Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004684.1

Orthogroup ID

OG0014648

Physical Location & Seq

Genomic Coordinates Reverse (-)

95032 .. 96087

Gene Structure 1056 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 984 bp

atggcgttctcctcaccctttatcgtacccgattcgccagaccaagtcaaagatgcttgtgacgagaacgaagctaattccaaggacgttatcatgtccaacaagaccaccgagcagacaaaaaagaagaggaagaagaagaagaagaagacaaggcttgcagaggaaacgaagcaagtcgacatcaacggacctgaaaaagaaaatcaatctgatgatgaggaacaagacccgaaaaacaagagggtgaaagtagcagcttcaccggctccagaagagaacaaatccaacaccaaatcgtcttgtgctggaataacatggagcaaagacgatgagattgttattttgggcggcctgatctcgtttcagggagacgagagagagtataaaagcaaggaattttatgaatacataaagagtcgcctcagccagggagatttgaaccaagtaagggacaaagtaaaatcccttaagagaaaatatatggggatgcagaatcagacgttcttagaaactttccagaaggggcgttaccaagagatgaaggtgttcaacttgtccaaaatttattggggtaagtttgatgctgctgatgatgaaaaattaaacaacgagaaggaggaaacaatactagtgcaggtggctgacgatgaggaggaggagaatgatgaggaggaggaggaaaaggaggaggaaacaatacaagtgaaggtggcggacgatgagaagatgattgatgatgatgatcagagcaagccaaagattagtggatttcttcgtcgtggtttgagagaccattttcggagagagcactttgatcgcaggtgggctgaggagcaggatctcgaggacttggagaacaagtggaaggcatacaaaattgctgaggccgaatcgaatttggccgaagcccattttcgtaaagcgctcaactgctgcactctcaaggcctaccggatctttggttatcaaaataattcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005730 GO:0005737 GO:0005829 GO:0006082 GO:0006355 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016143 GO:0019219 GO:0019222 GO:0019748 GO:0019757 GO:0019760 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043436 GO:0043565 GO:0044212 GO:0044237 GO:0044281 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0070013 GO:0071704 GO:0080090 GO:0097159 GO:1901135 GO:1901363 GO:1901564 GO:1901657 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF573

Protein Analysis

327

Amino Acids

38.21

Weight (kDa)

5.1

Isoelectric Point (pI)

55.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GeBP-like_DBD	PF04504	106 - 192	2.1e-14	Glabrous-enhancer-binding protein-like family, DBD domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014648)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_1g28310
rosa_chinensis	RchiOBHm_Chr3g0496791
rosa_laevigata	RLG00000008047 RLG00000022502 RLG00000027947
rosa_multiflora	Rmu_sc0004684.1_g000029 Rmu_sc0013168.1_g000001 Rmu_sc0013725.1_g000002
rosa_roxburghii	Rroxscaffold_2G00136000 Rroxscaffold_6G00388700
rosa_rugosa	Rorug03G0287300
rosa_samantha	Rh3AG331500 Rh3BG343000 Rh3BG368000 Rh3CG364400 Rh3DG367600 Rh7DG330000

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	2 cut(s)	628, 813
Acc36I	ACCTGC	2 cut(s)	628, 813
AccI	GTMKAC	1 cut(s)	180
AciI	CCGC	2 cut(s)	351, 716
AclWI	GGATC	2 cut(s)	849, 965
AcoI	YGGCCR	1 cut(s)	903
AcsI	RAATTY	3 cut(s)	398, 564, 898
AfaI	GTAC	1 cut(s)	27
AfeI	AGCGCT	1 cut(s)	927
AfiI	CCNNNNNNNGG	2 cut(s)	430, 451
AflII	CTTAAG	1 cut(s)	470
AgsI	TTSAA	2 cut(s)	442, 553
AhlI	ACTAGT	1 cut(s)	631
AjnI	CCWGG	1 cut(s)	429
AluBI	AGCT	2 cut(s)	74, 260
AluI	AGCT	2 cut(s)	74, 260
Alw21I	GWGCWC	1 cut(s)	813
Alw26I	GTCTC	2 cut(s)	366, 786
AlwI	GGATC	2 cut(s)	849, 965
Ama87I	CYCGRG	1 cut(s)	845
Aor51HI	AGCGCT	1 cut(s)	927
AoxI	GGCC	4 cut(s)	352, 888, 903, 948
ApeKI	GCWGC	3 cut(s)	257, 587, 936
ApoI	RAATTY	3 cut(s)	398, 564, 898
Asp700I	GAANNNNTTC	1 cut(s)	548
AspLEI	GCGC	1 cut(s)	928
AspS9I	GGNCC	1 cut(s)	191
AsuHPI	GGTGA	3 cut(s)	6, 255, 259
AvaI	CYCGRG	1 cut(s)	845
AvaII	GGWCC	1 cut(s)	191
BarI	GAAGNNNNNNTAC	2 cut(s)	515, 547
BbsI	GAAGAC	1 cut(s)	155
Bbv12I	GWGCWC	1 cut(s)	813
BbvCI	CCTCAGC	3 cut(s)	425, 831, 885
BbvI	GCAGC	3 cut(s)	269, 574, 923
BcgI	CGANNNNNNTGC	2 cut(s)	800, 834
BciT130I	CCWGG	1 cut(s)	431
BclI	TGATCA	1 cut(s)	745
BcoDI	GTCTC	2 cut(s)	366, 786
BcuI	ACTAGT	1 cut(s)	631
BfaI	CTAG	2 cut(s)	632, 982
BfoI	RGCGCY	1 cut(s)	929
BfrI	CTTAAG	1 cut(s)	470
BfuAI	ACCTGC	2 cut(s)	628, 813
BisI	GCNGC	4 cut(s)	258, 352, 588, 937
BlsI	GCNGC	4 cut(s)	259, 353, 589, 938
Bme1390I	CCNGG	1 cut(s)	431
Bme18I	GGWCC	1 cut(s)	191
BmeT110I	CYCGRG	1 cut(s)	845
BmgT120I	GGNCC	1 cut(s)	191
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	1 cut(s)	431
BmsI	GCATC	3 cut(s)	43, 480, 574
BpiI	GAAGAC	1 cut(s)	155
BpmI	CTGGAG	1 cut(s)	255
Bpu10I	CCTNAGC	3 cut(s)	425, 831, 885
BpuEI	CTTGAG	1 cut(s)	929
BsaBI	GATNNNNATC	1 cut(s)	744
BsaI	GGTCTC	1 cut(s)	786
BsaJI	CCNNGG	2 cut(s)	81, 430
BsaWI	WCCGGW	1 cut(s)	954
BsaXI	ACNNNNNCTCC	2 cut(s)	848, 878
Bsc4I	CCNNNNNNNGG	2 cut(s)	430, 451
Bse118I	RCCGGY	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	744
BseBI	CCWGG	1 cut(s)	431
BseDI	CCNNGG	2 cut(s)	81, 430
BseGI	GGATG	1 cut(s)	495
BseJI	GATNNNNATC	1 cut(s)	744
BseLI	CCNNNNNNNGG	2 cut(s)	430, 451
BseMII	CTCAG	3 cut(s)	439, 822, 876
BseRI	GAGGAG	8 cut(s)	668, 671, 674, 686, 689, 692, 704, 848
BseXI	GCAGC	3 cut(s)	269, 574, 923
BsgI	GTGCAG	2 cut(s)	656, 922
BshFI	GGCC	4 cut(s)	354, 890, 905, 950
BsiHKAI	GWGCWC	1 cut(s)	813
BsiHKCI	CYCGRG	1 cut(s)	845
BsiSI	CCGG	2 cut(s)	266, 955
BslFI	GGGAC	1 cut(s)	467
BslI	CCNNNNNNNGG	2 cut(s)	430, 451
BsmAI	GTCTC	2 cut(s)	366, 786
BsmBI	CGTCTC	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	467
BsnI	GGCC	4 cut(s)	354, 890, 905, 950
Bso31I	GGTCTC	1 cut(s)	786
BsoBI	CYCGRG	1 cut(s)	845
Bsp1286I	GDGCHC	1 cut(s)	813
Bsp143I	GATC	5 cut(s)	357, 745, 817, 841, 957
BspACI	CCGC	2 cut(s)	351, 716
BspANI	GGCC	4 cut(s)	354, 890, 905, 950
BspCNI	CTCAG	3 cut(s)	438, 823, 877
BspLI	GGNNCC	1 cut(s)	270
BspMI	ACCTGC	2 cut(s)	628, 813
BspPI	GGATC	2 cut(s)	849, 965
BspTI	CTTAAG	1 cut(s)	470
BspTNI	GGTCTC	1 cut(s)	786
BsrFI	RCCGGY	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	265
BssECI	CCNNGG	2 cut(s)	81, 430
BssMI	GATC	5 cut(s)	357, 745, 817, 841, 957
BssT1I	CCWWGG	1 cut(s)	81
Bst2UI	CCWGG	1 cut(s)	431
Bst6I	CTCTTC	2 cut(s)	122, 270
BstAFI	CTTAAG	1 cut(s)	470
BstC8I	GCNNGC	2 cut(s)	159, 755
BstDEI	CTNAG	4 cut(s)	425, 508, 831, 885
BstENI	CCTNNNNNAGG	1 cut(s)	428
BstF5I	GGATG	1 cut(s)	495
BstH2I	RGCGCY	1 cut(s)	929
BstHHI	GCGC	1 cut(s)	928
BstKTI	GATC	5 cut(s)	360, 748, 820, 844, 960
BstMAI	GTCTC	2 cut(s)	366, 786
BstMBI	GATC	5 cut(s)	357, 745, 817, 841, 957
BstMWI	GCNNNNNNNGC	1 cut(s)	266
BstNI	CCWGG	1 cut(s)	431
BstSCI	CCNGG	1 cut(s)	429
BstV1I	GCAGC	3 cut(s)	269, 574, 923
BstV2I	GAAGAC	1 cut(s)	155
BstX2I	RGATCY	2 cut(s)	841, 957
BstYI	RGATCY	2 cut(s)	841, 957
BsuRI	GGCC	4 cut(s)	354, 890, 905, 950
BtsCI	GGATG	1 cut(s)	495
BveI	ACCTGC	2 cut(s)	628, 813
Cac8I	GCNNGC	2 cut(s)	159, 755
CfoI	GCGC	1 cut(s)	928
Cfr10I	RCCGGY	1 cut(s)	265
Cfr13I	GGNCC	1 cut(s)	191
Csp6I	GTAC	1 cut(s)	26
CviAII	CATG	2 cut(s)	94, 318
CviQI	GTAC	1 cut(s)	26
DdeI	CTNAG	4 cut(s)	425, 508, 831, 885
DpnI	GATC	5 cut(s)	359, 747, 819, 843, 959
DpnII	GATC	5 cut(s)	357, 745, 817, 841, 957
EaeI	YGGCCR	1 cut(s)	903
Eam1104I	CTCTTC	2 cut(s)	122, 270
EarI	CTCTTC	2 cut(s)	122, 270
EciI	GGCGGA	1 cut(s)	731
Eco130I	CCWWGG	1 cut(s)	81
Eco147I	AGGCCT	1 cut(s)	950
Eco31I	GGTCTC	1 cut(s)	786
Eco47I	GGWCC	1 cut(s)	191
Eco47III	AGCGCT	1 cut(s)	927
Eco88I	CYCGRG	1 cut(s)	845
EcoNI	CCTNNNNNAGG	1 cut(s)	428
EcoRII	CCWGG	1 cut(s)	429
EcoT14I	CCWWGG	1 cut(s)	81
ErhI	CCWWGG	1 cut(s)	81
Esp3I	CGTCTC	1 cut(s)	366
FaeI	CATG	2 cut(s)	97, 321
FaiI	YATR	8 cut(s)	95, 319, 387, 405, 413, 483, 485, 874
FaqI	GGGAC	1 cut(s)	467
FatI	CATG	2 cut(s)	93, 317
FbaI	TGATCA	1 cut(s)	745
FblI	GTMKAC	1 cut(s)	180
Fnu4HI	GCNGC	4 cut(s)	258, 352, 588, 937
FokI	GGATG	1 cut(s)	502
Fsp4HI	GCNGC	4 cut(s)	258, 352, 588, 937
FspBI	CTAG	2 cut(s)	632, 982
GlaI	GCGC	1 cut(s)	927
GluI	GCNGC	4 cut(s)	258, 352, 588, 937
GsuI	CTGGAG	1 cut(s)	255
HaeII	RGCGCY	1 cut(s)	929
HaeIII	GGCC	4 cut(s)	354, 890, 905, 950
HapII	CCGG	2 cut(s)	266, 955
HhaI	GCGC	1 cut(s)	928
Hin1II	CATG	2 cut(s)	97, 321
Hin6I	GCGC	1 cut(s)	926
HinP1I	GCGC	1 cut(s)	926
HincII	GTYRAC	1 cut(s)	181
HindII	GTYRAC	1 cut(s)	181
HinfI	GANTC	4 cut(s)	32, 418, 496, 893
HpaII	CCGG	2 cut(s)	266, 955
HphI	GGTGA	3 cut(s)	6, 255, 259
Hpy166II	GTNNAC	1 cut(s)	181
Hpy188I	TCNGA	4 cut(s)	214, 501, 750, 804
Hpy188III	TCNNGA	3 cut(s)	272, 520, 845
Hpy8I	GTNNAC	1 cut(s)	181
Hpy99I	CGWCG	1 cut(s)	783
HpyAV	CCTTC	5 cut(s)	517, 538, 610, 703, 862
HpyCH4IV	ACGT	2 cut(s)	87, 503
HpyCH4V	TGCA	4 cut(s)	161, 493, 637, 939
HpyF10VI	GCNNNNNNNGC	1 cut(s)	266
HpyF3I	CTNAG	4 cut(s)	425, 508, 831, 885
HpySE526I	ACGT	2 cut(s)	87, 503
Hsp92II	CATG	2 cut(s)	97, 321
HspAI	GCGC	1 cut(s)	926
Ksp22I	TGATCA	1 cut(s)	745
Kzo9I	GATC	5 cut(s)	357, 745, 817, 841, 957
LmnI	GCTCC	3 cut(s)	274, 321, 835
Lsp1109I	GCAGC	3 cut(s)	269, 574, 923
LweI	GCATC	3 cut(s)	43, 480, 574
MaeI	CTAG	2 cut(s)	632, 982
MaeII	ACGT	2 cut(s)	87, 503
MaeIII	GTNAC	2 cut(s)	59, 530
MalI	GATC	5 cut(s)	359, 747, 819, 843, 959
MboI	GATC	5 cut(s)	357, 745, 817, 841, 957
MflI	RGATCY	2 cut(s)	841, 957
MhlI	GDGCHC	1 cut(s)	813
MluCI	AATT	7 cut(s)	76, 398, 564, 602, 879, 898, 976
MlyI	GAGTC	1 cut(s)	427
MmeI	TCCRAC	2 cut(s)	123, 312
MroXI	GAANNNNTTC	1 cut(s)	548
MseI	TTAA	2 cut(s)	471, 605
MspCI	CTTAAG	1 cut(s)	470
MspI	CCGG	2 cut(s)	266, 955
MspR9I	CCNGG	1 cut(s)	431
MvaI	CCWGG	1 cut(s)	431
MwoI	GCNNNNNNNGC	1 cut(s)	266
NdeII	GATC	5 cut(s)	357, 745, 817, 841, 957
NlaIII	CATG	2 cut(s)	97, 321
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	59
PaeR7I	CTCGAG	1 cut(s)	845
PaqCI	CACCTGC	2 cut(s)	628, 813
PceI	AGGCCT	1 cut(s)	950
PdmI	GAANNNNTTC	1 cut(s)	548
PfeI	GAWTC	3 cut(s)	32, 496, 893
PflFI	GACNNNGTC	1 cut(s)	44
PkrI	GCNGC	4 cut(s)	259, 353, 589, 938
PleI	GAGTC	1 cut(s)	426
PpsI	GAGTC	1 cut(s)	426
Psp6I	CCWGG	1 cut(s)	429
PspGI	CCWGG	1 cut(s)	429
PspN4I	GGNNCC	1 cut(s)	270
PspPI	GGNCC	1 cut(s)	191
PsuI	RGATCY	2 cut(s)	841, 957
PsyI	GACNNNGTC	1 cut(s)	44
RsaI	GTAC	1 cut(s)	27
RsaNI	GTAC	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	179
SaqAI	TTAA	2 cut(s)	471, 605
SatI	GCNGC	4 cut(s)	258, 352, 588, 937
Sau3AI	GATC	5 cut(s)	357, 745, 817, 841, 957
Sau96I	GGNCC	1 cut(s)	191
SchI	GAGTC	1 cut(s)	427
ScrFI	CCNGG	1 cut(s)	431
SduI	GDGCHC	1 cut(s)	813
SetI	ASST	9 cut(s)	76, 90, 196, 262, 506, 549, 642, 714, 827
SfaNI	GCATC	3 cut(s)	43, 480, 574
Sfr274I	CTCGAG	1 cut(s)	845
SinI	GGWCC	1 cut(s)	191
SlaI	CTCGAG	1 cut(s)	845
SmlI	CTYRAG	3 cut(s)	470, 845, 944
SmoI	CTYRAG	3 cut(s)	470, 845, 944
SpeI	ACTAGT	1 cut(s)	631
Sse9I	AATT	7 cut(s)	76, 398, 564, 602, 879, 898, 976
SseBI	AGGCCT	1 cut(s)	950
SsiI	CCGC	2 cut(s)	351, 716
SspMI	CTAG	2 cut(s)	632, 982
StuI	AGGCCT	1 cut(s)	950
StyD4I	CCNGG	1 cut(s)	429
StyI	CCWWGG	1 cut(s)	81
TaiI	ACGT	2 cut(s)	90, 506
TaqI	TCGA	3 cut(s)	180, 846, 896
TasI	AATT	7 cut(s)	76, 398, 564, 602, 879, 898, 976
TauI	GCSGC	1 cut(s)	354
TfiI	GAWTC	3 cut(s)	32, 496, 893
Tru1I	TTAA	2 cut(s)	471, 605
Tru9I	TTAA	2 cut(s)	471, 605
TseFI	GTSAC	1 cut(s)	59
TseI	GCWGC	3 cut(s)	257, 587, 936
Tsp45I	GTSAC	1 cut(s)	59
TspDTI	ATGAA	3 cut(s)	420, 557, 612
TspGWI	ACGGA	1 cut(s)	204
Tth111I	GACNNNGTC	1 cut(s)	44
Vha464I	CTTAAG	1 cut(s)	470
VpaK11BI	GGWCC	1 cut(s)	191
XagI	CCTNNNNNAGG	1 cut(s)	428
XapI	RAATTY	3 cut(s)	398, 564, 898
XhoI	CTCGAG	1 cut(s)	845
XmiI	GTMKAC	1 cut(s)	180
XmnI	GAANNNNTTC	1 cut(s)	548
XspI	CTAG	2 cut(s)	632, 982

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.