Rmu_ssc0000311.1_g000025

NADH kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_ssc0000311.1
OG0000832
Physical Location & Seq
Forward (+)
113143 .. 119807
6665 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_ssc0000311.1_g000025.1.cds

Sequence Viewer

Length: 822 bp
atgatctgggcacccacaacaaaaccggacaaaagcttctcgcctaccaggtgttggactccggcgagaagcccggtcgcagaatcaactgtgctcgtcgccgtccgatctcaacaaagtcctcgatctgcagcatctgaggtgtcgccttcggcctatgcggcgtcgtcctgcatctgcagcgtcgtccggcctctgtggcgtcatctccggcctaggcggcgtcgtctgacctctgtggatcggtgcatgggtgatgcaagtgtttcatgcccacaaccagagaatggttgtctcaattcaccttccctcttaagttcagagaaggcagtcgaggaacttctcgagcaatcttcacttcaggaaacagatgaccacctcatagagttctcagaggctatgagaacggttgcaaaggccctgagacgagctgccgaaggaaaggcttctgcacaagctgaagcagctgaatggaagcgcaaatatgaactggagagggcgcgcaatctgcatctggaacctaaagggccatcacatagagagaataacggggatgatgagaggatagagaacttggccaggagatcaaatgaccaatctgaacaatgttgtgggagtaatgggatatgctctcatgaagttcttcgggatggtgaatgtgatactgattcaaaatcgcttctcaataagtttgcaagaaaggcgtcattcaaactttcatggtgctgcaaaggtgacaagagtgaccagcacaagcatgacattgtctcttttgaaagaggaaacataacaactgcagagcgaagcagtaaacaggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00760 ko01100 map00760 map01100
Pfam Domains
Protein Families
NAD_kinase

Protein Analysis

273

Amino Acids

30.4

Weight (kDa)

8.44

Isoelectric Point (pI)

73.73

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21070 AT3G21070 AT3G21070 AT3G21070
fragaria_vesca FvH4_3g28510
malus_domestica MD03G1172500.v1.1 MD11G1190400.v1.1
prunus_persica Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1
pyrus_communis pycom03g12970 pycom11g16670
rosa_chinensis RchiOBHm_Chr5g0052801
rosa_laevigata RLG00000034795
rosa_multiflora Rmu_sc0004335.1_g000006 Rmu_sc0032421.1_g000001 Rmu_ssc0000311.1_g000025
rosa_roxburghii Rroxscaffold_1G00028620 Rroxscaffold_4G00318540
rosa_rugosa Rorug05G0269700 Rorug05G0269800
rosa_samantha Rh5AG341600 Rh5BG352300 Rh5CG379000 Rh5DG368700
rosa_wichuraiana Rw5G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 10
AccB7I CCANNNNNTGG 2 cut(s) 54, 287
AccII CGCG 1 cut(s) 502
AciI CCGC 2 cut(s) 161, 220
AclWI GGATC 1 cut(s) 249
AcoI YGGCCR 1 cut(s) 576
AcuI CTGAAG 2 cut(s) 344, 480
AcyI GRCGYC 4 cut(s) 164, 202, 223, 704
AfiI CCNNNNNNNGG 2 cut(s) 54, 287
AflII CTTAAG 1 cut(s) 313
AgsI TTSAA 3 cut(s) 672, 712, 776
AjnI CCWGG 2 cut(s) 47, 578
AluBI AGCT 4 cut(s) 36, 431, 458, 467
AluI AGCT 4 cut(s) 36, 431, 458, 467
Alw21I GWGCWC 1 cut(s) 96
Alw26I GTCTC 3 cut(s) 299, 418, 772
AlwI GGATC 1 cut(s) 249
AlwNI CAGNNNCTG 1 cut(s) 137
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 6 cut(s) 153, 191, 212, 417, 527, 576
ApeKI GCWGC 5 cut(s) 131, 180, 431, 464, 726
Asp700I GAANNNNTTC 2 cut(s) 445, 642
AspA2I CCTAGG 1 cut(s) 215
AspLEI GCGC 3 cut(s) 480, 502, 504
AspS9I GGNCC 2 cut(s) 418, 527
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 4 cut(s) 266, 294, 665, 746
AvaI CYCGRG 1 cut(s) 344
AvrII CCTAGG 1 cut(s) 215
BaeGI GKGCMC 1 cut(s) 13
BalI TGGCCA 1 cut(s) 578
BanI GGYRCC 1 cut(s) 10
Bbv12I GWGCWC 1 cut(s) 96
BbvI GCAGC 5 cut(s) 143, 192, 418, 476, 713
BccI CCATC 2 cut(s) 538, 644
BceAI ACGGC 1 cut(s) 86
BciT130I CCWGG 2 cut(s) 49, 580
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 3 cut(s) 299, 418, 772
BfaI CTAG 1 cut(s) 216
BfmI CTRYAG 3 cut(s) 129, 178, 795
BfrI CTTAAG 1 cut(s) 313
BglI GCCNNNNNGGC 3 cut(s) 161, 199, 220
BisI GCNGC 7 cut(s) 132, 162, 181, 221, 432, 465, 727
BlnI CCTAGG 1 cut(s) 215
BlsI GCNGC 7 cut(s) 133, 163, 182, 222, 433, 466, 728
Bme1390I CCNGG 3 cut(s) 49, 74, 580
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 2 cut(s) 418, 527
BmiI GGNNCC 2 cut(s) 12, 519
BmrFI CCNGG 3 cut(s) 49, 74, 580
BmsI GCATC 4 cut(s) 143, 183, 247, 520
BpmI CTGGAG 1 cut(s) 512
BpuMI CCSGG 1 cut(s) 74
BsaHI GRCGYC 4 cut(s) 164, 202, 223, 704
BsaJI CCNNGG 1 cut(s) 215
BsaWI WCCGGW 1 cut(s) 25
Bsc4I CCNNNNNNNGG 2 cut(s) 54, 287
Bse1I ACTGG 1 cut(s) 495
BseBI CCWGG 2 cut(s) 49, 580
BseDI CCNNGG 1 cut(s) 215
BseGI GGATG 2 cut(s) 559, 655
BseLI CCNNNNNNNGG 2 cut(s) 54, 287
BseMII CTCAG 3 cut(s) 129, 405, 413
BseNI ACTGG 1 cut(s) 495
BsePI GCGCGC 1 cut(s) 500
BseSI GKGCMC 1 cut(s) 13
BseXI GCAGC 5 cut(s) 143, 192, 418, 476, 713
BsgI GTGCAG 1 cut(s) 435
Bsh1236I CGCG 1 cut(s) 502
Bsh1285I CGRYCG 1 cut(s) 78
BshFI GGCC 6 cut(s) 155, 193, 214, 419, 529, 578
BshNI GGYRCC 1 cut(s) 10
BsiEI CGRYCG 1 cut(s) 78
BsiHKAI GWGCWC 1 cut(s) 96
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 5 cut(s) 26, 62, 74, 190, 211
BslI CCNNNNNNNGG 2 cut(s) 54, 287
BsmAI GTCTC 3 cut(s) 299, 418, 772
BsmBI CGTCTC 1 cut(s) 418
BsnI GGCC 6 cut(s) 155, 193, 214, 419, 529, 578
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 13, 96
Bsp143I GATC 5 cut(s) 3, 107, 125, 241, 584
BspACI CCGC 2 cut(s) 161, 220
BspANI GGCC 6 cut(s) 155, 193, 214, 419, 529, 578
BspCNI CTCAG 3 cut(s) 130, 404, 414
BspFNI CGCG 1 cut(s) 502
BspHI TCATGA 1 cut(s) 634
BspLI GGNNCC 2 cut(s) 12, 519
BspMAI CTGCAG 3 cut(s) 133, 182, 799
BspPI GGATC 1 cut(s) 249
BspT107I GGYRCC 1 cut(s) 10
BspTI CTTAAG 1 cut(s) 313
BsrI ACTGG 1 cut(s) 495
BssECI CCNNGG 1 cut(s) 215
BssHII GCGCGC 1 cut(s) 500
BssMI GATC 5 cut(s) 3, 107, 125, 241, 584
BssNI GRCGYC 4 cut(s) 164, 202, 223, 704
BssT1I CCWWGG 1 cut(s) 215
Bst2UI CCWGG 2 cut(s) 49, 580
Bst4CI ACNGT 2 cut(s) 91, 409
BstACI GRCGYC 4 cut(s) 164, 202, 223, 704
BstAFI CTTAAG 1 cut(s) 313
BstC8I GCNNGC 1 cut(s) 502
BstDEI CTNAG 3 cut(s) 138, 391, 422
BstF5I GGATG 2 cut(s) 559, 655
BstFNI CGCG 1 cut(s) 502
BstHHI GCGC 3 cut(s) 480, 502, 504
BstKTI GATC 5 cut(s) 6, 110, 128, 244, 587
BstMAI GTCTC 3 cut(s) 299, 418, 772
BstMBI GATC 5 cut(s) 3, 107, 125, 241, 584
BstMCI CGRYCG 1 cut(s) 78
BstMWI GCNNNNNNNGC 7 cut(s) 161, 180, 199, 220, 464, 508, 701
BstNI CCWGG 2 cut(s) 49, 580
BstSCI CCNGG 3 cut(s) 47, 72, 578
BstSFI CTRYAG 3 cut(s) 129, 178, 795
BstSLI GKGCMC 1 cut(s) 13
BstUI CGCG 1 cut(s) 502
BstV1I GCAGC 5 cut(s) 143, 192, 418, 476, 713
BsuRI GGCC 6 cut(s) 155, 193, 214, 419, 529, 578
BtsCI GGATG 2 cut(s) 559, 655
Cac8I GCNNGC 1 cut(s) 502
CaiI CAGNNNCTG 1 cut(s) 137
CciI TCATGA 1 cut(s) 634
CfoI GCGC 3 cut(s) 480, 502, 504
Cfr13I GGNCC 2 cut(s) 418, 527
CseI GACGC 5 cut(s) 153, 172, 191, 212, 693
CsiI ACCWGGT 1 cut(s) 47
CviAII CATG 5 cut(s) 250, 270, 635, 720, 758
DdeI CTNAG 3 cut(s) 138, 391, 422
DpnI GATC 5 cut(s) 5, 109, 127, 243, 586
DpnII GATC 5 cut(s) 3, 107, 125, 241, 584
EaeI YGGCCR 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 215
Eco57I CTGAAG 2 cut(s) 344, 480
Eco88I CYCGRG 1 cut(s) 344
EcoO109I RGGNCCY 1 cut(s) 418
EcoRII CCWGG 2 cut(s) 47, 578
EcoT14I CCWWGG 1 cut(s) 215
ErhI CCWWGG 1 cut(s) 215
Esp3I CGTCTC 1 cut(s) 418
FaeI CATG 5 cut(s) 253, 273, 638, 723, 761
FatI CATG 5 cut(s) 249, 269, 634, 719, 757
Fnu4HI GCNGC 7 cut(s) 132, 162, 181, 221, 432, 465, 727
FokI GGATG 2 cut(s) 566, 662
Fsp4HI GCNGC 7 cut(s) 132, 162, 181, 221, 432, 465, 727
FspBI CTAG 1 cut(s) 216
GlaI GCGC 3 cut(s) 479, 501, 503
GluI GCNGC 7 cut(s) 132, 162, 181, 221, 432, 465, 727
GsuI CTGGAG 1 cut(s) 512
HaeIII GGCC 6 cut(s) 155, 193, 214, 419, 529, 578
HapII CCGG 5 cut(s) 26, 62, 74, 190, 211
HgaI GACGC 5 cut(s) 153, 172, 191, 212, 693
HhaI GCGC 3 cut(s) 480, 502, 504
Hin1I GRCGYC 4 cut(s) 164, 202, 223, 704
Hin1II CATG 5 cut(s) 253, 273, 638, 723, 761
Hin6I GCGC 3 cut(s) 478, 500, 502
HinP1I GCGC 3 cut(s) 478, 500, 502
HindIII AAGCTT 1 cut(s) 34
HinfI GANTC 3 cut(s) 58, 83, 668
HpaII CCGG 5 cut(s) 26, 62, 74, 190, 211
HphI GGTGA 4 cut(s) 266, 294, 665, 746
Hpy166II GTNNAC 1 cut(s) 812
Hpy188I TCNGA 6 cut(s) 107, 139, 231, 322, 394, 601
Hpy188III TCNNGA 5 cut(s) 344, 362, 515, 635, 647
Hpy8I GTNNAC 1 cut(s) 812
Hpy99I CGWCG 4 cut(s) 101, 169, 188, 228
HpyAV CCTTC 4 cut(s) 159, 315, 319, 431
HpyCH4III ACNGT 2 cut(s) 91, 409
HpyF10VI GCNNNNNNNGC 7 cut(s) 161, 180, 199, 220, 464, 508, 701
HpyF3I CTNAG 3 cut(s) 138, 391, 422
Hsp92I GRCGYC 4 cut(s) 164, 202, 223, 704
Hsp92II CATG 5 cut(s) 253, 273, 638, 723, 761
HspAI GCGC 3 cut(s) 478, 500, 502
Kzo9I GATC 5 cut(s) 3, 107, 125, 241, 584
Lsp1109I GCAGC 5 cut(s) 143, 192, 418, 476, 713
LweI GCATC 4 cut(s) 143, 183, 247, 520
MabI ACCWGGT 1 cut(s) 47
MaeI CTAG 1 cut(s) 216
MaeIII GTNAC 2 cut(s) 734, 743
MalI GATC 5 cut(s) 5, 109, 127, 243, 586
MboI GATC 5 cut(s) 3, 107, 125, 241, 584
MboII GAAGA 2 cut(s) 345, 635
MhlI GDGCHC 2 cut(s) 13, 96
MlsI TGGCCA 1 cut(s) 578
MluCI AATT 1 cut(s) 298
MluNI TGGCCA 1 cut(s) 578
MlyI GAGTC 1 cut(s) 52
MmeI TCCRAC 1 cut(s) 35
Mox20I TGGCCA 1 cut(s) 578
MroXI GAANNNNTTC 2 cut(s) 445, 642
MscI TGGCCA 1 cut(s) 578
MseI TTAA 1 cut(s) 314
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 578
MspA1I CMGCKG 1 cut(s) 467
MspCI CTTAAG 1 cut(s) 313
MspI CCGG 5 cut(s) 26, 62, 74, 190, 211
MspR9I CCNGG 3 cut(s) 49, 74, 580
MvaI CCWGG 2 cut(s) 49, 580
MvnI CGCG 1 cut(s) 502
MwoI GCNNNNNNNGC 7 cut(s) 161, 180, 199, 220, 464, 508, 701
NciI CCSGG 1 cut(s) 74
NdeII GATC 5 cut(s) 3, 107, 125, 241, 584
NlaIII CATG 5 cut(s) 253, 273, 638, 723, 761
NlaIV GGNNCC 2 cut(s) 12, 519
NmuCI GTSAC 2 cut(s) 734, 743
PaeR7I CTCGAG 1 cut(s) 344
PagI TCATGA 1 cut(s) 634
PauI GCGCGC 1 cut(s) 500
PdmI GAANNNNTTC 2 cut(s) 445, 642
PfeI GAWTC 2 cut(s) 83, 668
PflFI GACNNNGTC 1 cut(s) 764
PflMI CCANNNNNTGG 2 cut(s) 54, 287
PkrI GCNGC 7 cut(s) 133, 163, 182, 222, 433, 466, 728
PleI GAGTC 1 cut(s) 52
PpsI GAGTC 1 cut(s) 52
Psp6I CCWGG 2 cut(s) 47, 578
PspGI CCWGG 2 cut(s) 47, 578
PspN4I GGNNCC 2 cut(s) 12, 519
PspPI GGNCC 2 cut(s) 418, 527
PstI CTGCAG 3 cut(s) 133, 182, 799
PstNI CAGNNNCTG 1 cut(s) 137
PsyI GACNNNGTC 1 cut(s) 764
PteI GCGCGC 1 cut(s) 500
PvuII CAGCTG 1 cut(s) 467
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 1 cut(s) 314
SatI GCNGC 7 cut(s) 132, 162, 181, 221, 432, 465, 727
Sau3AI GATC 5 cut(s) 3, 107, 125, 241, 584
Sau96I GGNCC 2 cut(s) 418, 527
SchI GAGTC 1 cut(s) 52
ScrFI CCNGG 3 cut(s) 49, 74, 580
SduI GDGCHC 2 cut(s) 13, 96
SexAI ACCWGGT 1 cut(s) 47
SfaNI GCATC 4 cut(s) 143, 183, 247, 520
SfcI CTRYAG 3 cut(s) 129, 178, 795
Sfr274I CTCGAG 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 2 cut(s) 313, 344
SmoI CTYRAG 2 cut(s) 313, 344
Sse9I AATT 1 cut(s) 298
SsiI CCGC 2 cut(s) 161, 220
SspMI CTAG 1 cut(s) 216
StyD4I CCNGG 3 cut(s) 47, 72, 578
StyI CCWWGG 1 cut(s) 215
TaaI ACNGT 2 cut(s) 91, 409
TaqI TCGA 3 cut(s) 124, 333, 345
TasI AATT 1 cut(s) 298
TauI GCSGC 2 cut(s) 164, 223
TfiI GAWTC 2 cut(s) 83, 668
Tru1I TTAA 1 cut(s) 314
Tru9I TTAA 1 cut(s) 314
TseFI GTSAC 2 cut(s) 734, 743
TseI GCWGC 5 cut(s) 131, 180, 431, 464, 726
Tsp45I GTSAC 2 cut(s) 734, 743
TspDTI ATGAA 4 cut(s) 258, 501, 651, 708
Tth111I GACNNNGTC 1 cut(s) 764
Van91I CCANNNNNTGG 2 cut(s) 54, 287
Vha464I CTTAAG 1 cut(s) 313
XhoI CTCGAG 1 cut(s) 344
XmaJI CCTAGG 1 cut(s) 215
XmnI GAANNNNTTC 2 cut(s) 445, 642
XspI CTAG 1 cut(s) 216
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.