688
RsaI GTAC 1 cut(s) 723
RsaNI GTAC 1 cut(s) 722
RseI CAYNNNNRTG 2 cut(s) 699, 701
SacI GAGCTC 1 cut(s) 333
SapI GCTCTTC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 462
SatI GCNGC 5 cut(s) 354, 447, 620, 738, 795
Sau3AI GATC 3 cut(s) 4, 496, 688
SchI GAGTC 1 cut(s) 268
SduI GDGCHC 2 cut(s) 168, 333
SfaNI GCATC 3 cut(s) 134, 211, 529
SfcI CTRYAG 1 cut(s) 506
SmiMI CAYNNNNRTG 2 cut(s) 699, 701
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
Sse9I AATT 5 cut(s) 67, 316, 466, 557, 744
SsiI CCGC 1 cut(s) 807
SspI AATATT 1 cut(s) 757
SspMI CTAG 3 cut(s) 41, 360, 638
SstI GAGCTC 1 cut(s) 333
StyI CCWWGG 1 cut(s) 40
TaaI ACNGT 2 cut(s) 510, 652
TaiI ACGT 2 cut(s) 445, 848
TaqI TCGA 1 cut(s) 103
TasI AATT 5 cut(s) 67, 316, 466, 557, 744
TatI WGTACW 1 cut(s) 721
TfiI GAWTC 3 cut(s) 173, 410, 607
Tru1I TTAA 1 cut(s) 462
Tru9I TTAA 1 cut(s) 462
TscAI CASTG 1 cut(s) 655
TseFI GTSAC 2 cut(s) 646, 703
TseI GCWGC 5 cut(s) 353, 446, 619, 737, 794
Tsp45I GTSAC 2 cut(s) 646, 703
TspDTI ATGAA 4 cut(s) 77, 90, 492, 582
TspRI CASTG 1 cut(s) 655
VneI GTGCAC 1 cut(s) 164
XapI RAATTY 4 cut(s) 67, 316, 466, 557
XbaI TCTAGA 1 cut(s) 359
XceI RCATGY 1 cut(s) 505
XmaJI CCTAGG 1 cut(s) 40
XmnI GAANNNNTTC 1 cut(s) 414
XspI CTAG 3 cut(s) 41, 360, 638
Zsp2I ATGCAT 1 cut(s) 544
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.