Rorug05G0269800

NADH kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0000832
Physical Location & Seq
Reverse (-)
30428925 .. 30432822
3898 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0269800.1

Sequence Viewer

Length: 501 bp
ATGGTTCAGAAGCTTGAAGCTATAAAGGGTGGTGGAGGATCCATCAGGGTAGGGGCCACCGGGACAGTCAGTTCCCTAATGACAAGAGAACTAGACTCCATCAAGGTTGAACCTCCGATGCCTATAGCTTCTTCCCGAATTAAACATCAAACAGTTCCTGTTTCTGTTCCATGTGGTGTTCCTACTCCAAAAAAGCTACCAAGGAAGTCATCTGACGAAGCCAGCAGCAGTGGAAGCAGCAACTACATGAATCAGAGACACCCTGACATTCCCCAGAAACCGAAAACTCATCTGAAAACTACTAGTCAAATCCCGATGCTCGACTCTCATAATGTTGGTATGGATAAAACTCCTATTAGGCAGAAAGCTAACAAGAAAGGACCTAATATCGTTGAAGTTGTGGACATCAAATGTGGGGGCTCGGGTAGAGCGTGGGCTGGCCCTGTAACGAATCGGCTCAAGAAGCTGAGCTTCTCAAAGCTCTCTGAGAGTGTTGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00760 ko01100 map00760 map01100
Pfam Domains
Protein Families
NAD_kinase

Protein Analysis

166

Amino Acids

17.76

Weight (kDa)

10.14

Isoelectric Point (pI)

33.06

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21070 AT3G21070 AT3G21070 AT3G21070
fragaria_vesca FvH4_3g28510
malus_domestica MD03G1172500.v1.1 MD11G1190400.v1.1
prunus_persica Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1
pyrus_communis pycom03g12970 pycom11g16670
rosa_chinensis RchiOBHm_Chr5g0052801
rosa_laevigata RLG00000034795
rosa_multiflora Rmu_sc0004335.1_g000006 Rmu_sc0032421.1_g000001 Rmu_ssc0000311.1_g000025
rosa_roxburghii Rroxscaffold_1G00028620 Rroxscaffold_4G00318540
rosa_rugosa Rorug05G0269700 Rorug05G0269800
rosa_samantha Rh5AG341600 Rh5BG352300 Rh5CG379000 Rh5DG368700
rosa_wichuraiana Rw5G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 33, 46
AgsI TTSAA 3 cut(s) 17, 110, 395
AhlI ACTAGT 1 cut(s) 302
AloI GAACNNNNNNTCC 2 cut(s) 55, 87
AluBI AGCT 8 cut(s) 13, 20, 128, 196, 368, 466, 471, 481
AluI AGCT 8 cut(s) 13, 20, 128, 196, 368, 466, 471, 481
Alw26I GTCTC 1 cut(s) 250
AlwI GGATC 2 cut(s) 33, 46
AlwNI CAGNNNCTG 1 cut(s) 158
Ama87I CYCGRG 1 cut(s) 421
AoxI GGCC 2 cut(s) 54, 439
ApeKI GCWGC 2 cut(s) 225, 237
AspS9I GGNCC 3 cut(s) 54, 380, 440
AsuC2I CCSGG 1 cut(s) 61
AvaI CYCGRG 1 cut(s) 421
AvaII GGWCC 1 cut(s) 380
BamHI GGATCC 1 cut(s) 38
BanII GRGCYC 1 cut(s) 422
BbvI GCAGC 2 cut(s) 237, 249
BccI CCATC 2 cut(s) 50, 107
BcnI CCSGG 1 cut(s) 61
BcoDI GTCTC 1 cut(s) 250
BcuI ACTAGT 1 cut(s) 302
BfaI CTAG 2 cut(s) 92, 303
BfmI CTRYAG 1 cut(s) 123
BisI GCNGC 2 cut(s) 226, 238
BlpI GCTNAGC 1 cut(s) 467
BlsI GCNGC 2 cut(s) 227, 239
Bme1390I CCNGG 1 cut(s) 61
Bme18I GGWCC 1 cut(s) 380
BmeT110I CYCGRG 1 cut(s) 421
BmgT120I GGNCC 3 cut(s) 54, 380, 440
BmiI GGNNCC 2 cut(s) 40, 55
BmrFI CCNGG 1 cut(s) 61
BmsI GCATC 2 cut(s) 108, 306
Bpu1102I GCTNAGC 1 cut(s) 467
BpuEI CTTGAG 1 cut(s) 443
BpuMI CCSGG 1 cut(s) 61
BsaJI CCNNGG 1 cut(s) 200
BseDI CCNNGG 1 cut(s) 200
BseMII CTCAG 2 cut(s) 458, 477
BseXI GCAGC 2 cut(s) 237, 249
BshFI GGCC 2 cut(s) 56, 441
BsiHKCI CYCGRG 1 cut(s) 421
BsiSI CCGG 1 cut(s) 60
BslFI GGGAC 1 cut(s) 76
BsmAI GTCTC 1 cut(s) 250
BsmFI GGGAC 1 cut(s) 76
BsnI GGCC 2 cut(s) 56, 441
BsoBI CYCGRG 1 cut(s) 421
Bsp1286I GDGCHC 1 cut(s) 422
Bsp143I GATC 1 cut(s) 38
Bsp1720I GCTNAGC 1 cut(s) 467
BspANI GGCC 2 cut(s) 56, 441
BspCNI CTCAG 2 cut(s) 459, 478
BspLI GGNNCC 2 cut(s) 40, 55
BspPI GGATC 2 cut(s) 33, 46
BssECI CCNNGG 1 cut(s) 200
BssMI GATC 1 cut(s) 38
BssT1I CCWWGG 1 cut(s) 200
Bst4CI ACNGT 2 cut(s) 67, 154
BstC8I GCNNGC 2 cut(s) 223, 439
BstDEI CTNAG 2 cut(s) 467, 486
BstKTI GATC 1 cut(s) 41
BstMAI GTCTC 1 cut(s) 250
BstMBI GATC 1 cut(s) 38
BstMWI GCNNNNNNNGC 2 cut(s) 234, 463
BstSCI CCNGG 1 cut(s) 59
BstSFI CTRYAG 1 cut(s) 123
BstV1I GCAGC 2 cut(s) 237, 249
BstX2I RGATCY 1 cut(s) 38
BstYI RGATCY 1 cut(s) 38
BsuRI GGCC 2 cut(s) 56, 441
BtsI GCAGTG 1 cut(s) 235
BtsIMutI CAGTG 1 cut(s) 235
Cac8I GCNNGC 2 cut(s) 223, 439
CaiI CAGNNNCTG 1 cut(s) 158
Cfr13I GGNCC 3 cut(s) 54, 380, 440
CviAII CATG 2 cut(s) 171, 247
DdeI CTNAG 2 cut(s) 467, 486
DpnI GATC 1 cut(s) 40
DpnII GATC 1 cut(s) 38
Eco130I CCWWGG 1 cut(s) 200
Eco24I GRGCYC 1 cut(s) 422
Eco47I GGWCC 1 cut(s) 380
Eco88I CYCGRG 1 cut(s) 421
EcoO109I RGGNCCY 1 cut(s) 380
EcoT14I CCWWGG 1 cut(s) 200
EcoT38I GRGCYC 1 cut(s) 422
ErhI CCWWGG 1 cut(s) 200
FaeI CATG 2 cut(s) 174, 250
FaiI YATR 6 cut(s) 23, 125, 172, 248, 330, 341
FalI AAGNNNNNCTT 2 cut(s) 455, 487
FaqI GGGAC 1 cut(s) 76
FatI CATG 2 cut(s) 170, 246
Fnu4HI GCNGC 2 cut(s) 226, 238
FriOI GRGCYC 1 cut(s) 422
Fsp4HI GCNGC 2 cut(s) 226, 238
FspBI CTAG 2 cut(s) 92, 303
GluI GCNGC 2 cut(s) 226, 238
HaeIII GGCC 2 cut(s) 56, 441
HapII CCGG 1 cut(s) 60
Hin1II CATG 2 cut(s) 174, 250
HindIII AAGCTT 1 cut(s) 11
HinfI GANTC 4 cut(s) 95, 250, 323, 451
HpaII CCGG 1 cut(s) 60
Hpy166II GTNNAC 1 cut(s) 403
Hpy188I TCNGA 6 cut(s) 9, 117, 214, 255, 294, 487
Hpy188III TCNNGA 3 cut(s) 135, 313, 460
Hpy8I GTNNAC 1 cut(s) 403
HpyCH4III ACNGT 2 cut(s) 67, 154
HpyF10VI GCNNNNNNNGC 2 cut(s) 234, 463
HpyF3I CTNAG 2 cut(s) 467, 486
Hsp92II CATG 2 cut(s) 174, 250
Kzo9I GATC 1 cut(s) 38
LpnPI CCDG 8 cut(s) 31, 73, 171, 235, 276, 287, 423, 456
Lsp1109I GCAGC 2 cut(s) 237, 249
LweI GCATC 2 cut(s) 108, 306
MaeI CTAG 2 cut(s) 92, 303
MaeIII GTNAC 1 cut(s) 445
MalI GATC 1 cut(s) 40
MboI GATC 1 cut(s) 38
MboII GAAGA 1 cut(s) 123
MflI RGATCY 1 cut(s) 38
MhlI GDGCHC 1 cut(s) 422
MluCI AATT 1 cut(s) 138
MlyI GAGTC 2 cut(s) 89, 317
MnlI CCTC 2 cut(s) 29, 123
MseI TTAA 1 cut(s) 141
MspI CCGG 1 cut(s) 60
MspR9I CCNGG 1 cut(s) 61
MwoI GCNNNNNNNGC 2 cut(s) 234, 463
NciI CCSGG 1 cut(s) 61
NdeII GATC 1 cut(s) 38
NlaIII CATG 2 cut(s) 174, 250
NlaIV GGNNCC 2 cut(s) 40, 55
PcsI WCGNNNNNNNCGW 1 cut(s) 428
PfeI GAWTC 2 cut(s) 250, 451
PkrI GCNGC 2 cut(s) 227, 239
PleI GAGTC 2 cut(s) 89, 317
PpsI GAGTC 2 cut(s) 89, 317
PpuMI RGGWCCY 1 cut(s) 380
Psp5II RGGWCCY 1 cut(s) 380
PspN4I GGNNCC 2 cut(s) 40, 55
PspPI GGNCC 3 cut(s) 54, 380, 440
PspPPI RGGWCCY 1 cut(s) 380
PstNI CAGNNNCTG 1 cut(s) 158
PsuI RGATCY 1 cut(s) 38
SaqAI TTAA 1 cut(s) 141
SatI GCNGC 2 cut(s) 226, 238
Sau3AI GATC 1 cut(s) 38
Sau96I GGNCC 3 cut(s) 54, 380, 440
SchI GAGTC 2 cut(s) 89, 317
ScrFI CCNGG 1 cut(s) 61
SduI GDGCHC 1 cut(s) 422
SfaNI GCATC 2 cut(s) 108, 306
SfcI CTRYAG 1 cut(s) 123
SinI GGWCC 1 cut(s) 380
SmlI CTYRAG 1 cut(s) 458
SmoI CTYRAG 1 cut(s) 458
SpeI ACTAGT 1 cut(s) 302
Sse9I AATT 1 cut(s) 138
SspMI CTAG 2 cut(s) 92, 303
StyD4I CCNGG 1 cut(s) 59
StyI CCWWGG 1 cut(s) 200
TaaI ACNGT 2 cut(s) 67, 154
TaqI TCGA 1 cut(s) 321
TasI AATT 1 cut(s) 138
TfiI GAWTC 2 cut(s) 250, 451
Tru1I TTAA 1 cut(s) 141
Tru9I TTAA 1 cut(s) 141
TscAI CASTG 1 cut(s) 235
TseI GCWGC 2 cut(s) 225, 237
TspDTI ATGAA 1 cut(s) 263
TspRI CASTG 1 cut(s) 235
VpaK11BI GGWCC 1 cut(s) 380
XspI CTAG 2 cut(s) 92, 303
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.