Rmu_sc0032421.1_g000001

NADH kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0032421.1
OG0000832
Physical Location & Seq
Forward (+)
2207 .. 3360
1154 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0032421.1_g000001.1.cds

Sequence Viewer

Length: 519 bp
atgctttgcttcacagacactgagattatgctcctgcatacaaaagttgaccttgtggtaactcttggtggggatggaactgtcctctgggcagcatccatgttcaaaggaccagttcctcctgttgtgccattttctttaggatctctgggatttatgactccatttcacagtgaacggtaccgggagtatcttgattcacttttaaaaggtcccattagtatcacgctacggcaccggttgcagtgccatgttattagagaatcagctaaaaatgagtatgaaactgaagggccaatacttgttttaaatgaggttacaattgaccgtgggatatcatcatatctcacaaatttggaatgctattgtgacaactcttttgtcacatgcgtccaaggagatgggctgatattatcgacaacatctggcagtactgcgtattcattagcagctggaggatcaatggtccatccccaggtatgttcctatgttttcatgtatcggcggtgcctgttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00760 ko01100 map00760 map01100
Pfam Domains
Protein Families
NAD_kinase

Protein Analysis

172

Amino Acids

19.0

Weight (kDa)

5.67

Isoelectric Point (pI)

32.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21070 AT3G21070 AT3G21070 AT3G21070
fragaria_vesca FvH4_3g28510
malus_domestica MD03G1172500.v1.1 MD11G1190400.v1.1
prunus_persica Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1
pyrus_communis pycom03g12970 pycom11g16670
rosa_chinensis RchiOBHm_Chr5g0052801
rosa_laevigata RLG00000034795
rosa_multiflora Rmu_sc0004335.1_g000006 Rmu_sc0032421.1_g000001 Rmu_ssc0000311.1_g000025
rosa_roxburghii Rroxscaffold_1G00028620 Rroxscaffold_4G00318540
rosa_rugosa Rorug05G0269700 Rorug05G0269800
rosa_samantha Rh5AG341600 Rh5BG352300 Rh5CG379000 Rh5DG368700
rosa_wichuraiana Rw5G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 180
AccB1I GGYRCC 3 cut(s) 180, 234, 507
AciI CCGC 1 cut(s) 505
AclWI GGATC 2 cut(s) 151, 466
AcsI RAATTY 1 cut(s) 352
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 2 cut(s) 182, 433
AfiI CCNNNNNNNGG 1 cut(s) 475
AgeI ACCGGT 1 cut(s) 237
AgsI TTSAA 1 cut(s) 106
AjnI CCWGG 1 cut(s) 474
AluBI AGCT 2 cut(s) 269, 452
AluI AGCT 2 cut(s) 269, 452
AlwI GGATC 2 cut(s) 151, 466
AlwNI CAGNNNCTG 1 cut(s) 20
AoxI GGCC 1 cut(s) 293
ApeKI GCWGC 2 cut(s) 92, 449
ApoI RAATTY 1 cut(s) 352
ArsI GACNNNNNNTTYG 2 cut(s) 362, 394
AsiGI ACCGGT 1 cut(s) 237
Asp718I GGTACC 1 cut(s) 180
AspS9I GGNCC 4 cut(s) 110, 212, 293, 466
AsuC2I CCSGG 1 cut(s) 185
AvaII GGWCC 3 cut(s) 110, 212, 466
BanI GGYRCC 3 cut(s) 180, 234, 507
BarI GAAGNNNNNNTAC 2 cut(s) 282, 314
BbvI GCAGC 2 cut(s) 104, 461
BccI CCATC 3 cut(s) 68, 395, 477
BceAI ACGGC 1 cut(s) 248
BciT130I CCWGG 1 cut(s) 476
BcnI CCSGG 1 cut(s) 185
BisI GCNGC 2 cut(s) 93, 450
BlsI GCNGC 2 cut(s) 94, 451
BmcAI AGTACT 1 cut(s) 433
Bme1390I CCNGG 2 cut(s) 185, 476
Bme18I GGWCC 3 cut(s) 110, 212, 466
BmgT120I GGNCC 4 cut(s) 110, 212, 293, 466
BmiI GGNNCC 4 cut(s) 182, 214, 236, 509
BmrFI CCNGG 2 cut(s) 185, 476
BmsI GCATC 1 cut(s) 104
BpmI CTGGAG 1 cut(s) 474
BpuMI CCSGG 1 cut(s) 185
BsaJI CCNNGG 3 cut(s) 328, 394, 474
BsaWI WCCGGW 1 cut(s) 237
Bsc4I CCNNNNNNNGG 1 cut(s) 475
Bse118I RCCGGY 1 cut(s) 237
Bse1I ACTGG 1 cut(s) 113
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 3 cut(s) 328, 394, 474
BseGI GGATG 3 cut(s) 79, 95, 469
BseLI CCNNNNNNNGG 1 cut(s) 475
BseMII CTCAG 1 cut(s) 12
BseNI ACTGG 1 cut(s) 113
BseXI GCAGC 2 cut(s) 104, 461
BshFI GGCC 1 cut(s) 295
BshNI GGYRCC 3 cut(s) 180, 234, 507
BshTI ACCGGT 1 cut(s) 237
BsiSI CCGG 2 cut(s) 184, 238
BslFI GGGAC 1 cut(s) 198
BslI CCNNNNNNNGG 1 cut(s) 475
BsmFI GGGAC 1 cut(s) 198
BsmI GAATGC 1 cut(s) 365
BsnI GGCC 1 cut(s) 295
Bsp143I GATC 2 cut(s) 143, 458
BspACI CCGC 1 cut(s) 505
BspANI GGCC 1 cut(s) 295
BspCNI CTCAG 1 cut(s) 13
BspLI GGNNCC 4 cut(s) 182, 214, 236, 509
BspPI GGATC 2 cut(s) 151, 466
BspT107I GGYRCC 3 cut(s) 180, 234, 507
BsrFI RCCGGY 1 cut(s) 237
BsrI ACTGG 1 cut(s) 113
BssAI RCCGGY 1 cut(s) 237
BssECI CCNNGG 3 cut(s) 328, 394, 474
BssMI GATC 2 cut(s) 143, 458
BssT1I CCWWGG 1 cut(s) 394
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 4 cut(s) 82, 173, 180, 329
BstAPI GCANNNNNTGC 1 cut(s) 241
BstDEI CTNAG 1 cut(s) 21
BstDSI CCRYGG 1 cut(s) 328
BstF5I GGATG 3 cut(s) 79, 95, 469
BstKTI GATC 2 cut(s) 146, 461
BstMBI GATC 2 cut(s) 143, 458
BstMWI GCNNNNNNNGC 1 cut(s) 241
BstNI CCWGG 1 cut(s) 476
BstNSI RCATGY 1 cut(s) 390
BstSCI CCNGG 2 cut(s) 183, 474
BstV1I GCAGC 2 cut(s) 104, 461
BstX2I RGATCY 1 cut(s) 143
BstXI CCANNNNNNTGG 1 cut(s) 401
BstYI RGATCY 1 cut(s) 143
BsuRI GGCC 1 cut(s) 295
BtgI CCRYGG 1 cut(s) 328
BtsCI GGATG 3 cut(s) 79, 95, 469
BtsI GCAGTG 1 cut(s) 251
BtsIMutI CAGTG 3 cut(s) 18, 178, 251
CaiI CAGNNNCTG 1 cut(s) 20
Cfr10I RCCGGY 1 cut(s) 237
Cfr13I GGNCC 4 cut(s) 110, 212, 293, 466
CseI GACGC 1 cut(s) 379
Csp6I GTAC 2 cut(s) 181, 432
CspAI ACCGGT 1 cut(s) 237
CviAII CATG 4 cut(s) 100, 251, 387, 496
CviJI RGCY 4 cut(s) 269, 295, 406, 452
CviKI_1 RGCY 4 cut(s) 269, 295, 406, 452
CviQI GTAC 2 cut(s) 181, 432
DdeI CTNAG 1 cut(s) 21
DpnI GATC 2 cut(s) 145, 460
DpnII GATC 2 cut(s) 143, 458
DraI TTTAAA 2 cut(s) 207, 309
Eco130I CCWWGG 1 cut(s) 394
Eco32I GATATC 1 cut(s) 336
Eco47I GGWCC 3 cut(s) 110, 212, 466
Eco57I CTGAAG 1 cut(s) 309
EcoO109I RGGNCCY 1 cut(s) 212
EcoRII CCWGG 1 cut(s) 474
EcoRV GATATC 1 cut(s) 336
EcoT14I CCWWGG 1 cut(s) 394
ErhI CCWWGG 1 cut(s) 394
FaeI CATG 4 cut(s) 103, 254, 390, 499
FalI AAGNNNNNCTT 2 cut(s) 36, 68
FaqI GGGAC 1 cut(s) 198
FatI CATG 4 cut(s) 99, 250, 386, 495
Fnu4HI GCNGC 2 cut(s) 93, 450
FokI GGATG 3 cut(s) 82, 86, 456
Fsp4HI GCNGC 2 cut(s) 93, 450
GluI GCNGC 2 cut(s) 93, 450
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 1 cut(s) 295
HapII CCGG 2 cut(s) 184, 238
HgaI GACGC 1 cut(s) 379
Hin1II CATG 4 cut(s) 103, 254, 390, 499
HincII GTYRAC 1 cut(s) 49
HindII GTYRAC 1 cut(s) 49
HinfI GANTC 3 cut(s) 160, 197, 263
HpaII CCGG 2 cut(s) 184, 238
Hpy166II GTNNAC 2 cut(s) 49, 176
Hpy188III TCNNGA 1 cut(s) 194
Hpy8I GTNNAC 2 cut(s) 49, 176
HpyAV CCTTC 1 cut(s) 284
HpyCH4III ACNGT 4 cut(s) 82, 173, 180, 329
HpyCH4V TGCA 2 cut(s) 37, 244
HpyF10VI GCNNNNNNNGC 1 cut(s) 241
HpyF3I CTNAG 1 cut(s) 21
Hsp92II CATG 4 cut(s) 103, 254, 390, 499
KpnI GGTACC 1 cut(s) 184
Kzo9I GATC 2 cut(s) 143, 458
LmnI GCTCC 1 cut(s) 36
Lsp1109I GCAGC 2 cut(s) 104, 461
LweI GCATC 1 cut(s) 104
MaeIII GTNAC 4 cut(s) 58, 316, 368, 382
MalI GATC 2 cut(s) 145, 460
MboI GATC 2 cut(s) 143, 458
MfeI CAATTG 1 cut(s) 321
MflI RGATCY 1 cut(s) 143
MluCI AATT 2 cut(s) 321, 352
MlyI GAGTC 1 cut(s) 154
MnlI CCTC 4 cut(s) 95, 129, 307, 449
MseI TTAA 2 cut(s) 206, 308
MspA1I CMGCKG 1 cut(s) 452
MspI CCGG 2 cut(s) 184, 238
MspR9I CCNGG 2 cut(s) 185, 476
MunI CAATTG 1 cut(s) 321
Mva1269I GAATGC 1 cut(s) 365
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 1 cut(s) 241
NciI CCSGG 1 cut(s) 185
NdeII GATC 2 cut(s) 143, 458
NlaIII CATG 4 cut(s) 103, 254, 390, 499
NlaIV GGNNCC 4 cut(s) 182, 214, 236, 509
NmuCI GTSAC 2 cut(s) 368, 382
NspI RCATGY 1 cut(s) 390
PctI GAATGC 1 cut(s) 365
PfeI GAWTC 2 cut(s) 197, 263
PinAI ACCGGT 1 cut(s) 237
PkrI GCNGC 2 cut(s) 94, 451
PleI GAGTC 1 cut(s) 154
PpsI GAGTC 1 cut(s) 154
PpuMI RGGWCCY 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 212
Psp6I CCWGG 1 cut(s) 474
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 4 cut(s) 182, 214, 236, 509
PspPI GGNCC 4 cut(s) 110, 212, 293, 466
PspPPI RGGWCCY 1 cut(s) 212
PstNI CAGNNNCTG 1 cut(s) 20
PsuI RGATCY 1 cut(s) 143
PvuII CAGCTG 1 cut(s) 452
RsaI GTAC 2 cut(s) 182, 433
RsaNI GTAC 2 cut(s) 181, 432
SaqAI TTAA 2 cut(s) 206, 308
SatI GCNGC 2 cut(s) 93, 450
Sau3AI GATC 2 cut(s) 143, 458
Sau96I GGNCC 4 cut(s) 110, 212, 293, 466
ScaI AGTACT 1 cut(s) 433
SchI GAGTC 1 cut(s) 154
ScrFI CCNGG 2 cut(s) 185, 476
SetI ASST 6 cut(s) 54, 214, 271, 318, 454, 480
SfaNI GCATC 1 cut(s) 104
SinI GGWCC 3 cut(s) 110, 212, 466
Sse9I AATT 2 cut(s) 321, 352
SsiI CCGC 1 cut(s) 505
StyD4I CCNGG 2 cut(s) 183, 474
StyI CCWWGG 1 cut(s) 394
TaaI ACNGT 4 cut(s) 82, 173, 180, 329
TaqI TCGA 1 cut(s) 416
TasI AATT 2 cut(s) 321, 352
TatI WGTACW 1 cut(s) 431
TfiI GAWTC 2 cut(s) 197, 263
Tru1I TTAA 2 cut(s) 206, 308
Tru9I TTAA 2 cut(s) 206, 308
TscAI CASTG 3 cut(s) 25, 178, 251
TseFI GTSAC 2 cut(s) 368, 382
TseI GCWGC 2 cut(s) 92, 449
Tsp45I GTSAC 2 cut(s) 368, 382
TspDTI ATGAA 3 cut(s) 297, 432, 484
TspRI CASTG 3 cut(s) 25, 178, 251
VpaK11BI GGWCC 3 cut(s) 110, 212, 466
XapI RAATTY 1 cut(s) 352
XceI RCATGY 1 cut(s) 390
ZrmI AGTACT 1 cut(s) 433
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.