Rmu_sc0004761.1_g000007

Telomerase activating protein Est1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004761.1
OG0002793
Physical Location & Seq
Forward (+)
36621 .. 37243
623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004761.1_g000007.1.cds

Sequence Viewer

Length: 522 bp
atggctaagccacagttcaaagatcagagagaaatacaaaaaatggaggttgcaagcaaagagaatcagctgtgggcactgatccatgccaaaggtcttttgcactctgatgttcaggatttgtaccagaaagtgaggtcttgttatgagaatatcatcctgaatgataatgcacagctggaacttcaagacattgagtattctttgtggaagctttactataagcttatagatgaatttcgtaaaaggataaagaaaagttcagcagcgcctcaagatgatagtcatatagaaggattaaaactctttctatctgaaggaattcagttctaccaaaatttgattgtgaaaataagagaatgctatggcctcacagaagagtctgtgttctacagaaagggaggcaaaattacccttggtaattttgcctccctttctgtagaacacagactcttctgtgaggccatagcattctcttattttcacaatcaaattttggtagaactgaattccttcagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000723 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005697 GO:0005737 GO:0006139 GO:0006259 GO:0006278 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007004 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010833 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0031323 GO:0031329 GO:0031503 GO:0032200 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0042162 GO:0042592 GO:0042886 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
EST1 EST1_DNA_bind

Protein Analysis

173

Amino Acids

20.36

Weight (kDa)

6.96

Isoelectric Point (pI)

46.76

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 5 cut(s) 236, 321, 337, 492, 508
AcuI CTGAAG 2 cut(s) 336, 499
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 2 cut(s) 19, 188
AluBI AGCT 4 cut(s) 70, 178, 214, 226
AluI AGCT 4 cut(s) 70, 178, 214, 226
AlwI GGATC 1 cut(s) 76
AoxI GGCC 2 cut(s) 367, 462
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 5 cut(s) 236, 321, 337, 492, 508
Asp700I GAANNNNTTC 2 cut(s) 321, 512
AspLEI GCGC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 278
BfmI CTRYAG 2 cut(s) 391, 438
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 1 cut(s) 267
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 268
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 415
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 278
BshFI GGCC 2 cut(s) 369, 464
BsmI GAATGC 2 cut(s) 365, 470
BsnI GGCC 2 cut(s) 369, 464
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 22, 81
Bsp1720I GCTNAGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 369, 464
BspPI GGATC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 2 cut(s) 22, 81
BssT1I CCWWGG 1 cut(s) 415
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 2 cut(s) 372, 458
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 2 cut(s) 25, 84
BstMBI GATC 2 cut(s) 22, 81
BstSFI CTRYAG 2 cut(s) 391, 438
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 278
BsuRI GGCC 2 cut(s) 369, 464
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 86
CviJI RGCY 8 cut(s) 5, 10, 70, 178, 214, 226, 369, 464
CviKI_1 RGCY 8 cut(s) 5, 10, 70, 178, 214, 226, 369, 464
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 24, 83
DpnII GATC 2 cut(s) 22, 81
Eam1104I CTCTTC 2 cut(s) 372, 458
EarI CTCTTC 2 cut(s) 372, 458
Eco130I CCWWGG 1 cut(s) 415
Eco57I CTGAAG 2 cut(s) 336, 499
EcoRI GAATTC 2 cut(s) 321, 508
EcoT14I CCWWGG 1 cut(s) 415
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 1 cut(s) 89
FaiI YATR 8 cut(s) 87, 147, 222, 230, 288, 290, 366, 467
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 267
GlaI GCGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 2 cut(s) 369, 464
HhaI GCGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 2 cut(s) 212, 224
HinfI GANTC 3 cut(s) 64, 380, 450
Hpy188I TCNGA 4 cut(s) 27, 109, 316, 518
Hpy188III TCNNGA 4 cut(s) 116, 160, 188, 275
HpyAV CCTTC 2 cut(s) 287, 311
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 53, 103, 173
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 2 cut(s) 22, 81
LpnPI CCDG 4 cut(s) 101, 140, 164, 173
Lsp1109I GCAGC 1 cut(s) 278
MalI GATC 2 cut(s) 24, 83
MboI GATC 2 cut(s) 22, 81
MboII GAAGA 2 cut(s) 389, 445
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 7 cut(s) 236, 321, 337, 408, 421, 492, 508
MlyI GAGTC 2 cut(s) 389, 444
MnlI CCTC 7 cut(s) 40, 129, 282, 380, 395, 439, 454
MroXI GAANNNNTTC 2 cut(s) 321, 512
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 70, 178
Mva1269I GAATGC 2 cut(s) 365, 470
NdeII GATC 2 cut(s) 22, 81
NlaIII CATG 1 cut(s) 89
PctI GAATGC 2 cut(s) 365, 470
PdmI GAANNNNTTC 2 cut(s) 321, 512
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 2 cut(s) 388, 444
PpsI GAGTC 2 cut(s) 388, 444
PvuII CAGCTG 2 cut(s) 70, 178
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 22, 81
SchI GAGTC 2 cut(s) 389, 444
SduI GDGCHC 1 cut(s) 79
SetI ASST 7 cut(s) 51, 72, 97, 140, 180, 216, 228
SfcI CTRYAG 2 cut(s) 391, 438
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 7 cut(s) 236, 321, 337, 408, 421, 492, 508
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 15
TasI AATT 7 cut(s) 236, 321, 337, 408, 421, 492, 508
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 1 cut(s) 84
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 1 cut(s) 84
XapI RAATTY 5 cut(s) 236, 321, 337, 492, 508
XmnI GAANNNNTTC 2 cut(s) 321, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.