Rorug04G0437900

Telomerase activating protein Est1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000004
OG0002793
Physical Location & Seq
Reverse (-)
59526552 .. 59527748
1197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug04G0437900.1

Sequence Viewer

Length: 768 bp
ATGGAAAATACCTGGGAATCTGAAGATCAACACGGCTACTCTGCCGGGTCTTCAGTCGATCATGACCACAAGAAGCTCAGGCTATTCGGGTTTGAGCTCAATCCGTACAAGAACGTCGACGAAAATATCAAAGCCTGTGCTGAAGGAGATGAGAGCGTAAATTCGTCGAACACATGGAAAGCATCAACCAGCAGCGAAGCCGAGCAACTCGACAACAAGAAGTTCGAGTGTCAATACTGTTTCAAGGAGTTTGCAAATTCACAAGCGCTTGGTGGACATCAAAATGCGCACAAGAAGGAGAGGATGAAGAAGAAGAGGCTTCAGCTCCAAGCAAGAAAGGCCAGCATCAACTATTACCTCCAACCTTTCCAGAATTTCAATCATCCTCATGGTTCTGCTGCATCAGCTTCATGGTTTTACGATCCCTCCTCGTATGTTAACAATACCGAACAGTTTACGCTCCATGAAGAATCCCAAATCAGCTTCAACCCGTATGATCAAAATGGATCGAACGGGTCGGCCCAGGTTTCTAATTGGTATGCTTTACCTGGAGGAGCTCAGTTTCCTTACCAGCAAGAACAAGATGATCATTCATCTAAGTTCACTTTGACACAAACAGATAGATCAGGAGAAAGCAGACCAGTGATCTTCAATAAGCCTTCGTCTTTACCTGCTTCGACTACTCAAAGTTCATGTAAACCTTTGGATCTTCAGTTAGGGATTGGCTTGCCATCGAAGATACAAAGATCATCTAGAAGTGAAGTTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000723 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005697 GO:0005737 GO:0006139 GO:0006259 GO:0006278 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007004 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010833 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0031323 GO:0031329 GO:0031503 GO:0032200 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0042162 GO:0042592 GO:0042886 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
EST1 EST1_DNA_bind

Protein Analysis

255

Amino Acids

28.75

Weight (kDa)

6.14

Isoelectric Point (pI)

57.56

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 288
Acc36I ACCTGC 1 cut(s) 679
AccI GTMKAC 1 cut(s) 117
AclWI GGATC 3 cut(s) 416, 514, 714
AcsI RAATTY 3 cut(s) 160, 256, 373
AcuI CTGAAG 5 cut(s) 36, 42, 162, 305, 695
AfaI GTAC 1 cut(s) 107
AfeI AGCGCT 1 cut(s) 267
AgsI TTSAA 4 cut(s) 244, 379, 487, 652
AjnI CCWGG 3 cut(s) 11, 522, 547
AluBI AGCT 6 cut(s) 76, 97, 325, 407, 483, 557
AluI AGCT 6 cut(s) 76, 97, 325, 407, 483, 557
Alw21I GWGCWC 2 cut(s) 99, 559
AlwI GGATC 3 cut(s) 416, 514, 714
Aor51HI AGCGCT 1 cut(s) 267
AoxI GGCC 2 cut(s) 339, 519
ApeKI GCWGC 2 cut(s) 192, 398
ApoI RAATTY 3 cut(s) 160, 256, 373
AspLEI GCGC 2 cut(s) 268, 289
AspS9I GGNCC 1 cut(s) 520
AsuC2I CCSGG 1 cut(s) 46
BanII GRGCYC 2 cut(s) 99, 559
BbsI GAAGAC 1 cut(s) 42
Bbv12I GWGCWC 2 cut(s) 99, 559
BbvI GCAGC 2 cut(s) 204, 385
BccI CCATC 1 cut(s) 739
BceAI ACGGC 1 cut(s) 49
BciT130I CCWGG 3 cut(s) 13, 524, 549
BclI TGATCA 2 cut(s) 496, 586
BcnI CCSGG 1 cut(s) 46
BfaI CTAG 1 cut(s) 753
BfoI RGCGCY 1 cut(s) 269
BfuAI ACCTGC 1 cut(s) 679
BisI GCNGC 2 cut(s) 193, 399
BlsI GCNGC 2 cut(s) 194, 400
Bme1390I CCNGG 4 cut(s) 13, 46, 524, 549
BmgT120I GGNCC 1 cut(s) 520
BmrFI CCNGG 4 cut(s) 13, 46, 524, 549
BmsI GCATC 3 cut(s) 191, 354, 410
BpiI GAAGAC 1 cut(s) 42
BpmI CTGGAG 1 cut(s) 570
Bpu10I CCTNAGC 1 cut(s) 77
BpuMI CCSGG 1 cut(s) 46
BsaJI CCNNGG 2 cut(s) 12, 522
BsaXI ACNNNNNCTCC 2 cut(s) 410, 440
Bse1I ACTGG 1 cut(s) 641
BseBI CCWGG 3 cut(s) 13, 524, 549
BseDI CCNNGG 2 cut(s) 12, 522
BseGI GGATG 2 cut(s) 309, 382
BseMII CTCAG 2 cut(s) 91, 572
BseNI ACTGG 1 cut(s) 641
BseRI GAGGAG 2 cut(s) 418, 567
BseXI GCAGC 2 cut(s) 204, 385
BshFI GGCC 2 cut(s) 341, 521
BsiHKAI GWGCWC 2 cut(s) 99, 559
BsiSI CCGG 1 cut(s) 45
BsnI GGCC 2 cut(s) 341, 521
Bsp1286I GDGCHC 2 cut(s) 99, 559
BspANI GGCC 2 cut(s) 341, 521
BspCNI CTCAG 2 cut(s) 90, 571
BspHI TCATGA 1 cut(s) 61
BspMI ACCTGC 1 cut(s) 679
BspPI GGATC 3 cut(s) 416, 514, 714
BsrI ACTGG 1 cut(s) 641
BssECI CCNNGG 2 cut(s) 12, 522
Bst2UI CCWGG 3 cut(s) 13, 524, 549
Bst4CI ACNGT 2 cut(s) 239, 453
Bst6I CTCTTC 1 cut(s) 308
BstC8I GCNNGC 2 cut(s) 343, 728
BstDEI CTNAG 3 cut(s) 77, 558, 597
BstF5I GGATG 2 cut(s) 309, 382
BstH2I RGCGCY 1 cut(s) 269
BstHHI GCGC 2 cut(s) 268, 289
BstMWI GCNNNNNNNGC 2 cut(s) 338, 404
BstNI CCWGG 3 cut(s) 13, 524, 549
BstSCI CCNGG 4 cut(s) 11, 44, 522, 547
BstV1I GCAGC 2 cut(s) 204, 385
BstV2I GAAGAC 1 cut(s) 42
BstX2I RGATCY 1 cut(s) 706
BstYI RGATCY 1 cut(s) 706
BsuRI GGCC 2 cut(s) 341, 521
BtsCI GGATG 2 cut(s) 309, 382
BtsIMutI CAGTG 1 cut(s) 648
BveI ACCTGC 1 cut(s) 679
Cac8I GCNNGC 2 cut(s) 343, 728
CciI TCATGA 1 cut(s) 61
CfoI GCGC 2 cut(s) 268, 289
Cfr13I GGNCC 1 cut(s) 520
Csp6I GTAC 1 cut(s) 106
CviAII CATG 6 cut(s) 62, 174, 389, 411, 464, 693
CviQI GTAC 1 cut(s) 106
DdeI CTNAG 3 cut(s) 77, 558, 597
Eam1104I CTCTTC 1 cut(s) 308
EarI CTCTTC 1 cut(s) 308
Ecl136II GAGCTC 2 cut(s) 97, 557
Eco24I GRGCYC 2 cut(s) 99, 559
Eco47III AGCGCT 1 cut(s) 267
Eco53kI GAGCTC 2 cut(s) 97, 557
Eco57I CTGAAG 5 cut(s) 36, 42, 162, 305, 695
EcoICRI GAGCTC 2 cut(s) 97, 557
EcoRII CCWGG 3 cut(s) 11, 522, 547
EcoT38I GRGCYC 2 cut(s) 99, 559
FaeI CATG 6 cut(s) 65, 177, 392, 414, 467, 696
FaiI YATR 9 cut(s) 63, 175, 390, 412, 435, 465, 495, 540, 694
FatI CATG 6 cut(s) 61, 173, 388, 410, 463, 692
FbaI TGATCA 2 cut(s) 496, 586
FblI GTMKAC 1 cut(s) 117
Fnu4HI GCNGC 2 cut(s) 193, 399
FokI GGATG 2 cut(s) 316, 369
FriOI GRGCYC 2 cut(s) 99, 559
Fsp4HI GCNGC 2 cut(s) 193, 399
FspAI RTGCGCAY 1 cut(s) 288
FspBI CTAG 1 cut(s) 753
FspI TGCGCA 1 cut(s) 288
GlaI GCGC 2 cut(s) 267, 288
GluI GCNGC 2 cut(s) 193, 399
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 269
HaeIII GGCC 2 cut(s) 341, 521
HapII CCGG 1 cut(s) 45
HhaI GCGC 2 cut(s) 268, 289
Hin1II CATG 6 cut(s) 65, 177, 392, 414, 467, 696
Hin6I GCGC 2 cut(s) 266, 287
HinP1I GCGC 2 cut(s) 266, 287
HincII GTYRAC 2 cut(s) 118, 439
HindII GTYRAC 2 cut(s) 118, 439
HinfI GANTC 2 cut(s) 17, 470
HpaI GTTAAC 1 cut(s) 439
HpaII CCGG 1 cut(s) 45
Hpy166II GTNNAC 6 cut(s) 118, 275, 439, 456, 603, 698
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 4 cut(s) 62, 370, 627, 753
Hpy8I GTNNAC 6 cut(s) 118, 275, 439, 456, 603, 698
Hpy99I CGWCG 3 cut(s) 119, 122, 169
HpyAV CCTTC 3 cut(s) 137, 289, 669
HpyCH4III ACNGT 2 cut(s) 239, 453
HpyCH4IV ACGT 1 cut(s) 114
HpyCH4V TGCA 2 cut(s) 254, 401
HpyF10VI GCNNNNNNNGC 2 cut(s) 338, 404
HpyF3I CTNAG 3 cut(s) 77, 558, 597
HpySE526I ACGT 1 cut(s) 114
Hsp92II CATG 6 cut(s) 65, 177, 392, 414, 467, 696
HspAI GCGC 2 cut(s) 266, 287
Ksp22I TGATCA 2 cut(s) 496, 586
KspAI GTTAAC 1 cut(s) 439
LmnI GCTCC 3 cut(s) 330, 465, 554
Lsp1109I GCAGC 2 cut(s) 204, 385
LweI GCATC 3 cut(s) 191, 354, 410
MaeI CTAG 1 cut(s) 753
MaeII ACGT 1 cut(s) 114
MboII GAAGA 9 cut(s) 35, 42, 319, 322, 325, 479, 640, 701, 748
MflI RGATCY 1 cut(s) 706
MhlI GDGCHC 2 cut(s) 99, 559
MluCI AATT 4 cut(s) 160, 256, 373, 532
MmeI TCCRAC 1 cut(s) 385
MnlI CCTC 7 cut(s) 294, 309, 368, 396, 436, 439, 545
MseI TTAA 1 cut(s) 438
MslI CAYNNNNRTG 2 cut(s) 282, 387
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 4 cut(s) 13, 46, 524, 549
MvaI CCWGG 3 cut(s) 13, 524, 549
MwoI GCNNNNNNNGC 2 cut(s) 338, 404
NciI CCSGG 1 cut(s) 46
NlaIII CATG 6 cut(s) 65, 177, 392, 414, 467, 696
NmeAIII GCCGAG 1 cut(s) 226
NsbI TGCGCA 1 cut(s) 288
PagI TCATGA 1 cut(s) 61
PfeI GAWTC 2 cut(s) 17, 470
PkrI GCNGC 2 cut(s) 194, 400
Psp124BI GAGCTC 2 cut(s) 99, 559
Psp6I CCWGG 3 cut(s) 11, 522, 547
PspGI CCWGG 3 cut(s) 11, 522, 547
PspPI GGNCC 1 cut(s) 520
PsuI RGATCY 1 cut(s) 706
RsaI GTAC 1 cut(s) 107
RsaNI GTAC 1 cut(s) 106
RseI CAYNNNNRTG 2 cut(s) 282, 387
SacI GAGCTC 2 cut(s) 99, 559
SalI GTCGAC 1 cut(s) 116
SaqAI TTAA 1 cut(s) 438
SatI GCNGC 2 cut(s) 193, 399
Sau96I GGNCC 1 cut(s) 520
ScrFI CCNGG 4 cut(s) 13, 46, 524, 549
SduI GDGCHC 2 cut(s) 99, 559
SfaNI GCATC 3 cut(s) 191, 354, 410
SgrDI CGTCGACG 1 cut(s) 116
SmiMI CAYNNNNRTG 2 cut(s) 282, 387
Sse9I AATT 4 cut(s) 160, 256, 373, 532
SspMI CTAG 1 cut(s) 753
SstI GAGCTC 2 cut(s) 99, 559
StyD4I CCNGG 4 cut(s) 11, 44, 522, 547
TaaI ACNGT 2 cut(s) 239, 453
TaiI ACGT 1 cut(s) 117
TaqI TCGA 8 cut(s) 57, 117, 167, 210, 225, 509, 677, 734
TasI AATT 4 cut(s) 160, 256, 373, 532
TfiI GAWTC 2 cut(s) 17, 470
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 648
TseI GCWGC 2 cut(s) 192, 398
TspDTI ATGAA 5 cut(s) 320, 399, 480, 582, 681
TspGWI ACGGA 1 cut(s) 93
TspRI CASTG 1 cut(s) 648
XapI RAATTY 3 cut(s) 160, 256, 373
XbaI TCTAGA 1 cut(s) 752
XmiI GTMKAC 1 cut(s) 117
XspI CTAG 1 cut(s) 753
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.