Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003683.1

Orthogroup ID

OG0003604

Physical Location & Seq

Genomic Coordinates Forward (+)

3631 .. 8095

Gene Structure 4465 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

atgttcatatcaccttccttgttgacctcttttgtctcctccaaggactttctcttcttctgtctcttccttgtagatgacttggaaggaaaatcttcagattccacctcagcgccatctgtgacgacaacctttggatcttcacccttcaagtcatcaggctgtggaatgaaaataagggctgatgatcctcttgcgatgaaaattttttttgcgagtgttcagaataaagtgaatgagttaaaagcctcatgtggagatgaccaggagaagatcaatggcaaaaggatggggttcatgcttgaaaccatatgtgacatcaagaacaacaagaaaaggcctaaagaagatactgcacctcatacaaggataaagaaatggctacaaaagttacgggaggaagacattttaataagaggactcaattggagcaaacttcttgatcctaataagaagggccagtggtggtcatctggggatattgattcaacagcttcaacactcgctgctggacagagaatgaacaaagatgctagaaaggcaattttttgtataattatgagcggggaggattacgttgatgcatttgagaatcttttgagattggatttacatggaaagcaggagaaagtgtttaacaagtattacacaattctggcttccaaattgtgcgagcatgacaaaaatcacaagttcacattacagttttgcctttgggaccacttcaaacagctggactcaatgcagctgaataggtcattacacctagccaaatttgttgcagagatggtagcctctatcaccctctcccttgcggtactgaagactgtaaatctagctgacatcaagcaactaactgcaaaaaggacaatgtatttccggatgttatttgaggccatctttgagtatccagatagccttgtatggaatatattcacgcgagtagctgtcaccccggagcttgaaagtcttcgacatgggatcgaattttttatcgagtatattgtggaaaccaataaatccctcagtgaaaagtttaagcttgcaaagaaagccctgaataatgctgaaggggtcctcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000151 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005677 GO:0005737 GO:0006139 GO:0006323 GO:0006325 GO:0006333 GO:0006338 GO:0006349 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009555 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009909 GO:0009987 GO:0010026 GO:0010154 GO:0010214 GO:0010468 GO:0016043 GO:0017053 GO:0019219 GO:0019222 GO:0022414 GO:0022607 GO:0030154 GO:0031323 GO:0031461 GO:0031497 GO:0031507 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0032991 GO:0034641 GO:0040029 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044085 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0045787 GO:0046483 GO:0048229 GO:0048316 GO:0048366 GO:0048367 GO:0048518 GO:0048522 GO:0048580 GO:0048608 GO:0048731 GO:0048827 GO:0048831 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051171 GO:0051239 GO:0051276 GO:0051726 GO:0060255 GO:0061458 GO:0065007 GO:0070013 GO:0070828 GO:0071103 GO:0071514 GO:0071704 GO:0071840 GO:0080008 GO:0080090 GO:0090558 GO:0090568 GO:0099402 GO:1901360 GO:1902494 GO:1990234 GO:2000026 GO:2000241 GO:2000653

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MA3 MIF4G

Protein Analysis

361

Amino Acids

41.22

Weight (kDa)

8.88

Isoelectric Point (pI)

39.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MA3	PF02847	179 - 266	3.7e-09	MA3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003604)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G17930
fragaria_vesca	FvH4_2g11600 FvH4_2g11600 FvH4_2g11600 FvH4_2g11600
malus_domestica	MD12G1008000.v1.1
prunus_persica	Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1 Prupe.1G541500_v2.0.a1
pyrus_communis	pycom12g00600
rosa_chinensis	RchiOBHm_Chr5g0003011 RchiOBHm_Chr5g0003131 RchiOBHm_Chr6g0270841
rosa_laevigata	RLG00000013766 RLG00000029740 RLG00000030769
rosa_multiflora	Rmu_co8456101.1_g000001 Rmu_sc0000642.1_g000028 Rmu_sc0003683.1_g000002 Rmu_sc0005956.1_g000006
rosa_roxburghii	Rroxscaffold_7G00197590
rosa_rugosa	Rorug06G0056700 Rorug06G0056800
rosa_samantha	Rh1BG088600 Rh1DG121800 Rh6AG176100 Rh6BG179300 Rh6CG175500 Rh6DG167800
rosa_wichuraiana	Rw1G009430 Rw6G015000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	564
AccII	CGCG	1 cut(s)	940
AccIII	TCCGGA	1 cut(s)	879
AciI	CCGC	2 cut(s)	564, 815
AclWI	GGATC	4 cut(s)	145, 182, 437, 989
AcsI	RAATTY	3 cut(s)	204, 773, 986
AcuI	CTGAAG	2 cut(s)	81, 842
AfaI	GTAC	1 cut(s)	819
AgsI	TTSAA	6 cut(s)	151, 305, 489, 498, 727, 965
AjnI	CCWGG	1 cut(s)	264
AluBI	AGCT	7 cut(s)	494, 733, 748, 839, 947, 961, 1042
AluI	AGCT	7 cut(s)	494, 733, 748, 839, 947, 961, 1042
Alw26I	GTCTC	2 cut(s)	40, 68
AlwI	GGATC	4 cut(s)	145, 182, 437, 989
Aor13HI	TCCGGA	1 cut(s)	879
AoxI	GGCC	3 cut(s)	338, 457, 894
ApeKI	GCWGC	2 cut(s)	506, 745
ApoI	RAATTY	3 cut(s)	204, 773, 986
Asp700I	GAANNNNTTC	3 cut(s)	94, 932, 969
AspLEI	GCGC	1 cut(s)	115
AspS9I	GGNCC	3 cut(s)	457, 718, 1075
AsuC2I	CCSGG	1 cut(s)	956
AsuHPI	GGTGA	4 cut(s)	3, 135, 793, 943
AvaII	GGWCC	2 cut(s)	718, 1075
BbsI	GAAGAC	3 cut(s)	408, 830, 962
BbvCI	CCTCAGC	1 cut(s)	109
BbvI	GCAGC	2 cut(s)	493, 757
BccI	CCATC	4 cut(s)	124, 283, 781, 905
BciT130I	CCWGG	1 cut(s)	266
BciVI	GTATCC	1 cut(s)	918
BcnI	CCSGG	1 cut(s)	956
BcoDI	GTCTC	2 cut(s)	40, 68
BfaI	CTAG	3 cut(s)	534, 767, 836
BfoI	RGCGCY	1 cut(s)	116
BfuI	GTATCC	1 cut(s)	918
BisI	GCNGC	2 cut(s)	507, 746
BlsI	GCNGC	2 cut(s)	508, 747
Bme1390I	CCNGG	2 cut(s)	266, 956
Bme18I	GGWCC	2 cut(s)	718, 1075
BmgT120I	GGNCC	3 cut(s)	457, 718, 1075
BmiI	GGNNCC	2 cut(s)	719, 1076
BmrFI	CCNGG	2 cut(s)	266, 956
BmsI	GCATC	2 cut(s)	520, 571
BpiI	GAAGAC	3 cut(s)	408, 830, 962
Bpu10I	CCTNAGC	1 cut(s)	109
BpuMI	CCSGG	1 cut(s)	956
BsaJI	CCNNGG	2 cut(s)	42, 954
BsaWI	WCCGGW	1 cut(s)	879
BsaXI	ACNNNNNCTCC	2 cut(s)	617, 647
Bse1I	ACTGG	1 cut(s)	460
BseAI	TCCGGA	1 cut(s)	879
BseBI	CCWGG	1 cut(s)	266
BseDI	CCNNGG	2 cut(s)	42, 954
BseGI	GGATG	2 cut(s)	294, 888
BseMII	CTCAG	2 cut(s)	123, 1039
BseNI	ACTGG	1 cut(s)	460
BseRI	GAGGAG	1 cut(s)	28
BseXI	GCAGC	2 cut(s)	493, 757
BsgI	GTGCAG	1 cut(s)	339
Bsh1236I	CGCG	1 cut(s)	940
BshFI	GGCC	3 cut(s)	340, 459, 896
BsiSI	CCGG	2 cut(s)	880, 956
BslFI	GGGAC	1 cut(s)	731
BsmAI	GTCTC	2 cut(s)	40, 68
BsmFI	GGGAC	1 cut(s)	731
BsnI	GGCC	3 cut(s)	340, 459, 896
Bsp13I	TCCGGA	1 cut(s)	879
Bsp143I	GATC	5 cut(s)	137, 187, 273, 442, 981
BspACI	CCGC	2 cut(s)	564, 815
BspANI	GGCC	3 cut(s)	340, 459, 896
BspCNI	CTCAG	2 cut(s)	122, 1038
BspEI	TCCGGA	1 cut(s)	879
BspFNI	CGCG	1 cut(s)	940
BspLI	GGNNCC	2 cut(s)	719, 1076
BspPI	GGATC	4 cut(s)	145, 182, 437, 989
BsrBI	CCGCTC	1 cut(s)	564
BsrI	ACTGG	1 cut(s)	460
BssECI	CCNNGG	2 cut(s)	42, 954
BssMI	GATC	5 cut(s)	137, 187, 273, 442, 981
BssT1I	CCWWGG	1 cut(s)	42
Bst2UI	CCWGG	1 cut(s)	266
Bst4CI	ACNGT	2 cut(s)	705, 829
Bst6I	CTCTTC	2 cut(s)	59, 71
BstC8I	GCNNGC	2 cut(s)	674, 1044
BstDEI	CTNAG	2 cut(s)	109, 1025
BstF5I	GGATG	2 cut(s)	294, 888
BstFNI	CGCG	1 cut(s)	940
BstH2I	RGCGCY	1 cut(s)	116
BstHHI	GCGC	1 cut(s)	115
BstKTI	GATC	5 cut(s)	140, 190, 276, 445, 984
BstMAI	GTCTC	2 cut(s)	40, 68
BstMBI	GATC	5 cut(s)	137, 187, 273, 442, 981
BstMWI	GCNNNNNNNGC	2 cut(s)	539, 1052
BstNI	CCWGG	1 cut(s)	266
BstSCI	CCNGG	2 cut(s)	264, 954
BstUI	CGCG	1 cut(s)	940
BstV1I	GCAGC	2 cut(s)	493, 757
BstV2I	GAAGAC	3 cut(s)	408, 830, 962
BstX2I	RGATCY	1 cut(s)	137
BstYI	RGATCY	1 cut(s)	137
BsuI	GTATCC	1 cut(s)	918
BsuRI	GGCC	3 cut(s)	340, 459, 896
BtgZI	GCGATG	1 cut(s)	212
BtsCI	GGATG	2 cut(s)	294, 888
BtsIMutI	CAGTG	2 cut(s)	467, 1033
Cac8I	GCNNGC	2 cut(s)	674, 1044
CfoI	GCGC	1 cut(s)	115
Cfr13I	GGNCC	3 cut(s)	457, 718, 1075
Csp6I	GTAC	1 cut(s)	818
CviAII	CATG	6 cut(s)	252, 298, 614, 677, 977, 1081
CviQI	GTAC	1 cut(s)	818
DdeI	CTNAG	2 cut(s)	109, 1025
DpnI	GATC	5 cut(s)	139, 189, 275, 444, 983
DpnII	GATC	5 cut(s)	137, 187, 273, 442, 981
Eam1104I	CTCTTC	2 cut(s)	59, 71
EarI	CTCTTC	2 cut(s)	59, 71
Eco130I	CCWWGG	1 cut(s)	42
Eco147I	AGGCCT	1 cut(s)	340
Eco47I	GGWCC	2 cut(s)	718, 1075
Eco57I	CTGAAG	2 cut(s)	81, 842
EcoO109I	RGGNCCY	1 cut(s)	1075
EcoRII	CCWGG	1 cut(s)	264
EcoT14I	CCWWGG	1 cut(s)	42
EcoT22I	ATGCAT	1 cut(s)	586
ErhI	CCWWGG	1 cut(s)	42
FaeI	CATG	6 cut(s)	255, 301, 617, 680, 980, 1084
FaqI	GGGAC	1 cut(s)	731
FatI	CATG	6 cut(s)	251, 297, 613, 676, 976, 1080
FauI	CCCGC	1 cut(s)	557
FauNDI	CATATG	1 cut(s)	311
Fnu4HI	GCNGC	2 cut(s)	507, 746
FokI	GGATG	2 cut(s)	301, 895
Fsp4HI	GCNGC	2 cut(s)	507, 746
FspBI	CTAG	3 cut(s)	534, 767, 836
GlaI	GCGC	1 cut(s)	114
GluI	GCNGC	2 cut(s)	507, 746
HaeII	RGCGCY	1 cut(s)	116
HaeIII	GGCC	3 cut(s)	340, 459, 896
HapII	CCGG	2 cut(s)	880, 956
HhaI	GCGC	1 cut(s)	115
Hin1II	CATG	6 cut(s)	255, 301, 617, 680, 980, 1084
Hin6I	GCGC	1 cut(s)	113
HinP1I	GCGC	1 cut(s)	113
HincII	GTYRAC	1 cut(s)	24
HindII	GTYRAC	1 cut(s)	24
HindIII	AAGCTT	1 cut(s)	1040
HinfI	GANTC	5 cut(s)	101, 420, 485, 592, 737
HpaII	CCGG	2 cut(s)	880, 956
HphI	GGTGA	4 cut(s)	3, 135, 793, 943
Hpy166II	GTNNAC	2 cut(s)	24, 696
Hpy188I	TCNGA	2 cut(s)	100, 225
Hpy188III	TCNNGA	4 cut(s)	322, 440, 880, 911
Hpy8I	GTNNAC	2 cut(s)	24, 696
HpyAV	CCTTC	5 cut(s)	24, 80, 157, 448, 1064
HpyCH4III	ACNGT	2 cut(s)	705, 829
HpyCH4IV	ACGT	1 cut(s)	576
HpyCH4V	TGCA	6 cut(s)	356, 584, 745, 782, 860, 1046
HpyF10VI	GCNNNNNNNGC	2 cut(s)	539, 1052
HpyF3I	CTNAG	2 cut(s)	109, 1025
HpySE526I	ACGT	1 cut(s)	576
Hsp92II	CATG	6 cut(s)	255, 301, 617, 680, 980, 1084
HspAI	GCGC	1 cut(s)	113
Kpn2I	TCCGGA	1 cut(s)	879
Kzo9I	GATC	5 cut(s)	137, 187, 273, 442, 981
LmnI	GCTCC	2 cut(s)	429, 958
Lsp1109I	GCAGC	2 cut(s)	493, 757
LweI	GCATC	2 cut(s)	520, 571
MaeI	CTAG	3 cut(s)	534, 767, 836
MaeII	ACGT	1 cut(s)	576
MaeIII	GTNAC	4 cut(s)	121, 314, 390, 949
MalI	GATC	5 cut(s)	139, 189, 275, 444, 983
MbiI	CCGCTC	1 cut(s)	564
MboI	GATC	5 cut(s)	137, 187, 273, 442, 981
MfeI	CAATTG	1 cut(s)	424
MflI	RGATCY	1 cut(s)	137
MluCI	AATT	8 cut(s)	204, 424, 543, 555, 651, 665, 773, 986
MlyI	GAGTC	2 cut(s)	414, 731
Mph1103I	ATGCAT	1 cut(s)	586
MroI	TCCGGA	1 cut(s)	879
MroXI	GAANNNNTTC	3 cut(s)	94, 932, 969
MseI	TTAA	4 cut(s)	242, 410, 636, 1038
MspA1I	CMGCKG	2 cut(s)	733, 748
MspI	CCGG	2 cut(s)	880, 956
MspR9I	CCNGG	2 cut(s)	266, 956
MunI	CAATTG	1 cut(s)	424
MvaI	CCWGG	1 cut(s)	266
MvnI	CGCG	1 cut(s)	940
MwoI	GCNNNNNNNGC	2 cut(s)	539, 1052
NciI	CCSGG	1 cut(s)	956
NdeI	CATATG	1 cut(s)	311
NdeII	GATC	5 cut(s)	137, 187, 273, 442, 981
NlaIII	CATG	6 cut(s)	255, 301, 617, 680, 980, 1084
NlaIV	GGNNCC	2 cut(s)	719, 1076
NmuCI	GTSAC	3 cut(s)	121, 314, 949
NsiI	ATGCAT	1 cut(s)	586
PceI	AGGCCT	1 cut(s)	340
PdmI	GAANNNNTTC	3 cut(s)	94, 932, 969
PfeI	GAWTC	3 cut(s)	101, 485, 592
PkrI	GCNGC	2 cut(s)	508, 747
PleI	GAGTC	2 cut(s)	414, 731
PpsI	GAGTC	2 cut(s)	414, 731
PpuMI	RGGWCCY	1 cut(s)	1075
Psp5II	RGGWCCY	1 cut(s)	1075
Psp6I	CCWGG	1 cut(s)	264
PspGI	CCWGG	1 cut(s)	264
PspN4I	GGNNCC	2 cut(s)	719, 1076
PspPI	GGNCC	3 cut(s)	457, 718, 1075
PspPPI	RGGWCCY	1 cut(s)	1075
PsuI	RGATCY	1 cut(s)	137
PvuII	CAGCTG	2 cut(s)	733, 748
RsaI	GTAC	1 cut(s)	819
RsaNI	GTAC	1 cut(s)	818
SaqAI	TTAA	4 cut(s)	242, 410, 636, 1038
SatI	GCNGC	2 cut(s)	507, 746
Sau3AI	GATC	5 cut(s)	137, 187, 273, 442, 981
Sau96I	GGNCC	3 cut(s)	457, 718, 1075
SchI	GAGTC	2 cut(s)	414, 731
ScrFI	CCNGG	2 cut(s)	266, 956
SfaNI	GCATC	2 cut(s)	520, 571
SinI	GGWCC	2 cut(s)	718, 1075
Sse9I	AATT	8 cut(s)	204, 424, 543, 555, 651, 665, 773, 986
SseBI	AGGCCT	1 cut(s)	340
SsiI	CCGC	2 cut(s)	564, 815
SspMI	CTAG	3 cut(s)	534, 767, 836
StuI	AGGCCT	1 cut(s)	340
StyD4I	CCNGG	2 cut(s)	264, 954
StyI	CCWWGG	1 cut(s)	42
TaaI	ACNGT	2 cut(s)	705, 829
TaiI	ACGT	1 cut(s)	579
TaqI	TCGA	3 cut(s)	973, 984, 996
TasI	AATT	8 cut(s)	204, 424, 543, 555, 651, 665, 773, 986
TfiI	GAWTC	3 cut(s)	101, 485, 592
Tru1I	TTAA	4 cut(s)	242, 410, 636, 1038
Tru9I	TTAA	4 cut(s)	242, 410, 636, 1038
TscAI	CASTG	2 cut(s)	467, 1033
TseFI	GTSAC	3 cut(s)	121, 314, 949
TseI	GCWGC	2 cut(s)	506, 745
Tsp45I	GTSAC	3 cut(s)	121, 314, 949
TspDTI	ATGAA	4 cut(s)	185, 215, 286, 536
TspRI	CASTG	2 cut(s)	467, 1033
VpaK11BI	GGWCC	2 cut(s)	718, 1075
XapI	RAATTY	3 cut(s)	204, 773, 986
XmnI	GAANNNNTTC	3 cut(s)	94, 932, 969
XspI	CTAG	3 cut(s)	534, 767, 836
Zsp2I	ATGCAT	1 cut(s)	586

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.