Rmu_sc0004335.1_g000006

NADH kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004335.1
OG0000832
Physical Location & Seq
Reverse (-)
28027 .. 32039
4013 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004335.1_g000006.1.cds

Sequence Viewer

Length: 909 bp
atgcaacatacgtcctcattttctctttccagatggttgagagagcagaaaaagttagatatttatgtggagccacgtgtgagagttgaacttgtgacagagtcatcatactacaacttcgtccagacatggaaagaagacactgagattatgctcctgcatacaaaagttgaccttgtggtaactcttggtggggatggaactgtcctctgggcggcatccatgttcaaaggaccagttcctcctgttgtgccattttctttaggatctctgggatttatgactccatttcacagtgaacggtaccgggagtatcttgattcacttttaaaaggtcccattagtatcacgctacggcaccggttgcagtgccatgttattagagaatcagctaaaaatgagtatgaaactgaagggccaatacttgttttaaatgaggttacaattgaccgtgggatatcatcatatctcacaaatttggaatgctattgtgacaactcttttgtcacatgcgtccaaggagatgggctgatattatccacaacatctggcagtactgcgtattcattagcagctggaggatcaatggtccatccccaggttccaggcatcctctttacccctatttgtcctcattccctatcattccggcctctgatattacctgagtatgtgacattgcgagtacaagtaccttttaacagcagaagccatgcatgggcatcatttgatgggaaggacaggaaacggctggcagctggtgatgcactcgtgtgcagtttggctacttggcccgtccccactgcatgtcaagttgattcaactagtgatttcttaactagcattcatgatggcctgcactggaatctgagaaagactcaatcttatgatggccctcgggatatataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00760 ko01100 map00760 map01100
Pfam Domains
Protein Families
NAD_kinase

Protein Analysis

302

Amino Acids

33.8

Weight (kDa)

6.2

Isoelectric Point (pI)

39.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21070 AT3G21070 AT3G21070 AT3G21070
fragaria_vesca FvH4_3g28510
malus_domestica MD03G1172500.v1.1 MD11G1190400.v1.1
prunus_persica Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1
pyrus_communis pycom03g12970 pycom11g16670
rosa_chinensis RchiOBHm_Chr5g0052801
rosa_laevigata RLG00000034795
rosa_multiflora Rmu_sc0004335.1_g000006 Rmu_sc0032421.1_g000001 Rmu_ssc0000311.1_g000025
rosa_roxburghii Rroxscaffold_1G00028620 Rroxscaffold_4G00318540
rosa_rugosa Rorug05G0269700 Rorug05G0269800
rosa_samantha Rh5AG341600 Rh5BG352300 Rh5CG379000 Rh5DG368700
rosa_wichuraiana Rw5G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 303
AccB1I GGYRCC 2 cut(s) 303, 357
AciI CCGC 1 cut(s) 215
AclWI GGATC 2 cut(s) 274, 589
AcsI RAATTY 1 cut(s) 475
AcuI CTGAAG 1 cut(s) 432
AcvI CACGTG 1 cut(s) 77
AfaI GTAC 4 cut(s) 305, 556, 687, 693
AfiI CCNNNNNNNGG 3 cut(s) 214, 598, 718
AflIII ACRYGT 1 cut(s) 76
AgeI ACCGGT 1 cut(s) 360
AgsI TTSAA 3 cut(s) 89, 229, 822
AhlI ACTAGT 1 cut(s) 824
AjnI CCWGG 2 cut(s) 597, 604
AleI CACNNNNGTG 1 cut(s) 772
AluBI AGCT 3 cut(s) 392, 575, 758
AluI AGCT 3 cut(s) 392, 575, 758
AlwI GGATC 2 cut(s) 274, 589
Ama87I CYCGRG 1 cut(s) 897
AoxI GGCC 5 cut(s) 416, 650, 791, 853, 892
ApeKI GCWGC 2 cut(s) 572, 755
ApoI RAATTY 1 cut(s) 475
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AsiGI ACCGGT 1 cut(s) 360
Asp718I GGTACC 1 cut(s) 303
AspS9I GGNCC 6 cut(s) 233, 335, 416, 589, 792, 893
AsuC2I CCSGG 1 cut(s) 308
AsuHPI GGTGA 1 cut(s) 773
AvaI CYCGRG 1 cut(s) 897
AvaII GGWCC 3 cut(s) 233, 335, 589
BanI GGYRCC 2 cut(s) 303, 357
BarI GAAGNNNNNNTAC 2 cut(s) 405, 437
BauI CACGAG 1 cut(s) 770
BbrPI CACGTG 1 cut(s) 77
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 2 cut(s) 584, 767
BccI CCATC 7 cut(s) 27, 191, 518, 600, 725, 845, 884
BceAI ACGGC 2 cut(s) 371, 764
BciT130I CCWGG 2 cut(s) 599, 606
BcnI CCSGG 1 cut(s) 308
BcuI ACTAGT 1 cut(s) 824
BfaI CTAG 2 cut(s) 825, 840
BisI GCNGC 3 cut(s) 216, 573, 756
BlsI GCNGC 3 cut(s) 217, 574, 757
BmcAI AGTACT 1 cut(s) 556
Bme1390I CCNGG 3 cut(s) 308, 599, 606
Bme18I GGWCC 3 cut(s) 233, 335, 589
BmeT110I CYCGRG 1 cut(s) 897
BmgT120I GGNCC 6 cut(s) 233, 335, 416, 589, 792, 893
BmiI GGNNCC 5 cut(s) 72, 305, 337, 359, 603
BmrFI CCNGG 3 cut(s) 308, 599, 606
BmsI GCATC 4 cut(s) 227, 618, 731, 754
BpiI GAAGAC 1 cut(s) 144
BplI GAGNNNNNCTC 2 cut(s) 862, 894
BpmI CTGGAG 1 cut(s) 597
BpuMI CCSGG 1 cut(s) 308
BsaAI YACGTR 1 cut(s) 77
BsaJI CCNNGG 4 cut(s) 451, 517, 597, 896
BsaWI WCCGGW 1 cut(s) 360
Bsc4I CCNNNNNNNGG 3 cut(s) 214, 598, 718
Bse118I RCCGGY 1 cut(s) 360
Bse1I ACTGG 2 cut(s) 236, 866
Bse3DI GCAATG 1 cut(s) 677
BseBI CCWGG 2 cut(s) 599, 606
BseDI CCNNGG 4 cut(s) 451, 517, 597, 896
BseGI GGATG 4 cut(s) 202, 218, 592, 609
BseLI CCNNNNNNNGG 3 cut(s) 214, 598, 718
BseMI GCAATG 1 cut(s) 677
BseMII CTCAG 3 cut(s) 135, 657, 860
BseNI ACTGG 2 cut(s) 236, 866
BseXI GCAGC 2 cut(s) 584, 767
BsgI GTGCAG 2 cut(s) 796, 842
BshFI GGCC 5 cut(s) 418, 652, 793, 855, 894
BshNI GGYRCC 2 cut(s) 303, 357
BshTI ACCGGT 1 cut(s) 360
BsiHKCI CYCGRG 1 cut(s) 897
BsiSI CCGG 3 cut(s) 307, 361, 649
BslFI GGGAC 2 cut(s) 321, 782
BslI CCNNNNNNNGG 3 cut(s) 214, 598, 718
BsmFI GGGAC 2 cut(s) 321, 782
BsmI GAATGC 2 cut(s) 488, 843
BsnI GGCC 5 cut(s) 418, 652, 793, 855, 894
BsoBI CYCGRG 1 cut(s) 897
Bsp143I GATC 2 cut(s) 266, 581
BspACI CCGC 1 cut(s) 215
BspANI GGCC 5 cut(s) 418, 652, 793, 855, 894
BspCNI CTCAG 3 cut(s) 136, 658, 861
BspHI TCATGA 1 cut(s) 847
BspLI GGNNCC 5 cut(s) 72, 305, 337, 359, 603
BspPI GGATC 2 cut(s) 274, 589
BspT107I GGYRCC 2 cut(s) 303, 357
BsrDI GCAATG 1 cut(s) 677
BsrFI RCCGGY 1 cut(s) 360
BsrI ACTGG 2 cut(s) 236, 866
BssAI RCCGGY 1 cut(s) 360
BssECI CCNNGG 4 cut(s) 451, 517, 597, 896
BssMI GATC 2 cut(s) 266, 581
BssSI CACGAG 1 cut(s) 770
BssT1I CCWWGG 1 cut(s) 517
Bst2BI CACGAG 1 cut(s) 770
Bst2UI CCWGG 2 cut(s) 599, 606
Bst4CI ACNGT 4 cut(s) 205, 296, 303, 452
BstAPI GCANNNNNTGC 1 cut(s) 364
BstBAI YACGTR 1 cut(s) 77
BstC8I GCNNGC 2 cut(s) 753, 857
BstDEI CTNAG 3 cut(s) 144, 666, 869
BstDSI CCRYGG 1 cut(s) 451
BstF5I GGATG 4 cut(s) 202, 218, 592, 609
BstKTI GATC 2 cut(s) 269, 584
BstMBI GATC 2 cut(s) 266, 581
BstMWI GCNNNNNNNGC 2 cut(s) 364, 764
BstNI CCWGG 2 cut(s) 599, 606
BstNSI RCATGY 2 cut(s) 513, 810
BstSCI CCNGG 3 cut(s) 306, 597, 604
BstV1I GCAGC 2 cut(s) 584, 767
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 266
BstXI CCANNNNNNTGG 1 cut(s) 524
BstYI RGATCY 1 cut(s) 266
BsuRI GGCC 5 cut(s) 418, 652, 793, 855, 894
BtgI CCRYGG 1 cut(s) 451
BtsCI GGATG 4 cut(s) 202, 218, 592, 609
BtsI GCAGTG 2 cut(s) 374, 801
BtsIMutI CAGTG 5 cut(s) 141, 301, 374, 801, 859
Cac8I GCNNGC 2 cut(s) 753, 857
CciI TCATGA 1 cut(s) 847
Cfr10I RCCGGY 1 cut(s) 360
Cfr13I GGNCC 6 cut(s) 233, 335, 416, 589, 792, 893
CseI GACGC 1 cut(s) 502
Csp6I GTAC 4 cut(s) 304, 555, 686, 692
CspAI ACCGGT 1 cut(s) 360
CviAII CATG 8 cut(s) 129, 223, 374, 510, 713, 717, 807, 848
CviQI GTAC 4 cut(s) 304, 555, 686, 692
DdeI CTNAG 3 cut(s) 144, 666, 869
DpnI GATC 2 cut(s) 268, 583
DpnII GATC 2 cut(s) 266, 581
DraI TTTAAA 2 cut(s) 330, 432
Eco130I CCWWGG 1 cut(s) 517
Eco32I GATATC 1 cut(s) 459
Eco47I GGWCC 3 cut(s) 233, 335, 589
Eco57I CTGAAG 1 cut(s) 432
Eco72I CACGTG 1 cut(s) 77
Eco88I CYCGRG 1 cut(s) 897
EcoO109I RGGNCCY 1 cut(s) 335
EcoRII CCWGG 2 cut(s) 597, 604
EcoRV GATATC 1 cut(s) 459
EcoT14I CCWWGG 1 cut(s) 517
EcoT22I ATGCAT 1 cut(s) 718
ErhI CCWWGG 1 cut(s) 517
FaeI CATG 8 cut(s) 132, 226, 377, 513, 716, 720, 810, 851
FalI AAGNNNNNCTT 2 cut(s) 159, 191
FaqI GGGAC 2 cut(s) 321, 782
FatI CATG 8 cut(s) 128, 222, 373, 509, 712, 716, 806, 847
Fnu4HI GCNGC 3 cut(s) 216, 573, 756
FokI GGATG 4 cut(s) 205, 209, 579, 596
Fsp4HI GCNGC 3 cut(s) 216, 573, 756
FspBI CTAG 2 cut(s) 825, 840
GluI GCNGC 3 cut(s) 216, 573, 756
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 5 cut(s) 418, 652, 793, 855, 894
HapII CCGG 3 cut(s) 307, 361, 649
HgaI GACGC 1 cut(s) 502
Hin1II CATG 8 cut(s) 132, 226, 377, 513, 716, 720, 810, 851
HincII GTYRAC 1 cut(s) 172
HindII GTYRAC 1 cut(s) 172
HinfI GANTC 7 cut(s) 101, 283, 320, 386, 818, 865, 877
HpaII CCGG 3 cut(s) 307, 361, 649
HphI GGTGA 1 cut(s) 773
Hpy166II GTNNAC 2 cut(s) 172, 299
Hpy188I TCNGA 2 cut(s) 657, 870
Hpy188III TCNNGA 5 cut(s) 30, 124, 317, 848, 899
Hpy8I GTNNAC 2 cut(s) 172, 299
HpyAV CCTTC 2 cut(s) 407, 730
HpyCH4III ACNGT 4 cut(s) 205, 296, 303, 452
HpyCH4IV ACGT 2 cut(s) 11, 76
HpyCH4V TGCA 8 cut(s) 4, 160, 367, 716, 767, 777, 806, 859
HpyF10VI GCNNNNNNNGC 2 cut(s) 364, 764
HpyF3I CTNAG 3 cut(s) 144, 666, 869
HpySE526I ACGT 2 cut(s) 11, 76
Hsp92II CATG 8 cut(s) 132, 226, 377, 513, 716, 720, 810, 851
KpnI GGTACC 1 cut(s) 307
Kzo9I GATC 2 cut(s) 266, 581
LmnI GCTCC 2 cut(s) 70, 159
Lsp1109I GCAGC 2 cut(s) 584, 767
LweI GCATC 4 cut(s) 227, 618, 731, 754
MaeI CTAG 2 cut(s) 825, 840
MaeII ACGT 2 cut(s) 11, 76
MaeIII GTNAC 6 cut(s) 94, 181, 439, 491, 505, 673
MalI GATC 2 cut(s) 268, 583
MboI GATC 2 cut(s) 266, 581
MboII GAAGA 1 cut(s) 149
MfeI CAATTG 1 cut(s) 444
MflI RGATCY 1 cut(s) 266
MluCI AATT 2 cut(s) 444, 475
MlyI GAGTC 3 cut(s) 110, 277, 871
MnlI CCTC 9 cut(s) 25, 218, 252, 430, 572, 623, 642, 663, 906
Mph1103I ATGCAT 1 cut(s) 718
MseI TTAA 4 cut(s) 329, 431, 699, 836
MslI CAYNNNNRTG 1 cut(s) 772
MspA1I CMGCKG 2 cut(s) 575, 758
MspI CCGG 3 cut(s) 307, 361, 649
MspR9I CCNGG 3 cut(s) 308, 599, 606
MunI CAATTG 1 cut(s) 444
Mva1269I GAATGC 2 cut(s) 488, 843
MvaI CCWGG 2 cut(s) 599, 606
MwoI GCNNNNNNNGC 2 cut(s) 364, 764
NciI CCSGG 1 cut(s) 308
NdeII GATC 2 cut(s) 266, 581
NlaIII CATG 8 cut(s) 132, 226, 377, 513, 716, 720, 810, 851
NlaIV GGNNCC 5 cut(s) 72, 305, 337, 359, 603
NmuCI GTSAC 4 cut(s) 94, 491, 505, 673
NsiI ATGCAT 1 cut(s) 718
NspI RCATGY 2 cut(s) 513, 810
OliI CACNNNNGTG 1 cut(s) 772
PagI TCATGA 1 cut(s) 847
PctI GAATGC 2 cut(s) 488, 843
PfeI GAWTC 4 cut(s) 320, 386, 818, 865
PflFI GACNNNGTC 1 cut(s) 100
PinAI ACCGGT 1 cut(s) 360
PkrI GCNGC 3 cut(s) 217, 574, 757
PleI GAGTC 3 cut(s) 109, 277, 871
PmaCI CACGTG 1 cut(s) 77
PmlI CACGTG 1 cut(s) 77
PpsI GAGTC 3 cut(s) 109, 277, 871
Ppu21I YACGTR 1 cut(s) 77
PpuMI RGGWCCY 1 cut(s) 335
Psp5II RGGWCCY 1 cut(s) 335
Psp6I CCWGG 2 cut(s) 597, 604
PspCI CACGTG 1 cut(s) 77
PspGI CCWGG 2 cut(s) 597, 604
PspN4I GGNNCC 5 cut(s) 72, 305, 337, 359, 603
PspPI GGNCC 6 cut(s) 233, 335, 416, 589, 792, 893
PspPPI RGGWCCY 1 cut(s) 335
PsuI RGATCY 1 cut(s) 266
PsyI GACNNNGTC 1 cut(s) 100
PvuII CAGCTG 2 cut(s) 575, 758
RsaI GTAC 4 cut(s) 305, 556, 687, 693
RsaNI GTAC 4 cut(s) 304, 555, 686, 692
RseI CAYNNNNRTG 1 cut(s) 772
SaqAI TTAA 4 cut(s) 329, 431, 699, 836
SatI GCNGC 3 cut(s) 216, 573, 756
Sau3AI GATC 2 cut(s) 266, 581
Sau96I GGNCC 6 cut(s) 233, 335, 416, 589, 792, 893
ScaI AGTACT 1 cut(s) 556
SchI GAGTC 3 cut(s) 110, 277, 871
ScrFI CCNGG 3 cut(s) 308, 599, 606
SfaNI GCATC 4 cut(s) 227, 618, 731, 754
SinI GGWCC 3 cut(s) 233, 335, 589
SmiMI CAYNNNNRTG 1 cut(s) 772
SpeI ACTAGT 1 cut(s) 824
Sse9I AATT 2 cut(s) 444, 475
SsiI CCGC 1 cut(s) 215
SspMI CTAG 2 cut(s) 825, 840
StyD4I CCNGG 3 cut(s) 306, 597, 604
StyI CCWWGG 1 cut(s) 517
TaaI ACNGT 4 cut(s) 205, 296, 303, 452
TaiI ACGT 2 cut(s) 14, 79
TasI AATT 2 cut(s) 444, 475
TatI WGTACW 2 cut(s) 554, 685
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 4 cut(s) 320, 386, 818, 865
Tru1I TTAA 4 cut(s) 329, 431, 699, 836
Tru9I TTAA 4 cut(s) 329, 431, 699, 836
TscAI CASTG 5 cut(s) 148, 301, 374, 808, 866
TseFI GTSAC 4 cut(s) 94, 491, 505, 673
TseI GCWGC 2 cut(s) 572, 755
Tsp45I GTSAC 4 cut(s) 94, 491, 505, 673
TspDTI ATGAA 3 cut(s) 420, 555, 836
TspRI CASTG 5 cut(s) 148, 301, 374, 808, 866
Tth111I GACNNNGTC 1 cut(s) 100
VpaK11BI GGWCC 3 cut(s) 233, 335, 589
XapI RAATTY 1 cut(s) 475
XceI RCATGY 2 cut(s) 513, 810
XspI CTAG 2 cut(s) 825, 840
ZrmI AGTACT 1 cut(s) 556
Zsp2I ATGCAT 1 cut(s) 718
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.