Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004796.1

Orthogroup ID

OG0009676

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1314

Gene Structure 1314 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1264 bp

atgatgcggctggagacgcattgtcttccaatacatattgagtctgatgatggcggtgatgaggttgcaaataaaattgagatggcaaaaaggcgtaagataaagattgatcatgggcgaacaacaagcagcatagatcatcaggagatcaagcagggtgcttctgtttcttgtttgtgtgatgtttgtgccaactttgctgtgacattcagttttaccgatgatgaaattgaaggtttacggaaggtcaatactcatgaaatgctacatcacagaaaactccacctggtacttaatctagaacgcaccctgctggatcacgcgcaactcagtgatctgacccctgaagaagatgaatatgtaaagactttaacgatggatcatcctctgcctctgcaagatgttctcaaagtgcaacattgtccccaaatgaagcctataattgtcaagcttaggccctttgcgagagcctttctgaaggaagccagcgacatgtttgaaatttatgcatactcaagtgcttctcgatatcttgcgtggaaaatggttgagctactcgatcctacaaatgagtactttggtcgtagagtgatatcgcgtgaggatttcgttagcacctttgcaggaaagaagtgtcttgttcttgtgcttgcccaagagtctactgttctgatccttgatcataagcaagagacatggacggagcaaaatcaaaataatatagtactaacgcaaaagtatcagttctttaaaggaaggagtgaacagaacagtgagttcaagtcccattgtgagttgaaaactgatgagggggcgtatcttgcagtgatccttcaacatcttaagctaattcacagcagcttctttgatgatcaagtgatgtgtgacaaccttattgaaagagatgtgaggaaggtgttgaaaaatcttcggcaacagaagctggcagagcagttgggaactacttgtgatgaacaaatggatctatcgatcacacaggtggctggggctcacgttggactacctgctcgttcattgcaaatggattttcctgctcgctcacaggaggttgcaagtaattatgagatggcaaaaaagcgtaacttaacgattgatcatgggggaacaacaagcagcacagatcatgaggagatcggggttgtttctgcttcttctttgtgtgattcttgtgccaactttgctgacagatacggttttctacacgaggggctcttaaccaccctaagtgctgaacacatttacc

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000428 GO:0003674 GO:0003824 GO:0004721 GO:0004722 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0006355 GO:0006357 GO:0006464 GO:0006470 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0008022 GO:0008150 GO:0008152 GO:0008420 GO:0009628 GO:0009651 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016311 GO:0016591 GO:0016787 GO:0016788 GO:0016791 GO:0019219 GO:0019222 GO:0019538 GO:0030880 GO:0031323 GO:0031326 GO:0031974 GO:0031981 GO:0032991 GO:0036211 GO:0042578 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070940 GO:0071704 GO:0080090 GO:0140096 GO:1901564 GO:1902494 GO:1903506 GO:1990234 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

BRCT NIF PTCB-BRCT

Protein Analysis

421

Amino Acids

47.98

Weight (kDa)

5.73

Isoelectric Point (pI)

48.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NIF	PF03031	95 - 262	4.9e-18	NLI interacting factor-like phosphatase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009676)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_4g02680 FvH4_4g35032 FvH4_6g12031
rosa_chinensis	RchiOBHm_Chr3g0463881
rosa_laevigata	RLG00000024739 RLG00000024742 RLG00000024745 RLG00000024748
rosa_multiflora	Rmu_co8025626.1_g000001 Rmu_co8196170.1_g000001 Rmu_sc0000517.1_g000007 Rmu_sc0004796.1_g000001 Rmu_sc0042095.1_g000001
rosa_roxburghii	Rroxscaffold_6G00416210
rosa_rugosa	Rorug03G0068800 Rorug03G0068900
rosa_samantha	Rh3AG125800 Rh3BG129900 Rh3CG132400 Rh3DG131000 Rh3DG131100
rosa_wichuraiana	Rw3G010620

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1033
AccI	GTMKAC	1 cut(s)	662
AccII	CGCG	2 cut(s)	323, 598
AciI	CCGC	2 cut(s)	7, 54
AclWI	GGATC	6 cut(s)	324, 387, 554, 667, 823, 990
AcsI	RAATTY	1 cut(s)	501
AcuI	CTGAAG	2 cut(s)	366, 497
AfaI	GTAC	3 cut(s)	291, 575, 726
AflII	CTTAAG	1 cut(s)	842
AflIII	ACRYGT	1 cut(s)	492
AgsI	TTSAA	7 cut(s)	233, 500, 781, 799, 836, 899, 922
AhdI	GACNNNNNGTC	1 cut(s)	21
AjnI	CCWGG	1 cut(s)	285
AleI	CACNNNNGTG	1 cut(s)	998
AluBI	AGCT	5 cut(s)	451, 553, 847, 861, 943
AluI	AGCT	5 cut(s)	451, 553, 847, 861, 943
Alw26I	GTCTC	2 cut(s)	8, 686
AlwI	GGATC	6 cut(s)	324, 387, 554, 667, 823, 990
AlwNI	CAGNNNCTG	1 cut(s)	943
AoxI	GGCC	1 cut(s)	455
ApeKI	GCWGC	3 cut(s)	129, 858, 1134
ApoI	RAATTY	1 cut(s)	501
AspLEI	GCGC	1 cut(s)	325
AspS9I	GGNCC	1 cut(s)	456
AsuHPI	GGTGA	1 cut(s)	68
BanII	GRGCYC	2 cut(s)	1012, 1233
BauI	CACGAG	1 cut(s)	1223
BbsI	GAAGAC	1 cut(s)	17
BbvI	GCAGC	3 cut(s)	141, 870, 1146
BccI	CCATC	4 cut(s)	44, 76, 370, 1081
BciT130I	CCWGG	1 cut(s)	287
BclI	TGATCA	4 cut(s)	109, 679, 871, 1114
BcoDI	GTCTC	2 cut(s)	8, 686
BfaI	CTAG	1 cut(s)	299
BfrI	CTTAAG	1 cut(s)	842
BfuAI	ACCTGC	1 cut(s)	1033
BisI	GCNGC	4 cut(s)	8, 130, 859, 1135
BlsI	GCNGC	4 cut(s)	9, 131, 860, 1136
BmcAI	AGTACT	2 cut(s)	575, 726
Bme1390I	CCNGG	1 cut(s)	287
BmeRI	GACNNNNNGTC	1 cut(s)	21
BmgT120I	GGNCC	1 cut(s)	456
BmrFI	CCNGG	1 cut(s)	287
BpiI	GAAGAC	1 cut(s)	17
BpmI	CTGGAG	1 cut(s)	32
Bpu10I	CCTNAGC	1 cut(s)	452
BpuEI	CTTGAG	1 cut(s)	499
Bsa29I	ATCGAT	1 cut(s)	989
Bse3DI	GCAATG	1 cut(s)	1034
BseBI	CCWGG	1 cut(s)	287
BseCI	ATCGAT	1 cut(s)	989
BseGI	GGATG	1 cut(s)	382
BseMI	GCAATG	1 cut(s)	1034
BseMII	CTCAG	1 cut(s)	343
BseRI	GAGGAG	1 cut(s)	1163
BseXI	GCAGC	3 cut(s)	141, 870, 1146
BseYI	CCCAGC	1 cut(s)	1004
Bsh1236I	CGCG	2 cut(s)	323, 598
BshFI	GGCC	1 cut(s)	457
BshVI	ATCGAT	1 cut(s)	989
BslFI	GGGAC	2 cut(s)	408, 769
BsmAI	GTCTC	2 cut(s)	8, 686
BsmBI	CGTCTC	1 cut(s)	8
BsmFI	GGGAC	2 cut(s)	408, 769
BsnI	GGCC	1 cut(s)	457
Bsp1286I	GDGCHC	2 cut(s)	1012, 1233
BspACI	CCGC	2 cut(s)	7, 54
BspANI	GGCC	1 cut(s)	457
BspCNI	CTCAG	1 cut(s)	342
BspDI	ATCGAT	1 cut(s)	989
BspFNI	CGCG	2 cut(s)	323, 598
BspHI	TCATGA	2 cut(s)	256, 1144
BspMI	ACCTGC	1 cut(s)	1033
BspPI	GGATC	6 cut(s)	324, 387, 554, 667, 823, 990
BspTI	CTTAAG	1 cut(s)	842
BsrDI	GCAATG	1 cut(s)	1034
BssSI	CACGAG	1 cut(s)	1223
Bst2BI	CACGAG	1 cut(s)	1223
Bst2UI	CCWGG	1 cut(s)	287
Bst4CI	ACNGT	3 cut(s)	667, 773, 1214
BstAFI	CTTAAG	1 cut(s)	842
BstC8I	GCNNGC	4 cut(s)	487, 651, 945, 1057
BstDEI	CTNAG	3 cut(s)	329, 452, 1244
BstF5I	GGATG	1 cut(s)	382
BstFNI	CGCG	2 cut(s)	323, 598
BstHHI	GCGC	1 cut(s)	325
BstMAI	GTCTC	2 cut(s)	8, 686
BstMWI	GCNNNNNNNGC	6 cut(s)	16, 197, 821, 940, 949, 1199
BstNI	CCWGG	1 cut(s)	287
BstNSI	RCATGY	1 cut(s)	496
BstSCI	CCNGG	1 cut(s)	285
BstUI	CGCG	2 cut(s)	323, 598
BstV1I	GCAGC	3 cut(s)	141, 870, 1146
BstV2I	GAAGAC	1 cut(s)	17
BstX2I	RGATCY	1 cut(s)	982
BstYI	RGATCY	1 cut(s)	982
Bsu15I	ATCGAT	1 cut(s)	989
BsuRI	GGCC	1 cut(s)	457
BsuTUI	ATCGAT	1 cut(s)	989
BtsCI	GGATG	1 cut(s)	382
BtsI	GCAGTG	1 cut(s)	831
BtsIMutI	CAGTG	3 cut(s)	337, 778, 831
BveI	ACCTGC	1 cut(s)	1033
Cac8I	GCNNGC	4 cut(s)	487, 651, 945, 1057
CaiI	CAGNNNCTG	1 cut(s)	943
CciI	TCATGA	2 cut(s)	256, 1144
CfoI	GCGC	1 cut(s)	325
Cfr13I	GGNCC	1 cut(s)	456
ClaI	ATCGAT	1 cut(s)	989
CseI	GACGC	1 cut(s)	25
CsiI	ACCWGGT	1 cut(s)	285
Csp6I	GTAC	3 cut(s)	290, 574, 725
CviAII	CATG	6 cut(s)	113, 257, 493, 696, 1118, 1145
CviQI	GTAC	3 cut(s)	290, 574, 725
DdeI	CTNAG	3 cut(s)	329, 452, 1244
DraI	TTTAAA	1 cut(s)	751
DriI	GACNNNNNGTC	1 cut(s)	21
Eam1105I	GACNNNNNGTC	1 cut(s)	21
Eco24I	GRGCYC	2 cut(s)	1012, 1233
Eco32I	GATATC	2 cut(s)	530, 594
Eco57I	CTGAAG	2 cut(s)	366, 497
EcoO109I	RGGNCCY	1 cut(s)	456
EcoRII	CCWGG	1 cut(s)	285
EcoRV	GATATC	2 cut(s)	530, 594
EcoT22I	ATGCAT	1 cut(s)	511
EcoT38I	GRGCYC	2 cut(s)	1012, 1233
Esp3I	CGTCTC	1 cut(s)	8
FaeI	CATG	6 cut(s)	116, 260, 496, 699, 1121, 1148
FalI	AAGNNNNNCTT	2 cut(s)	1088, 1120
FaqI	GGGAC	2 cut(s)	408, 769
FatI	CATG	6 cut(s)	112, 256, 492, 695, 1117, 1144
FbaI	TGATCA	4 cut(s)	109, 679, 871, 1114
FblI	GTMKAC	1 cut(s)	662
Fnu4HI	GCNGC	4 cut(s)	8, 130, 859, 1135
FokI	GGATG	1 cut(s)	369
FriOI	GRGCYC	2 cut(s)	1012, 1233
Fsp4HI	GCNGC	4 cut(s)	8, 130, 859, 1135
FspBI	CTAG	1 cut(s)	299
GlaI	GCGC	1 cut(s)	324
GluI	GCNGC	4 cut(s)	8, 130, 859, 1135
GsaI	CCCAGC	1 cut(s)	1008
GsuI	CTGGAG	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	457
HgaI	GACGC	1 cut(s)	25
HhaI	GCGC	1 cut(s)	325
Hin1II	CATG	6 cut(s)	116, 260, 496, 699, 1121, 1148
Hin6I	GCGC	1 cut(s)	323
HinP1I	GCGC	1 cut(s)	323
HindIII	AAGCTT	1 cut(s)	449
HinfI	GANTC	3 cut(s)	41, 659, 1184
HphI	GGTGA	1 cut(s)	68
Hpy166II	GTNNAC	3 cut(s)	239, 663, 764
Hpy188I	TCNGA	4 cut(s)	46, 339, 477, 672
Hpy188III	TCNNGA	5 cut(s)	143, 257, 299, 525, 1145
Hpy8I	GTNNAC	3 cut(s)	239, 663, 764
HpyAV	CCTTC	6 cut(s)	227, 238, 472, 750, 842, 907
HpyCH4III	ACNGT	3 cut(s)	667, 773, 1214
HpyCH4IV	ACGT	1 cut(s)	1014
HpyCH4V	TGCA	8 cut(s)	68, 397, 415, 509, 623, 824, 1039, 1073
HpyF10VI	GCNNNNNNNGC	6 cut(s)	16, 197, 821, 940, 949, 1199
HpyF3I	CTNAG	3 cut(s)	329, 452, 1244
HpySE526I	ACGT	1 cut(s)	1014
Hsp92II	CATG	6 cut(s)	116, 260, 496, 699, 1121, 1148
HspAI	GCGC	1 cut(s)	323
Ksp22I	TGATCA	4 cut(s)	109, 679, 871, 1114
LmnI	GCTCC	1 cut(s)	703
Lsp1109I	GCAGC	3 cut(s)	141, 870, 1146
MabI	ACCWGGT	1 cut(s)	285
MaeI	CTAG	1 cut(s)	299
MaeII	ACGT	1 cut(s)	1014
MaeIII	GTNAC	3 cut(s)	202, 884, 1100
MboII	GAAGA	5 cut(s)	17, 359, 362, 920, 1164
MflI	RGATCY	1 cut(s)	982
MhlI	GDGCHC	2 cut(s)	1012, 1233
MluCI	AATT	6 cut(s)	75, 228, 441, 501, 849, 1078
MlyI	GAGTC	2 cut(s)	50, 668
MmeI	TCCRAC	1 cut(s)	997
MnlI	CCTC	9 cut(s)	55, 396, 402, 595, 802, 903, 1060, 1141, 1219
Mph1103I	ATGCAT	1 cut(s)	511
MseI	TTAA	6 cut(s)	294, 371, 750, 843, 1106, 1235
MslI	CAYNNNNRTG	1 cut(s)	998
MspCI	CTTAAG	1 cut(s)	842
MspR9I	CCNGG	1 cut(s)	287
MvaI	CCWGG	1 cut(s)	287
MvnI	CGCG	2 cut(s)	323, 598
MwoI	GCNNNNNNNGC	6 cut(s)	16, 197, 821, 940, 949, 1199
NlaIII	CATG	6 cut(s)	116, 260, 496, 699, 1121, 1148
NmuCI	GTSAC	2 cut(s)	202, 884
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	1 cut(s)	496
OliI	CACNNNNGTG	1 cut(s)	998
PagI	TCATGA	2 cut(s)	256, 1144
PciI	ACATGT	1 cut(s)	492
PfeI	GAWTC	1 cut(s)	1184
PkrI	GCNGC	4 cut(s)	9, 131, 860, 1136
PleI	GAGTC	2 cut(s)	49, 667
PpsI	GAGTC	2 cut(s)	49, 667
PscI	ACATGT	1 cut(s)	492
Psp6I	CCWGG	1 cut(s)	285
PspFI	CCCAGC	1 cut(s)	1004
PspGI	CCWGG	1 cut(s)	285
PspPI	GGNCC	1 cut(s)	456
PstNI	CAGNNNCTG	1 cut(s)	943
PsuI	RGATCY	1 cut(s)	982
RsaI	GTAC	3 cut(s)	291, 575, 726
RsaNI	GTAC	3 cut(s)	290, 574, 725
RseI	CAYNNNNRTG	1 cut(s)	998
SaqAI	TTAA	6 cut(s)	294, 371, 750, 843, 1106, 1235
SatI	GCNGC	4 cut(s)	8, 130, 859, 1135
Sau96I	GGNCC	1 cut(s)	456
ScaI	AGTACT	2 cut(s)	575, 726
SchI	GAGTC	2 cut(s)	50, 668
ScrFI	CCNGG	1 cut(s)	287
SduI	GDGCHC	2 cut(s)	1012, 1233
SexAI	ACCWGGT	1 cut(s)	285
SmiMI	CAYNNNNRTG	1 cut(s)	998
SmlI	CTYRAG	2 cut(s)	514, 842
SmoI	CTYRAG	2 cut(s)	514, 842
Sse9I	AATT	6 cut(s)	75, 228, 441, 501, 849, 1078
SsiI	CCGC	2 cut(s)	7, 54
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	285
TaaI	ACNGT	3 cut(s)	667, 773, 1214
TaiI	ACGT	1 cut(s)	1017
TaqI	TCGA	3 cut(s)	526, 558, 989
TasI	AATT	6 cut(s)	75, 228, 441, 501, 849, 1078
TatI	WGTACW	2 cut(s)	573, 724
TauI	GCSGC	1 cut(s)	10
TfiI	GAWTC	1 cut(s)	1184
Tru1I	TTAA	6 cut(s)	294, 371, 750, 843, 1106, 1235
Tru9I	TTAA	6 cut(s)	294, 371, 750, 843, 1106, 1235
TscAI	CASTG	3 cut(s)	337, 778, 831
TseFI	GTSAC	2 cut(s)	202, 884
TseI	GCWGC	3 cut(s)	129, 858, 1134
Tsp45I	GTSAC	2 cut(s)	202, 884
TspDTI	ATGAA	6 cut(s)	240, 273, 369, 446, 987, 1023
TspGWI	ACGGA	2 cut(s)	256, 716
TspRI	CASTG	3 cut(s)	337, 778, 831
Vha464I	CTTAAG	1 cut(s)	842
XapI	RAATTY	1 cut(s)	501
XbaI	TCTAGA	1 cut(s)	298
XceI	RCATGY	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	662
XspI	CTAG	1 cut(s)	299
ZrmI	AGTACT	2 cut(s)	575, 726
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.