Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004647.1

Orthogroup ID

OG0007142

Physical Location & Seq

Genomic Coordinates Reverse (-)

36727 .. 38265

Gene Structure 1539 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1539 bp

ctgcaaatctcccaaatccatggctctctccaaaccctccttcctcacccacctcaaaaccctagccaaacccccccaccgccacctccgccgcccctcattcctctctctgcgttccctctccttcgccacccccgaagacgccgccgccgaccgacgccgccgcaagcgccgcctccgcatcgagcccccaatctcccccctccaccgctcccaacaacaacccccaaaaccctaaccctaactcccccaagctccgcgaactcgtctccgctctctccagcaaccacctcaacctccacaacaaaatcctcaccctcggacccggttgtgtatcactatctgatggaggggtgcgtgaggaattcggattcggatggggtgtttgggctttacgaggagttgaaggagaagctgggaggggaggtggaggatggggttgtgattgggagtttgatgaaggggtatttcatcaaggaaatggagaaggaggcaatggagtgttatgaacaggcttcgaaggtgaagatgaatgcggtggcgtataactcggtgttggaggcgttgtgtgggtatgggaagtttgatgaggcattgaagttgtttgataggatgagggaggagcattccccgcctaggaggttcacggtgaatttggggagctttaatgtgatggcggacgggtattgtgcgcaggggaggtttaaggaggcggttgaggtttttaggaagatgggggagtatagatgtgacccggatacgttgtcgtttaataatttgattcagcatttgtgtagcaatgggatgctgagtgaggctgaggaggtttatggggagatgggggagaagggggtgaacccggatgagtacacttactcgttgttgatggatacttgttttgaggagaataggcctgatgatgcggctgagtattttaggaaaatggtggatgagaagttgaggccgaatttggctgtttatagtaggttggctgatgggttggttaaggtggggaaggttgatgaggcgaaatcgttttttgatcttatggggaagaagctgaagatggatgttgcgagctatcagtttataatgaaggcattgagtgatgcagggaaatttgatgaggtgcttaatgtggtggatacattgttggaggacgaatggattgaattgaatgaggagttgcaggagttcatcaaaggggagctgagaaaggatgggagagaggatgaattgggaaagctgatagaggagaaggaaaggctgaaggctgaggctaaggcgaaggagattgaggaagcagaagcagcaaagagaagtagaagtgctgctgtctcctcgttacttccgtctagtttgtttgggaagaaagagacagggtctacagaggccactgaaaaagtaggtgaagctgcctcagcttctgtggaggctgctccagctgctgacacaaactcggcagagcaaccagtcaaaggtgaaagttcagatgaagaatccaaaagcgagggtgcaaacgagcaggtagtggcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0003006 GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006349 GO:0006725 GO:0006807 GO:0007275 GO:0008144 GO:0008150 GO:0008152 GO:0009451 GO:0009507 GO:0009536 GO:0009790 GO:0009791 GO:0009793 GO:0009888 GO:0009960 GO:0009987 GO:0010154 GO:0010468 GO:0016070 GO:0016787 GO:0016788 GO:0017076 GO:0019222 GO:0022414 GO:0030554 GO:0032501 GO:0032502 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0040029 GO:0043167 GO:0043168 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0060255 GO:0061458 GO:0065007 GO:0071514 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:0097367 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2 PPR_3

Protein Analysis

512

Amino Acids

56.55

Weight (kDa)

4.99

Isoelectric Point (pI)

50.17

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_1	PF12854	175 - 206	2.7e-06	PPR repeat
PPR_2	PF13041	178 - 217	1.1e-07	PPR repeat family
PPR	PF01535	180 - 208	1.2e-06	PPR repeat
PPR_2	PF13041	220 - 258	2.3e-07	PPR repeat family
PPR	PF01535	221 - 250	1.6e-06	PPR repeat
PPR_1	PF12854	250 - 280	1.3e-06	PPR repeat
PPR_2	PF13041	252 - 299	3e-15	PPR repeat family
PPR	PF01535	256 - 285	1.5e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007142)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G49240
fragaria_vesca	FvH4_2g09580
malus_domestica	MD07G1288700.v1.1
prunus_persica	Prupe.2G310200_v2.0.a1
pyrus_communis	pycom01g22880
rosa_chinensis	RchiOBHm_Chr1g0380631
rosa_laevigata	RLG00000026280
rosa_multiflora	Rmu_sc0004647.1_g000010 Rmu_sc0020141.1_g000001 Rmu_sc0020141.1_g000002 Rmu_sc0021483.1_g000003 Rmu_ssc0000015.1_g000013
rosa_roxburghii	Rroxscaffold_4G00279120
rosa_rugosa	Rorug01G0122900 Rorug01G0423100
rosa_samantha	Rh1AG447400 Rh1BG113000 Rh1BG151000 Rh1BG402900 Rh1CG417300 Rh1DG182800 Rh1DG433200 Rh7CG247500
rosa_wichuraiana	Rw1G038940 Rw7G019950

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1091
Acc16I	TGCGCA	1 cut(s)	693
Acc36I	ACCTGC	1 cut(s)	1516
AccBSI	CCGCTC	2 cut(s)	211, 274
AccI	GTMKAC	1 cut(s)	1385
AccII	CGCG	1 cut(s)	260
AcsI	RAATTY	4 cut(s)	364, 652, 967, 1118
AcuI	CTGAAG	2 cut(s)	1082, 1289
AcyI	GRCGYC	2 cut(s)	142, 158
AfaI	GTAC	1 cut(s)	869
AfiI	CCNNNNNNNGG	2 cut(s)	636, 1478
AgsI	TTSAA	4 cut(s)	406, 598, 1172, 1177
AjuI	GAANNNNNNNTTGG	2 cut(s)	24, 56
Alw26I	GTCTC	3 cut(s)	273, 1342, 1370
AlwNI	CAGNNNCTG	2 cut(s)	1427, 1448
AoxI	GGCC	3 cut(s)	911, 962, 1392
ApeKI	GCWGC	5 cut(s)	1310, 1331, 1415, 1436, 1445
ApoI	RAATTY	4 cut(s)	364, 652, 967, 1118
AspA2I	CCTAGG	1 cut(s)	635
AspLEI	GCGC	2 cut(s)	172, 694
AspS9I	GGNCC	1 cut(s)	322
AsuC2I	CCSGG	3 cut(s)	326, 755, 860
AsuHPI	GGTGA	7 cut(s)	38, 306, 535, 661, 865, 1421, 1493
AsuII	TTCGAA	1 cut(s)	518
AvaII	GGWCC	1 cut(s)	322
AvrII	CCTAGG	1 cut(s)	635
BanII	GRGCYC	1 cut(s)	190
BbsI	GAAGAC	1 cut(s)	145
BbvCI	CCTCAGC	3 cut(s)	819, 1275, 1420
BbvI	GCAGC	5 cut(s)	1318, 1322, 1402, 1423, 1432
BciVI	GTATCC	3 cut(s)	751, 883, 1138
BcnI	CCSGG	3 cut(s)	326, 755, 860
BcoDI	GTCTC	3 cut(s)	273, 1342, 1370
BfaI	CTAG	3 cut(s)	63, 636, 1356
BfmI	CTRYAG	1 cut(s)	1386
BfoI	RGCGCY	1 cut(s)	173
BfuAI	ACCTGC	1 cut(s)	1516
BfuI	GTATCC	3 cut(s)	751, 883, 1138
BlnI	CCTAGG	1 cut(s)	635
Bme1390I	CCNGG	3 cut(s)	326, 755, 860
Bme18I	GGWCC	1 cut(s)	322
BmgT120I	GGNCC	1 cut(s)	322
BmiI	GGNNCC	1 cut(s)	324
BmrFI	CCNGG	3 cut(s)	326, 755, 860
BmsI	GCATC	4 cut(s)	190, 795, 910, 1099
BpiI	GAAGAC	1 cut(s)	145
BpmI	CTGGAG	2 cut(s)	264, 1425
Bpu10I	CCTNAGC	4 cut(s)	819, 1275, 1281, 1420
Bpu14I	TTCGAA	1 cut(s)	518
BpuMI	CCSGG	3 cut(s)	326, 755, 860
BsaHI	GRCGYC	2 cut(s)	142, 158
BsaJI	CCNNGG	3 cut(s)	19, 318, 635
BsaXI	ACNNNNNCTCC	6 cut(s)	229, 259, 411, 441, 551, 581
Bsc4I	CCNNNNNNNGG	2 cut(s)	636, 1478
Bse1I	ACTGG	1 cut(s)	1472
Bse3DI	GCAATG	2 cut(s)	501, 805
BseDI	CCNNGG	3 cut(s)	19, 318, 635
BseGI	GGATG	9 cut(s)	382, 439, 618, 810, 868, 955, 1075, 1225, 1237
BseLI	CCNNNNNNNGG	2 cut(s)	636, 1478
BseMI	GCAATG	2 cut(s)	501, 805
BseMII	CTCAG	6 cut(s)	800, 810, 918, 1202, 1266, 1434
BseNI	ACTGG	1 cut(s)	1472
BseRI	GAGGAG	7 cut(s)	413, 635, 836, 917, 1196, 1268, 1330
BseXI	GCAGC	5 cut(s)	1318, 1322, 1402, 1423, 1432
BseYI	CCCAGC	1 cut(s)	415
Bsh1236I	CGCG	1 cut(s)	260
Bsh1285I	CGRYCG	1 cut(s)	155
BshFI	GGCC	3 cut(s)	913, 964, 1394
BsiEI	CGRYCG	1 cut(s)	155
BsiSI	CCGG	3 cut(s)	326, 755, 860
BslI	CCNNNNNNNGG	2 cut(s)	636, 1478
BsmAI	GTCTC	3 cut(s)	273, 1342, 1370
BsmBI	CGTCTC	1 cut(s)	273
BsmI	GAATGC	2 cut(s)	538, 625
BsnI	GGCC	3 cut(s)	913, 964, 1394
Bsp119I	TTCGAA	1 cut(s)	518
Bsp1286I	GDGCHC	1 cut(s)	190
Bsp143I	GATC	1 cut(s)	1042
Bsp19I	CCATGG	1 cut(s)	19
BspANI	GGCC	3 cut(s)	913, 964, 1394
BspCNI	CTCAG	6 cut(s)	801, 811, 919, 1203, 1267, 1433
BspFNI	CGCG	1 cut(s)	260
BspLI	GGNNCC	1 cut(s)	324
BspMI	ACCTGC	1 cut(s)	1516
BspT104I	TTCGAA	1 cut(s)	518
BsrBI	CCGCTC	2 cut(s)	211, 274
BsrDI	GCAATG	2 cut(s)	501, 805
BsrI	ACTGG	1 cut(s)	1472
BssECI	CCNNGG	3 cut(s)	19, 318, 635
BssMI	GATC	1 cut(s)	1042
BssNI	GRCGYC	2 cut(s)	142, 158
BssT1I	CCWWGG	2 cut(s)	19, 635
Bst4CI	ACNGT	1 cut(s)	649
BstACI	GRCGYC	2 cut(s)	142, 158
BstBI	TTCGAA	1 cut(s)	518
BstC8I	GCNNGC	2 cut(s)	168, 1078
BstDEI	CTNAG	7 cut(s)	809, 819, 927, 1211, 1275, 1281, 1420
BstDSI	CCRYGG	1 cut(s)	19
BstF5I	GGATG	9 cut(s)	382, 439, 618, 810, 868, 955, 1075, 1225, 1237
BstFNI	CGCG	1 cut(s)	260
BstH2I	RGCGCY	1 cut(s)	173
BstHHI	GCGC	2 cut(s)	172, 694
BstKTI	GATC	1 cut(s)	1045
BstMAI	GTCTC	3 cut(s)	273, 1342, 1370
BstMBI	GATC	1 cut(s)	1042
BstMCI	CGRYCG	1 cut(s)	155
BstMWI	GCNNNNNNNGC	9 cut(s)	88, 169, 172, 178, 631, 1310, 1421, 1442, 1445
BstSCI	CCNGG	3 cut(s)	324, 753, 858
BstSFI	CTRYAG	1 cut(s)	1386
BstUI	CGCG	1 cut(s)	260
BstV1I	GCAGC	5 cut(s)	1318, 1322, 1402, 1423, 1432
BstV2I	GAAGAC	1 cut(s)	145
BstXI	CCANNNNNNTGG	1 cut(s)	20
BsuI	GTATCC	3 cut(s)	751, 883, 1138
BsuRI	GGCC	3 cut(s)	913, 964, 1394
BtgI	CCRYGG	1 cut(s)	19
BtsCI	GGATG	9 cut(s)	382, 439, 618, 810, 868, 955, 1075, 1225, 1237
BtsIMutI	CAGTG	1 cut(s)	1395
BveI	ACCTGC	1 cut(s)	1516
Cac8I	GCNNGC	2 cut(s)	168, 1078
CaiI	CAGNNNCTG	2 cut(s)	1427, 1448
CfoI	GCGC	2 cut(s)	172, 694
Cfr13I	GGNCC	1 cut(s)	322
CseI	GACGC	2 cut(s)	150, 166
Csp6I	GTAC	1 cut(s)	868
CviAII	CATG	1 cut(s)	20
CviQI	GTAC	1 cut(s)	868
DdeI	CTNAG	7 cut(s)	809, 819, 927, 1211, 1275, 1281, 1420
DpnI	GATC	1 cut(s)	1044
DpnII	GATC	1 cut(s)	1042
EciI	GGCGGA	2 cut(s)	78, 692
Eco130I	CCWWGG	2 cut(s)	19, 635
Eco147I	AGGCCT	1 cut(s)	913
Eco24I	GRGCYC	1 cut(s)	190
Eco47I	GGWCC	1 cut(s)	322
Eco57I	CTGAAG	2 cut(s)	1082, 1289
EcoRI	GAATTC	1 cut(s)	364
EcoT14I	CCWWGG	2 cut(s)	19, 635
EcoT38I	GRGCYC	1 cut(s)	190
ErhI	CCWWGG	2 cut(s)	19, 635
Esp3I	CGTCTC	1 cut(s)	273
FaeI	CATG	1 cut(s)	23
FaiI	YATR	9 cut(s)	21, 507, 546, 576, 744, 831, 981, 1049, 1091
FatI	CATG	1 cut(s)	19
FauI	CCCGC	1 cut(s)	639
FblI	GTMKAC	1 cut(s)	1385
FokI	GGATG	9 cut(s)	389, 446, 625, 817, 875, 962, 1082, 1232, 1244
FriOI	GRGCYC	1 cut(s)	190
FspBI	CTAG	3 cut(s)	63, 636, 1356
FspI	TGCGCA	1 cut(s)	693
GlaI	GCGC	2 cut(s)	171, 693
GsaI	CCCAGC	1 cut(s)	419
GsuI	CTGGAG	2 cut(s)	264, 1425
HaeII	RGCGCY	1 cut(s)	173
HaeIII	GGCC	3 cut(s)	913, 964, 1394
HapII	CCGG	3 cut(s)	326, 755, 860
HgaI	GACGC	2 cut(s)	150, 166
HhaI	GCGC	2 cut(s)	172, 694
Hin1I	GRCGYC	2 cut(s)	142, 158
Hin1II	CATG	1 cut(s)	23
Hin6I	GCGC	2 cut(s)	170, 692
HinP1I	GCGC	2 cut(s)	170, 692
HinfI	GANTC	3 cut(s)	371, 781, 1499
HpaII	CCGG	3 cut(s)	326, 755, 860
HphI	GGTGA	7 cut(s)	38, 306, 535, 661, 865, 1421, 1493
Hpy166II	GTNNAC	4 cut(s)	645, 856, 870, 1386
Hpy188I	TCNGA	5 cut(s)	322, 345, 370, 376, 1492
Hpy8I	GTNNAC	4 cut(s)	645, 856, 870, 1386
Hpy99I	CGWCG	1 cut(s)	160
HpyCH4III	ACNGT	1 cut(s)	649
HpyCH4IV	ACGT	1 cut(s)	761
HpyCH4V	TGCA	4 cut(s)	4, 1112, 1189, 1517
HpyF10VI	GCNNNNNNNGC	9 cut(s)	88, 169, 172, 178, 631, 1310, 1421, 1442, 1445
HpyF3I	CTNAG	7 cut(s)	809, 819, 927, 1211, 1275, 1281, 1420
HpySE526I	ACGT	1 cut(s)	761
Hsp92I	GRCGYC	2 cut(s)	142, 158
Hsp92II	CATG	1 cut(s)	23
HspAI	GCGC	2 cut(s)	170, 692
Kzo9I	GATC	1 cut(s)	1042
LmnI	GCTCC	6 cut(s)	216, 260, 622, 660, 1207, 1444
Lsp1109I	GCAGC	5 cut(s)	1318, 1322, 1402, 1423, 1432
LweI	GCATC	4 cut(s)	190, 795, 910, 1099
MaeI	CTAG	3 cut(s)	63, 636, 1356
MaeII	ACGT	1 cut(s)	761
MaeIII	GTNAC	2 cut(s)	749, 1344
MalI	GATC	1 cut(s)	1044
MbiI	CCGCTC	2 cut(s)	211, 274
MboI	GATC	1 cut(s)	1042
MboII	GAAGA	7 cut(s)	150, 538, 742, 1066, 1075, 1381, 1508
MhlI	GDGCHC	1 cut(s)	190
MluCI	AATT	7 cut(s)	364, 652, 775, 967, 1118, 1172, 1235
MmeI	TCCRAC	2 cut(s)	537, 1134
MseI	TTAA	5 cut(s)	666, 705, 771, 1005, 1134
MspA1I	CMGCKG	1 cut(s)	1445
MspI	CCGG	3 cut(s)	326, 755, 860
MspR9I	CCNGG	3 cut(s)	326, 755, 860
Mva1269I	GAATGC	2 cut(s)	538, 625
MvnI	CGCG	1 cut(s)	260
MwoI	GCNNNNNNNGC	9 cut(s)	88, 169, 172, 178, 631, 1310, 1421, 1442, 1445
NciI	CCSGG	3 cut(s)	326, 755, 860
NcoI	CCATGG	1 cut(s)	19
NdeII	GATC	1 cut(s)	1042
NlaIII	CATG	1 cut(s)	23
NlaIV	GGNNCC	1 cut(s)	324
NmeAIII	GCCGAG	1 cut(s)	1439
NmuCI	GTSAC	1 cut(s)	749
NsbI	TGCGCA	1 cut(s)	693
NspV	TTCGAA	1 cut(s)	518
PceI	AGGCCT	1 cut(s)	913
PcsI	WCGNNNNNNNCGW	3 cut(s)	133, 148, 1349
PctI	GAATGC	2 cut(s)	538, 625
PfeI	GAWTC	3 cut(s)	371, 781, 1499
PflFI	GACNNNGTC	1 cut(s)	1381
PsiI	TTATAA	1 cut(s)	1091
PspFI	CCCAGC	1 cut(s)	415
PspN4I	GGNNCC	1 cut(s)	324
PspPI	GGNCC	1 cut(s)	322
PstNI	CAGNNNCTG	2 cut(s)	1427, 1448
PsyI	GACNNNGTC	1 cut(s)	1381
PvuII	CAGCTG	1 cut(s)	1445
RsaI	GTAC	1 cut(s)	869
RsaNI	GTAC	1 cut(s)	868
SaqAI	TTAA	5 cut(s)	666, 705, 771, 1005, 1134
Sau3AI	GATC	1 cut(s)	1042
Sau96I	GGNCC	1 cut(s)	322
ScrFI	CCNGG	3 cut(s)	326, 755, 860
SduI	GDGCHC	1 cut(s)	190
SfaNI	GCATC	4 cut(s)	190, 795, 910, 1099
SfcI	CTRYAG	1 cut(s)	1386
SfuI	TTCGAA	1 cut(s)	518
SinI	GGWCC	1 cut(s)	322
Sse9I	AATT	7 cut(s)	364, 652, 775, 967, 1118, 1172, 1235
SseBI	AGGCCT	1 cut(s)	913
SspMI	CTAG	3 cut(s)	63, 636, 1356
StuI	AGGCCT	1 cut(s)	913
StyD4I	CCNGG	3 cut(s)	324, 753, 858
StyI	CCWWGG	2 cut(s)	19, 635
TaaI	ACNGT	1 cut(s)	649
TaiI	ACGT	1 cut(s)	764
TaqI	TCGA	2 cut(s)	184, 518
TaqII	GACCGA	1 cut(s)	169
TasI	AATT	7 cut(s)	364, 652, 775, 967, 1118, 1172, 1235
TatI	WGTACW	1 cut(s)	867
TauI	GCSGC	7 cut(s)	94, 147, 150, 163, 166, 175, 926
TfiI	GAWTC	3 cut(s)	371, 781, 1499
Tru1I	TTAA	5 cut(s)	666, 705, 771, 1005, 1134
Tru9I	TTAA	5 cut(s)	666, 705, 771, 1005, 1134
TscAI	CASTG	1 cut(s)	1402
TseFI	GTSAC	1 cut(s)	749
TseI	GCWGC	5 cut(s)	1310, 1331, 1415, 1436, 1445
Tsp45I	GTSAC	1 cut(s)	749
TspDTI	ATGAA	8 cut(s)	460, 473, 522, 545, 1109, 1186, 1248, 1509
TspGWI	ACGGA	1 cut(s)	1341
TspRI	CASTG	1 cut(s)	1402
Tth111I	GACNNNGTC	1 cut(s)	1381
VpaK11BI	GGWCC	1 cut(s)	322
XapI	RAATTY	4 cut(s)	364, 652, 967, 1118
XmaJI	CCTAGG	1 cut(s)	635
XmiI	GTMKAC	1 cut(s)	1385
XspI	CTAG	3 cut(s)	63, 636, 1356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.