Rroxscaffold_4G00318540

NADH kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000004
OG0000832
Physical Location & Seq
Reverse (-)
44733677 .. 44735560
1884 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_4G00318540.1

Sequence Viewer

Length: 318 bp
ATGACTCCATTTCACGGTGAACGGTACCAGGTTTATCTTGATTCACTTTTAAAAGGTCCCATTAGTATCACGCTACGGCACCGGTTGCGGTGCCATGTTATTAGAGAAGCAGCTAAAAATGAGTACGAAACTGAAGGGGCAATACTTGTTTTAAATGAGGTTACAATTGACCGTGGGATATCATCATATCTCACAAATTTGGAATGCTATTGTGACAACTCTTTTGTCACATGCGTCCAAGGAGATGGGCTGATATTATCGACAACATCCGGCAAGATCGCCATTATAGTTGGATCCATACATGCATCCATTGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00760 ko01100 map00760 map01100
Pfam Domains
Protein Families
NAD_kinase

Protein Analysis

105

Amino Acids

11.59

Weight (kDa)

6.03

Isoelectric Point (pI)

20.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
NAD_kinase_C PF20143 51 - 94 6.7e-06 ATP-NAD kinase C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000832)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G21070 AT3G21070 AT3G21070 AT3G21070
fragaria_vesca FvH4_3g28510
malus_domestica MD03G1172500.v1.1 MD11G1190400.v1.1
prunus_persica Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1 Prupe.4G254100_v2.0.a1
pyrus_communis pycom03g12970 pycom11g16670
rosa_chinensis RchiOBHm_Chr5g0052801
rosa_laevigata RLG00000034795
rosa_multiflora Rmu_sc0004335.1_g000006 Rmu_sc0032421.1_g000001 Rmu_ssc0000311.1_g000025
rosa_roxburghii Rroxscaffold_1G00028620 Rroxscaffold_4G00318540
rosa_rugosa Rorug05G0269700 Rorug05G0269800
rosa_samantha Rh5AG341600 Rh5BG352300 Rh5CG379000 Rh5DG368700
rosa_wichuraiana Rw5G032210

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 24
AccB1I GGYRCC 3 cut(s) 24, 78, 90
AciI CCGC 1 cut(s) 88
AclWI GGATC 2 cut(s) 288, 301
AcsI RAATTY 1 cut(s) 196
AcuI CTGAAG 1 cut(s) 153
AfaI GTAC 2 cut(s) 26, 125
AfiI CCNNNNNNNGG 1 cut(s) 14
AgeI ACCGGT 1 cut(s) 81
AjnI CCWGG 1 cut(s) 27
AluBI AGCT 1 cut(s) 113
AluI AGCT 1 cut(s) 113
AlwI GGATC 2 cut(s) 288, 301
ApeKI GCWGC 1 cut(s) 110
ApoI RAATTY 1 cut(s) 196
ArsI GACNNNNNNTTYG 2 cut(s) 206, 238
AsiGI ACCGGT 1 cut(s) 81
Asp718I GGTACC 1 cut(s) 24
AspS9I GGNCC 1 cut(s) 56
AsuHPI GGTGA 1 cut(s) 29
AvaII GGWCC 1 cut(s) 56
BamHI GGATCC 1 cut(s) 293
BanI GGYRCC 3 cut(s) 24, 78, 90
BarI GAAGNNNNNNTAC 2 cut(s) 126, 158
BbvI GCAGC 1 cut(s) 122
BccI CCATC 1 cut(s) 239
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 29
BisI GCNGC 1 cut(s) 111
BlsI GCNGC 1 cut(s) 112
Bme1390I CCNGG 1 cut(s) 29
Bme18I GGWCC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 56
BmiI GGNNCC 5 cut(s) 26, 58, 80, 92, 295
BmrFI CCNGG 1 cut(s) 29
BmsI GCATC 1 cut(s) 314
BsaJI CCNNGG 2 cut(s) 172, 238
BsaWI WCCGGW 1 cut(s) 81
Bsc4I CCNNNNNNNGG 1 cut(s) 14
Bse118I RCCGGY 1 cut(s) 81
Bse3DI GCAATG 1 cut(s) 309
BseBI CCWGG 1 cut(s) 29
BseDI CCNNGG 2 cut(s) 172, 238
BseGI GGATG 2 cut(s) 266, 305
BseLI CCNNNNNNNGG 1 cut(s) 14
BseMI GCAATG 1 cut(s) 309
BseXI GCAGC 1 cut(s) 122
BshNI GGYRCC 3 cut(s) 24, 78, 90
BshTI ACCGGT 1 cut(s) 81
BsiSI CCGG 2 cut(s) 82, 270
BslFI GGGAC 1 cut(s) 42
BslI CCNNNNNNNGG 1 cut(s) 14
BsmFI GGGAC 1 cut(s) 42
BsmI GAATGC 1 cut(s) 209
Bsp143I GATC 2 cut(s) 276, 293
BspACI CCGC 1 cut(s) 88
BspLI GGNNCC 5 cut(s) 26, 58, 80, 92, 295
BspPI GGATC 2 cut(s) 288, 301
BspT107I GGYRCC 3 cut(s) 24, 78, 90
BsrDI GCAATG 1 cut(s) 309
BsrFI RCCGGY 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 81
BssECI CCNNGG 2 cut(s) 172, 238
BssMI GATC 2 cut(s) 276, 293
BssT1I CCWWGG 1 cut(s) 238
Bst2UI CCWGG 1 cut(s) 29
Bst4CI ACNGT 3 cut(s) 17, 24, 173
BstAPI GCANNNNNTGC 2 cut(s) 85, 311
BstDSI CCRYGG 1 cut(s) 172
BstF5I GGATG 2 cut(s) 266, 305
BstKTI GATC 2 cut(s) 279, 296
BstMBI GATC 2 cut(s) 276, 293
BstMWI GCNNNNNNNGC 2 cut(s) 85, 311
BstNI CCWGG 1 cut(s) 29
BstNSI RCATGY 2 cut(s) 234, 305
BstSCI CCNGG 1 cut(s) 27
BstV1I GCAGC 1 cut(s) 122
BstX2I RGATCY 1 cut(s) 293
BstXI CCANNNNNNTGG 1 cut(s) 245
BstYI RGATCY 1 cut(s) 293
BtgI CCRYGG 1 cut(s) 172
BtsCI GGATG 2 cut(s) 266, 305
Cfr10I RCCGGY 1 cut(s) 81
Cfr13I GGNCC 1 cut(s) 56
CseI GACGC 1 cut(s) 223
CsiI ACCWGGT 1 cut(s) 27
Csp6I GTAC 2 cut(s) 25, 124
CspAI ACCGGT 1 cut(s) 81
CviAII CATG 3 cut(s) 95, 231, 302
CviJI RGCY 2 cut(s) 113, 250
CviKI_1 RGCY 2 cut(s) 113, 250
CviQI GTAC 2 cut(s) 25, 124
DpnI GATC 2 cut(s) 278, 295
DpnII GATC 2 cut(s) 276, 293
DraI TTTAAA 2 cut(s) 51, 153
Eco130I CCWWGG 1 cut(s) 238
Eco32I GATATC 1 cut(s) 180
Eco47I GGWCC 1 cut(s) 56
Eco57I CTGAAG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 56
EcoRII CCWGG 1 cut(s) 27
EcoRV GATATC 1 cut(s) 180
EcoT14I CCWWGG 1 cut(s) 238
EcoT22I ATGCAT 1 cut(s) 307
ErhI CCWWGG 1 cut(s) 238
FaeI CATG 3 cut(s) 98, 234, 305
FaiI YATR 6 cut(s) 96, 187, 232, 287, 299, 303
FaqI GGGAC 1 cut(s) 42
FatI CATG 3 cut(s) 94, 230, 301
Fnu4HI GCNGC 1 cut(s) 111
FokI GGATG 2 cut(s) 253, 292
Fsp4HI GCNGC 1 cut(s) 111
GluI GCNGC 1 cut(s) 111
HapII CCGG 2 cut(s) 82, 270
HgaI GACGC 1 cut(s) 223
Hin1II CATG 3 cut(s) 98, 234, 305
HinfI GANTC 2 cut(s) 4, 41
HpaII CCGG 2 cut(s) 82, 270
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 20
Hpy188III TCNNGA 1 cut(s) 38
Hpy8I GTNNAC 1 cut(s) 20
HpyAV CCTTC 1 cut(s) 128
HpyCH4III ACNGT 3 cut(s) 17, 24, 173
HpyCH4V TGCA 1 cut(s) 305
HpyF10VI GCNNNNNNNGC 2 cut(s) 85, 311
Hsp92II CATG 3 cut(s) 98, 234, 305
KpnI GGTACC 1 cut(s) 28
Kzo9I GATC 2 cut(s) 276, 293
LpnPI CCDG 4 cut(s) 14, 41, 95, 283
Lsp1109I GCAGC 1 cut(s) 122
LweI GCATC 1 cut(s) 314
MabI ACCWGGT 1 cut(s) 27
MaeIII GTNAC 3 cut(s) 160, 212, 226
MalI GATC 2 cut(s) 278, 295
MboI GATC 2 cut(s) 276, 293
MfeI CAATTG 1 cut(s) 165
MflI RGATCY 1 cut(s) 293
MluCI AATT 2 cut(s) 165, 196
MmeI TCCRAC 1 cut(s) 271
MnlI CCTC 1 cut(s) 151
Mph1103I ATGCAT 1 cut(s) 307
MseI TTAA 3 cut(s) 50, 152, 316
MspI CCGG 2 cut(s) 82, 270
MspR9I CCNGG 1 cut(s) 29
MunI CAATTG 1 cut(s) 165
Mva1269I GAATGC 1 cut(s) 209
MvaI CCWGG 1 cut(s) 29
MwoI GCNNNNNNNGC 2 cut(s) 85, 311
NdeII GATC 2 cut(s) 276, 293
NlaIII CATG 3 cut(s) 98, 234, 305
NlaIV GGNNCC 5 cut(s) 26, 58, 80, 92, 295
NmuCI GTSAC 2 cut(s) 212, 226
NsiI ATGCAT 1 cut(s) 307
NspI RCATGY 2 cut(s) 234, 305
PctI GAATGC 1 cut(s) 209
PfeI GAWTC 1 cut(s) 41
PinAI ACCGGT 1 cut(s) 81
PkrI GCNGC 1 cut(s) 112
PpuMI RGGWCCY 1 cut(s) 56
Psp5II RGGWCCY 1 cut(s) 56
Psp6I CCWGG 1 cut(s) 27
PspGI CCWGG 1 cut(s) 27
PspN4I GGNNCC 5 cut(s) 26, 58, 80, 92, 295
PspPI GGNCC 1 cut(s) 56
PspPPI RGGWCCY 1 cut(s) 56
PsuI RGATCY 1 cut(s) 293
RsaI GTAC 2 cut(s) 26, 125
RsaNI GTAC 2 cut(s) 25, 124
SaqAI TTAA 3 cut(s) 50, 152, 316
SatI GCNGC 1 cut(s) 111
Sau3AI GATC 2 cut(s) 276, 293
Sau96I GGNCC 1 cut(s) 56
ScrFI CCNGG 1 cut(s) 29
SetI ASST 4 cut(s) 33, 58, 115, 162
SexAI ACCWGGT 1 cut(s) 27
SfaNI GCATC 1 cut(s) 314
SinI GGWCC 1 cut(s) 56
Sse9I AATT 2 cut(s) 165, 196
SsiI CCGC 1 cut(s) 88
StyD4I CCNGG 1 cut(s) 27
StyI CCWWGG 1 cut(s) 238
TaaI ACNGT 3 cut(s) 17, 24, 173
TaqI TCGA 1 cut(s) 260
TasI AATT 2 cut(s) 165, 196
TfiI GAWTC 1 cut(s) 41
Tru1I TTAA 3 cut(s) 50, 152, 316
Tru9I TTAA 3 cut(s) 50, 152, 316
TseFI GTSAC 2 cut(s) 212, 226
TseI GCWGC 1 cut(s) 110
Tsp45I GTSAC 2 cut(s) 212, 226
VpaK11BI GGWCC 1 cut(s) 56
XapI RAATTY 1 cut(s) 196
XceI RCATGY 2 cut(s) 234, 305
Zsp2I ATGCAT 1 cut(s) 307
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.