Rmu_sc0004761.1_g000008

Telomerase activating protein Est1

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004761.1
OG0002793
Physical Location & Seq
Reverse (-)
37031 .. 37653
623 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0004761.1_g000008.1.cds

Sequence Viewer

Length: 522 bp
atggctaagccacagttcaaagatcagagagaaatacaaaaaatggaggttgcaagcaaagagaatcagctgtgggcactgatccatgccaaaggtcttttgcactctgatgttcaggatttgtaccagaaagtgaggtcttgttatgagaatatcatcctgaatgataatgcacagctggaacttcaagacattgagtattctttgtggaagctttactataagcttatagatgaatttcgtaaaaggataaagaaaagttcagcagcgcctcaagatgatagtcatatagaaggattaaaactctttctatctgaaggaattcagttctaccaaaatttgattgtgaaaataagagaatgctatggcctcacagaagagtctgtgttctacagaaagggaggcaaaattaccaagggtaattttgcctccctttctgtagaacacagactcttctgtgaggccatagcattctcttattttcacaatcaaattttggtagaactgaattccttcagatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000184 GO:0000723 GO:0000956 GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003824 GO:0004518 GO:0004540 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005697 GO:0005737 GO:0006139 GO:0006259 GO:0006278 GO:0006401 GO:0006402 GO:0006403 GO:0006405 GO:0006406 GO:0006611 GO:0006725 GO:0006807 GO:0006810 GO:0006886 GO:0006913 GO:0006996 GO:0007004 GO:0008104 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009058 GO:0009059 GO:0009892 GO:0009894 GO:0009987 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0010833 GO:0015031 GO:0015833 GO:0015931 GO:0016043 GO:0016070 GO:0016071 GO:0016787 GO:0016788 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0019439 GO:0031323 GO:0031329 GO:0031503 GO:0032200 GO:0032991 GO:0033036 GO:0034613 GO:0034641 GO:0034645 GO:0034654 GO:0034655 GO:0042162 GO:0042592 GO:0042886 GO:0043021 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043565 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044260 GO:0044265 GO:0044270 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0044877 GO:0045184 GO:0046483 GO:0046700 GO:0046907 GO:0048519 GO:0050657 GO:0050658 GO:0050789 GO:0050794 GO:0051028 GO:0051168 GO:0051169 GO:0051171 GO:0051179 GO:0051234 GO:0051236 GO:0051252 GO:0051276 GO:0051641 GO:0051649 GO:0060249 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070727 GO:0071166 GO:0071426 GO:0071427 GO:0071702 GO:0071704 GO:0071705 GO:0071840 GO:0071897 GO:0080090 GO:0090304 GO:0090305 GO:0090501 GO:0097159 GO:0140098 GO:1901360 GO:1901361 GO:1901362 GO:1901363 GO:1901575 GO:1901576 GO:1990904
KEGG Pathways
Metabolic & Signaling
ko03015 map03015
Pfam Domains
Protein Families
EST1 EST1_DNA_bind

Protein Analysis

173

Amino Acids

20.38

Weight (kDa)

7.7

Isoelectric Point (pI)

46.26

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 76
AcsI RAATTY 5 cut(s) 236, 321, 337, 492, 508
AcuI CTGAAG 2 cut(s) 336, 499
AfaI GTAC 1 cut(s) 125
AgsI TTSAA 2 cut(s) 19, 188
AluBI AGCT 4 cut(s) 70, 178, 214, 226
AluI AGCT 4 cut(s) 70, 178, 214, 226
AlwI GGATC 1 cut(s) 76
AoxI GGCC 2 cut(s) 367, 462
ApeKI GCWGC 1 cut(s) 266
ApoI RAATTY 5 cut(s) 236, 321, 337, 492, 508
Asp700I GAANNNNTTC 2 cut(s) 321, 512
AspLEI GCGC 1 cut(s) 271
BaeGI GKGCMC 1 cut(s) 79
BbvI GCAGC 1 cut(s) 278
BfmI CTRYAG 2 cut(s) 391, 438
BfoI RGCGCY 1 cut(s) 272
BisI GCNGC 1 cut(s) 267
BlpI GCTNAGC 1 cut(s) 6
BlsI GCNGC 1 cut(s) 268
Bpu1102I GCTNAGC 1 cut(s) 6
BpuEI CTTGAG 1 cut(s) 258
BsaJI CCNNGG 1 cut(s) 414
BseDI CCNNGG 1 cut(s) 414
BseGI GGATG 1 cut(s) 156
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 1 cut(s) 278
BshFI GGCC 2 cut(s) 369, 464
BsmI GAATGC 2 cut(s) 365, 470
BsnI GGCC 2 cut(s) 369, 464
Bsp1286I GDGCHC 1 cut(s) 79
Bsp143I GATC 2 cut(s) 22, 81
Bsp1720I GCTNAGC 1 cut(s) 6
BspANI GGCC 2 cut(s) 369, 464
BspPI GGATC 1 cut(s) 76
BssECI CCNNGG 1 cut(s) 414
BssMI GATC 2 cut(s) 22, 81
BssT1I CCWWGG 1 cut(s) 414
Bst4CI ACNGT 1 cut(s) 15
Bst6I CTCTTC 2 cut(s) 372, 458
BstC8I GCNNGC 1 cut(s) 55
BstDEI CTNAG 1 cut(s) 6
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 272
BstHHI GCGC 1 cut(s) 271
BstKTI GATC 2 cut(s) 25, 84
BstMBI GATC 2 cut(s) 22, 81
BstSFI CTRYAG 2 cut(s) 391, 438
BstSLI GKGCMC 1 cut(s) 79
BstV1I GCAGC 1 cut(s) 278
BsuRI GGCC 2 cut(s) 369, 464
BtsCI GGATG 1 cut(s) 156
BtsIMutI CAGTG 1 cut(s) 77
Cac8I GCNNGC 1 cut(s) 55
CfoI GCGC 1 cut(s) 271
Csp6I GTAC 1 cut(s) 124
CviAII CATG 1 cut(s) 86
CviJI RGCY 8 cut(s) 5, 10, 70, 178, 214, 226, 369, 464
CviKI_1 RGCY 8 cut(s) 5, 10, 70, 178, 214, 226, 369, 464
CviQI GTAC 1 cut(s) 124
DdeI CTNAG 1 cut(s) 6
DpnI GATC 2 cut(s) 24, 83
DpnII GATC 2 cut(s) 22, 81
Eam1104I CTCTTC 2 cut(s) 372, 458
EarI CTCTTC 2 cut(s) 372, 458
Eco130I CCWWGG 1 cut(s) 414
Eco57I CTGAAG 2 cut(s) 336, 499
EcoRI GAATTC 2 cut(s) 321, 508
EcoT14I CCWWGG 1 cut(s) 414
ErhI CCWWGG 1 cut(s) 414
FaeI CATG 1 cut(s) 89
FaiI YATR 8 cut(s) 87, 147, 222, 230, 288, 290, 366, 467
FatI CATG 1 cut(s) 85
Fnu4HI GCNGC 1 cut(s) 267
FokI GGATG 1 cut(s) 143
Fsp4HI GCNGC 1 cut(s) 267
GlaI GCGC 1 cut(s) 270
GluI GCNGC 1 cut(s) 267
HaeII RGCGCY 1 cut(s) 272
HaeIII GGCC 2 cut(s) 369, 464
HhaI GCGC 1 cut(s) 271
Hin1II CATG 1 cut(s) 89
Hin6I GCGC 1 cut(s) 269
HinP1I GCGC 1 cut(s) 269
HindIII AAGCTT 2 cut(s) 212, 224
HinfI GANTC 3 cut(s) 64, 380, 450
Hpy188I TCNGA 4 cut(s) 27, 109, 316, 518
Hpy188III TCNNGA 4 cut(s) 116, 160, 188, 275
HpyAV CCTTC 2 cut(s) 287, 311
HpyCH4III ACNGT 1 cut(s) 15
HpyCH4V TGCA 3 cut(s) 53, 103, 173
HpyF3I CTNAG 1 cut(s) 6
Hsp92II CATG 1 cut(s) 89
HspAI GCGC 1 cut(s) 269
Kzo9I GATC 2 cut(s) 22, 81
LpnPI CCDG 4 cut(s) 101, 140, 164, 173
Lsp1109I GCAGC 1 cut(s) 278
MalI GATC 2 cut(s) 24, 83
MboI GATC 2 cut(s) 22, 81
MboII GAAGA 2 cut(s) 389, 445
MhlI GDGCHC 1 cut(s) 79
MluCI AATT 7 cut(s) 236, 321, 337, 408, 421, 492, 508
MlyI GAGTC 2 cut(s) 389, 444
MnlI CCTC 7 cut(s) 40, 129, 282, 380, 395, 439, 454
MroXI GAANNNNTTC 2 cut(s) 321, 512
MseI TTAA 1 cut(s) 299
MslI CAYNNNNRTG 1 cut(s) 108
MspA1I CMGCKG 2 cut(s) 70, 178
Mva1269I GAATGC 2 cut(s) 365, 470
NdeII GATC 2 cut(s) 22, 81
NlaIII CATG 1 cut(s) 89
PctI GAATGC 2 cut(s) 365, 470
PdmI GAANNNNTTC 2 cut(s) 321, 512
PfeI GAWTC 1 cut(s) 64
PkrI GCNGC 1 cut(s) 268
PleI GAGTC 2 cut(s) 388, 444
PpsI GAGTC 2 cut(s) 388, 444
PvuII CAGCTG 2 cut(s) 70, 178
RsaI GTAC 1 cut(s) 125
RsaNI GTAC 1 cut(s) 124
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 1 cut(s) 299
SatI GCNGC 1 cut(s) 267
Sau3AI GATC 2 cut(s) 22, 81
SchI GAGTC 2 cut(s) 389, 444
SduI GDGCHC 1 cut(s) 79
SetI ASST 7 cut(s) 51, 72, 97, 140, 180, 216, 228
SfcI CTRYAG 2 cut(s) 391, 438
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 273
SmoI CTYRAG 1 cut(s) 273
Sse9I AATT 7 cut(s) 236, 321, 337, 408, 421, 492, 508
StyI CCWWGG 1 cut(s) 414
TaaI ACNGT 1 cut(s) 15
TasI AATT 7 cut(s) 236, 321, 337, 408, 421, 492, 508
TfiI GAWTC 1 cut(s) 64
Tru1I TTAA 1 cut(s) 299
Tru9I TTAA 1 cut(s) 299
TscAI CASTG 1 cut(s) 84
TseI GCWGC 1 cut(s) 266
TspDTI ATGAA 1 cut(s) 249
TspRI CASTG 1 cut(s) 84
XapI RAATTY 5 cut(s) 236, 321, 337, 492, 508
XmnI GAANNNNTTC 2 cut(s) 321, 512
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.