Rmu_sc0004841.1_g000003

Vesicle transport protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004841.1
OG0004920
Physical Location & Seq
Forward (+)
5071 .. 9516
4446 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 699 bp
atggtctttaaagctctgcctctatggccaaactttgatcacgagatctgcaccagagtccgattctttgagaagcccaacaatgtcggtgaattggaggcccaggaactccggccagcgagtggtgtagaggtggcgcacttgctcgggaatgagagcccaaacatgaggcaaagactggtctgcttcgctcgctctctcaggtcctcgcaagatcctcatcatccaatcgagttttgtgttcttcagatttctctaagtgagtcgtcggcaacaatggtttccttcgagatgaatgatcggaaaaagatcggactgggattgacaggatttggcgtatttttctcattcctgggaatggtttttttctttgacaagggattacttgcaatgggaaatatcctcttcttctcaggggtgactttaacaattggatttaagtccacgctgcaattcttcatgaaacgtcaaaattttaaggggtcaatttcttttggtgttgggttcttctttgtgctcataggatggccaattgtgggcatgattttggaggcatatggtttcgttgtactcttcagtggcttctggccaacattggcagtttttctgcagaagattccaattctgggatgggtggtccaacagccatatattagatcgttctttgatcgataccgtggtcgacgggtgcctgtgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Got1

Protein Analysis

232

Amino Acids

26.44

Weight (kDa)

9.62

Isoelectric Point (pI)

40.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Got1 PF04178 108 - 207 4.5e-13 Got1/Sft2-like family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 688
AccB7I CCANNNNNTGG 1 cut(s) 122
AccI GTMKAC 1 cut(s) 682
AclWI GGATC 1 cut(s) 209
AcoI YGGCCR 4 cut(s) 26, 113, 527, 587
AcsI RAATTY 1 cut(s) 472
AcuI CTGAAG 2 cut(s) 230, 559
AfaI GTAC 1 cut(s) 570
AfiI CCNNNNNNNGG 4 cut(s) 122, 358, 536, 626
AjnI CCWGG 2 cut(s) 102, 351
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw21I GWGCWC 1 cut(s) 519
AlwI GGATC 1 cut(s) 209
Ama87I CYCGRG 1 cut(s) 146
AoxI GGCC 5 cut(s) 26, 99, 113, 527, 587
ApeKI GCWGC 1 cut(s) 448
ApoI RAATTY 1 cut(s) 472
AspLEI GCGC 1 cut(s) 139
AspS9I GGNCC 3 cut(s) 100, 204, 637
AsuHPI GGTGA 2 cut(s) 101, 430
AvaI CYCGRG 1 cut(s) 146
AvaII GGWCC 2 cut(s) 204, 637
BaeI ACNNNNGTAYC 2 cut(s) 664, 697
BalI TGGCCA 3 cut(s) 28, 529, 589
BanI GGYRCC 1 cut(s) 688
BanII GRGCYC 1 cut(s) 161
BauI CACGAG 1 cut(s) 41
Bbv12I GWGCWC 1 cut(s) 519
BbvI GCAGC 1 cut(s) 435
BccI CCATC 2 cut(s) 519, 624
BciT130I CCWGG 2 cut(s) 104, 353
BclI TGATCA 1 cut(s) 37
BfmI CTRYAG 1 cut(s) 608
BglI GCCNNNNNGGC 1 cut(s) 25
BglII AGATCT 1 cut(s) 45
BisI GCNGC 1 cut(s) 449
BlsI GCNGC 1 cut(s) 450
Bme1390I CCNGG 2 cut(s) 104, 353
Bme18I GGWCC 2 cut(s) 204, 637
BmeT110I CYCGRG 1 cut(s) 146
BmgT120I GGNCC 3 cut(s) 100, 204, 637
BmiI GGNNCC 1 cut(s) 690
BmrFI CCNGG 2 cut(s) 104, 353
BmrI ACTGGG 1 cut(s) 326
BmuI ACTGGG 1 cut(s) 326
Bsa29I ATCGAT 1 cut(s) 670
BsaBI GATNNNNATC 1 cut(s) 219
BsaJI CCNNGG 3 cut(s) 102, 352, 676
Bsc4I CCNNNNNNNGG 4 cut(s) 122, 358, 536, 626
Bse1I ACTGG 2 cut(s) 183, 321
Bse3DI GCAATG 1 cut(s) 396
Bse8I GATNNNNATC 1 cut(s) 219
BseBI CCWGG 2 cut(s) 104, 353
BseCI ATCGAT 1 cut(s) 670
BseDI CCNNGG 3 cut(s) 102, 352, 676
BseGI GGATG 3 cut(s) 223, 530, 635
BseJI GATNNNNATC 1 cut(s) 219
BseLI CCNNNNNNNGG 4 cut(s) 122, 358, 536, 626
BseMI GCAATG 1 cut(s) 396
BseMII CTCAG 2 cut(s) 214, 426
BseNI ACTGG 2 cut(s) 183, 321
BseXI GCAGC 1 cut(s) 435
BsgI GTGCAG 1 cut(s) 34
BshFI GGCC 5 cut(s) 28, 101, 115, 529, 589
BshNI GGYRCC 1 cut(s) 688
BshVI ATCGAT 1 cut(s) 670
BsiHKAI GWGCWC 1 cut(s) 519
BsiHKCI CYCGRG 1 cut(s) 146
BsiSI CCGG 1 cut(s) 112
BslI CCNNNNNNNGG 4 cut(s) 122, 358, 536, 626
BsnI GGCC 5 cut(s) 28, 101, 115, 529, 589
BsoBI CYCGRG 1 cut(s) 146
Bsp1286I GDGCHC 2 cut(s) 161, 519
Bsp143I GATC 7 cut(s) 37, 45, 214, 298, 309, 656, 667
BspANI GGCC 5 cut(s) 28, 101, 115, 529, 589
BspCNI CTCAG 2 cut(s) 213, 425
BspDI ATCGAT 1 cut(s) 670
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 1 cut(s) 690
BspMAI CTGCAG 1 cut(s) 612
BspPI GGATC 1 cut(s) 209
BspT107I GGYRCC 1 cut(s) 688
BsrDI GCAATG 1 cut(s) 396
BsrI ACTGG 2 cut(s) 183, 321
BssECI CCNNGG 3 cut(s) 102, 352, 676
BssMI GATC 7 cut(s) 37, 45, 214, 298, 309, 656, 667
BssSI CACGAG 1 cut(s) 41
Bst2BI CACGAG 1 cut(s) 41
Bst2UI CCWGG 2 cut(s) 104, 353
Bst4CI ACNGT 1 cut(s) 677
Bst6I CTCTTC 2 cut(s) 410, 578
BstC8I GCNNGC 2 cut(s) 117, 193
BstDEI CTNAG 3 cut(s) 200, 257, 412
BstDSI CCRYGG 1 cut(s) 676
BstF5I GGATG 3 cut(s) 223, 530, 635
BstHHI GCGC 1 cut(s) 139
BstKTI GATC 7 cut(s) 40, 48, 217, 301, 312, 659, 670
BstMBI GATC 7 cut(s) 37, 45, 214, 298, 309, 656, 667
BstMWI GCNNNNNNNGC 2 cut(s) 25, 192
BstNI CCWGG 2 cut(s) 104, 353
BstSCI CCNGG 2 cut(s) 102, 351
BstSFI CTRYAG 1 cut(s) 608
BstV1I GCAGC 1 cut(s) 435
BstX2I RGATCY 2 cut(s) 45, 214
BstYI RGATCY 2 cut(s) 45, 214
Bsu15I ATCGAT 1 cut(s) 670
BsuRI GGCC 5 cut(s) 28, 101, 115, 529, 589
BsuTUI ATCGAT 1 cut(s) 670
BtgI CCRYGG 1 cut(s) 676
BtsCI GGATG 3 cut(s) 223, 530, 635
BtsIMutI CAGTG 1 cut(s) 583
Cac8I GCNNGC 2 cut(s) 117, 193
CciI TCATGA 1 cut(s) 459
CfoI GCGC 1 cut(s) 139
Cfr13I GGNCC 3 cut(s) 100, 204, 637
ClaI ATCGAT 1 cut(s) 670
Csp6I GTAC 1 cut(s) 569
CviAII CATG 3 cut(s) 166, 460, 541
CviQI GTAC 1 cut(s) 569
DdeI CTNAG 3 cut(s) 200, 257, 412
DpnI GATC 7 cut(s) 39, 47, 216, 300, 311, 658, 669
DpnII GATC 7 cut(s) 37, 45, 214, 298, 309, 656, 667
DraI TTTAAA 1 cut(s) 10
EaeI YGGCCR 4 cut(s) 26, 113, 527, 587
Eam1104I CTCTTC 2 cut(s) 410, 578
EarI CTCTTC 2 cut(s) 410, 578
Eco24I GRGCYC 1 cut(s) 161
Eco47I GGWCC 2 cut(s) 204, 637
Eco57I CTGAAG 2 cut(s) 230, 559
Eco88I CYCGRG 1 cut(s) 146
EcoO109I RGGNCCY 1 cut(s) 204
EcoRII CCWGG 2 cut(s) 102, 351
EcoT38I GRGCYC 1 cut(s) 161
FaeI CATG 3 cut(s) 169, 463, 544
FaiI YATR 9 cut(s) 25, 167, 461, 521, 542, 556, 558, 649, 651
FatI CATG 3 cut(s) 165, 459, 540
FauNDI CATATG 1 cut(s) 556
FbaI TGATCA 1 cut(s) 37
FblI GTMKAC 1 cut(s) 682
Fnu4HI GCNGC 1 cut(s) 449
FokI GGATG 3 cut(s) 210, 537, 642
FriOI GRGCYC 1 cut(s) 161
Fsp4HI GCNGC 1 cut(s) 449
GlaI GCGC 1 cut(s) 138
GluI GCNGC 1 cut(s) 449
HaeIII GGCC 5 cut(s) 28, 101, 115, 529, 589
HapII CCGG 1 cut(s) 112
HhaI GCGC 1 cut(s) 139
Hin1II CATG 3 cut(s) 169, 463, 544
Hin6I GCGC 1 cut(s) 137
HinP1I GCGC 1 cut(s) 137
HincII GTYRAC 1 cut(s) 683
HindII GTYRAC 1 cut(s) 683
HinfI GANTC 4 cut(s) 57, 63, 263, 616
HpaII CCGG 1 cut(s) 112
HphI GGTGA 2 cut(s) 101, 430
Hpy166II GTNNAC 2 cut(s) 444, 683
Hpy188I TCNGA 4 cut(s) 62, 249, 303, 314
Hpy188III TCNNGA 4 cut(s) 41, 148, 289, 460
Hpy8I GTNNAC 2 cut(s) 444, 683
Hpy99I CGWCG 2 cut(s) 271, 687
HpyAV CCTTC 1 cut(s) 295
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4IV ACGT 1 cut(s) 466
HpyCH4V TGCA 4 cut(s) 51, 389, 451, 610
HpyF10VI GCNNNNNNNGC 2 cut(s) 25, 192
HpyF3I CTNAG 3 cut(s) 200, 257, 412
HpySE526I ACGT 1 cut(s) 466
Hsp92II CATG 3 cut(s) 169, 463, 544
HspAI GCGC 1 cut(s) 137
Ksp22I TGATCA 1 cut(s) 37
Kzo9I GATC 7 cut(s) 37, 45, 214, 298, 309, 656, 667
Lsp1109I GCAGC 1 cut(s) 435
MaeII ACGT 1 cut(s) 466
MaeIII GTNAC 1 cut(s) 418
MalI GATC 7 cut(s) 39, 47, 216, 300, 311, 658, 669
MboI GATC 7 cut(s) 37, 45, 214, 298, 309, 656, 667
MboII GAAGA 7 cut(s) 236, 397, 400, 448, 499, 565, 625
MfeI CAATTG 2 cut(s) 429, 531
MflI RGATCY 2 cut(s) 45, 214
MhlI GDGCHC 2 cut(s) 161, 519
MlsI TGGCCA 3 cut(s) 28, 529, 589
MluCI AATT 7 cut(s) 92, 429, 452, 472, 486, 531, 621
MluNI TGGCCA 3 cut(s) 28, 529, 589
MlyI GAGTC 2 cut(s) 66, 272
MmeI TCCRAC 1 cut(s) 664
MnlI CCTC 8 cut(s) 30, 91, 124, 162, 217, 228, 413, 544
Mox20I TGGCCA 3 cut(s) 28, 529, 589
MscI TGGCCA 3 cut(s) 28, 529, 589
MseI TTAA 4 cut(s) 9, 425, 438, 477
Msp20I TGGCCA 3 cut(s) 28, 529, 589
MspI CCGG 1 cut(s) 112
MspR9I CCNGG 2 cut(s) 104, 353
MunI CAATTG 2 cut(s) 429, 531
MvaI CCWGG 2 cut(s) 104, 353
MwoI GCNNNNNNNGC 2 cut(s) 25, 192
NdeI CATATG 1 cut(s) 556
NdeII GATC 7 cut(s) 37, 45, 214, 298, 309, 656, 667
NlaIII CATG 3 cut(s) 169, 463, 544
NlaIV GGNNCC 1 cut(s) 690
NmuCI GTSAC 1 cut(s) 418
PagI TCATGA 1 cut(s) 459
PfeI GAWTC 2 cut(s) 63, 616
PflMI CCANNNNNTGG 1 cut(s) 122
PkrI GCNGC 1 cut(s) 450
PleI GAGTC 2 cut(s) 65, 271
PpsI GAGTC 2 cut(s) 65, 271
PpuMI RGGWCCY 1 cut(s) 204
Psp5II RGGWCCY 1 cut(s) 204
Psp6I CCWGG 2 cut(s) 102, 351
PspGI CCWGG 2 cut(s) 102, 351
PspN4I GGNNCC 1 cut(s) 690
PspPI GGNCC 3 cut(s) 100, 204, 637
PspPPI RGGWCCY 1 cut(s) 204
PstI CTGCAG 1 cut(s) 612
PsuI RGATCY 2 cut(s) 45, 214
RsaI GTAC 1 cut(s) 570
RsaNI GTAC 1 cut(s) 569
SalI GTCGAC 1 cut(s) 681
SaqAI TTAA 4 cut(s) 9, 425, 438, 477
SatI GCNGC 1 cut(s) 449
Sau3AI GATC 7 cut(s) 37, 45, 214, 298, 309, 656, 667
Sau96I GGNCC 3 cut(s) 100, 204, 637
SchI GAGTC 2 cut(s) 66, 272
ScrFI CCNGG 2 cut(s) 104, 353
SduI GDGCHC 2 cut(s) 161, 519
SetI ASST 4 cut(s) 16, 135, 206, 469
SfcI CTRYAG 1 cut(s) 608
SinI GGWCC 2 cut(s) 204, 637
Sse9I AATT 7 cut(s) 92, 429, 452, 472, 486, 531, 621
StyD4I CCNGG 2 cut(s) 102, 351
TaaI ACNGT 1 cut(s) 677
TaiI ACGT 1 cut(s) 469
TaqI TCGA 4 cut(s) 231, 288, 670, 682
TasI AATT 7 cut(s) 92, 429, 452, 472, 486, 531, 621
TatI WGTACW 1 cut(s) 568
TfiI GAWTC 2 cut(s) 63, 616
Tru1I TTAA 4 cut(s) 9, 425, 438, 477
Tru9I TTAA 4 cut(s) 9, 425, 438, 477
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 1 cut(s) 418
TseI GCWGC 1 cut(s) 448
Tsp45I GTSAC 1 cut(s) 418
TspDTI ATGAA 3 cut(s) 308, 448, 476
TspRI CASTG 1 cut(s) 583
Van91I CCANNNNNTGG 1 cut(s) 122
VpaK11BI GGWCC 2 cut(s) 204, 637
XapI RAATTY 1 cut(s) 472
XcmI CCANNNNNNNNNTGG 1 cut(s) 627
XmiI GTMKAC 1 cut(s) 682
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.