Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005006.1

Orthogroup ID

OG0006397

Physical Location & Seq

Genomic Coordinates Reverse (-)

17846 .. 20247

Gene Structure 2402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 963 bp

atgcttgaaacacagaaccggagcaatcccctaagtcggtccaagctaattggccgttgcatagtctcctgtatcttcgtctttctcactcacttggctctttctgtgatccctcgcttcttctccgctttctcctttctaacccaactcgctctctcggctctgctgcttctgctgctcgtgggttttggcggatggtgcagaagaacgcttcttagagcaaaagcttcggctccggctttggtcttcttcaatattctcttcatttgggggttttacttctctgttatccgaccagctgtgccgcaactaaacgatgccgttttcaactgtggagtcgtgttcctcgttattgatactgatagtaataatggtgttgtcaatggcagtatcataacaagtgaccctggcattgttacaaatgggtctgcctctccagaccagcctatggagagctcactttctcaagttgataaggagttggagcccttagcaagtggtttaggccatgagttgactcatgcatacataaagggtcttgaccatcattgtcctgcttttgggaattgtataggccaaaataatcatccccttttcttaattcttctgtttggatttatcggtactgaagcttcttatctagtgtgctcatcactctttgcggccaaatccaggatcttggatagaccctcggagcttactctttctgaaagtttagctgttagcacaattctgttcaccattctccaactgctatggcaggtggtctttttgatatggcacatatattgtttatgcgtgaacatcagaactgatgagtggataaaatggaagaagtatccagagttccaacttgttattccacctgaaccaggacaaagcttcagaaatattaggttctggaatccatatgacaaaggcattgtacagaatgtgaaggagtttctagccatccagcattaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006464 GO:0006497 GO:0006807 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0012505 GO:0016409 GO:0016740 GO:0016746 GO:0016747 GO:0018345 GO:0019538 GO:0034645 GO:0036211 GO:0042157 GO:0042158 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043543 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0071704 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DHHC

Protein Analysis

320

Amino Acids

35.8

Weight (kDa)

7.59

Isoelectric Point (pI)

39.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DHHC	PF01529	176 - 278	1.6e-15	DHHC palmitoyltransferase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006397)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g35813 FvH4_3g35813 FvH4_3g35813
malus_domestica	MD03G1096200.v1.1
prunus_persica	Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1 Prupe.6G079200_v2.0.a1
pyrus_communis	pycom03g07870
rosa_chinensis	RchiOBHm_Chr5g0064071
rosa_laevigata	RLG00000035699 RLG00000035701
rosa_multiflora	Rmu_sc0003547.1_g000007 Rmu_sc0005006.1_g000005
rosa_roxburghii	Rroxscaffold_1G00016800
rosa_rugosa	Rorug05G0362000 Rorug05G0362100
rosa_samantha	Rh5AG420600 Rh5BG436200 Rh5CG459000 Rh5DG449400 Rh5DG449600
rosa_wichuraiana	Rw5G039510

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	751
Acc36I	ACCTGC	1 cut(s)	751
AccB7I	CCANNNNNTGG	1 cut(s)	448
AciI	CCGC	4 cut(s)	126, 192, 305, 662
AclWI	GGATC	2 cut(s)	103, 683
AcoI	YGGCCR	2 cut(s)	52, 663
AcuI	CTGAAG	2 cut(s)	648, 868
AfaI	GTAC	2 cut(s)	625, 927
AfiI	CCNNNNNNNGG	5 cut(s)	36, 448, 560, 672, 872
AgsI	TTSAA	3 cut(s)	8, 253, 328
AjnI	CCWGG	3 cut(s)	406, 671, 871
AjuI	GAANNNNNNNTTGG	2 cut(s)	843, 875
AluBI	AGCT	8 cut(s)	46, 227, 299, 456, 632, 697, 719, 882
AluI	AGCT	8 cut(s)	46, 227, 299, 456, 632, 697, 719, 882
Alw21I	GWGCWC	2 cut(s)	458, 650
Alw26I	GTCTC	1 cut(s)	70
AlwI	GGATC	2 cut(s)	103, 683
AoxI	GGCC	4 cut(s)	52, 505, 574, 663
ApeKI	GCWGC	2 cut(s)	166, 175
AspS9I	GGNCC	1 cut(s)	39
AsuHPI	GGTGA	1 cut(s)	730
AvaII	GGWCC	1 cut(s)	39
BanII	GRGCYC	2 cut(s)	458, 489
BarI	GAAGNNNNNNTAC	2 cut(s)	616, 648
BauI	CACGAG	1 cut(s)	179
BbsI	GAAGAC	1 cut(s)	238
Bbv12I	GWGCWC	2 cut(s)	458, 650
BbvI	GCAGC	2 cut(s)	153, 162
BccI	CCATC	3 cut(s)	189, 552, 959
BceAI	ACGGC	2 cut(s)	39, 305
BcgI	CGANNNNNNTGC	2 cut(s)	210, 244
BciT130I	CCWGG	3 cut(s)	408, 673, 873
BciVI	GTATCC	1 cut(s)	849
BcoDI	GTCTC	1 cut(s)	70
BfaI	CTAG	2 cut(s)	641, 947
BfuAI	ACCTGC	1 cut(s)	751
BfuI	GTATCC	1 cut(s)	849
BisI	GCNGC	4 cut(s)	167, 176, 305, 663
BlsI	GCNGC	4 cut(s)	168, 177, 306, 664
Bme1390I	CCNGG	3 cut(s)	408, 673, 873
Bme18I	GGWCC	1 cut(s)	39
BmgT120I	GGNCC	1 cut(s)	39
BmiI	GGNNCC	2 cut(s)	234, 486
BmrFI	CCNGG	3 cut(s)	408, 673, 873
BmsI	GCATC	1 cut(s)	307
BpiI	GAAGAC	1 cut(s)	238
BpmI	CTGGAG	1 cut(s)	420
Bpu10I	CCTNAGC	1 cut(s)	490
BpuEI	CTTGAG	1 cut(s)	450
BsaJI	CCNNGG	2 cut(s)	406, 690
BsaWI	WCCGGW	1 cut(s)	18
Bsc4I	CCNNNNNNNGG	5 cut(s)	36, 448, 560, 672, 872
BseBI	CCWGG	3 cut(s)	408, 673, 873
BseDI	CCNNGG	2 cut(s)	406, 690
BseGI	GGATG	3 cut(s)	200, 586, 951
BseLI	CCNNNNNNNGG	5 cut(s)	36, 448, 560, 672, 872
BseXI	GCAGC	2 cut(s)	153, 162
BsgI	GTGCAG	1 cut(s)	220
BshFI	GGCC	4 cut(s)	54, 507, 576, 665
BsiHKAI	GWGCWC	2 cut(s)	458, 650
BsiSI	CCGG	2 cut(s)	19, 236
BslI	CCNNNNNNNGG	5 cut(s)	36, 448, 560, 672, 872
BsmAI	GTCTC	1 cut(s)	70
BsnI	GGCC	4 cut(s)	54, 507, 576, 665
Bsp1286I	GDGCHC	3 cut(s)	458, 489, 650
Bsp1407I	TGTACA	1 cut(s)	925
Bsp143I	GATC	2 cut(s)	108, 675
BspACI	CCGC	4 cut(s)	126, 192, 305, 662
BspANI	GGCC	4 cut(s)	54, 507, 576, 665
BspLI	GGNNCC	2 cut(s)	234, 486
BspMI	ACCTGC	1 cut(s)	751
BspPI	GGATC	2 cut(s)	103, 683
BsrGI	TGTACA	1 cut(s)	925
BssECI	CCNNGG	2 cut(s)	406, 690
BssMI	GATC	2 cut(s)	108, 675
BssSI	CACGAG	1 cut(s)	179
Bst2BI	CACGAG	1 cut(s)	179
Bst2UI	CCWGG	3 cut(s)	408, 673, 873
Bst4CI	ACNGT	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	266
BstAUI	TGTACA	1 cut(s)	925
BstDEI	CTNAG	3 cut(s)	32, 215, 490
BstENI	CCTNNNNNAGG	1 cut(s)	870
BstF5I	GGATG	3 cut(s)	200, 586, 951
BstKTI	GATC	2 cut(s)	111, 678
BstMAI	GTCTC	1 cut(s)	70
BstMBI	GATC	2 cut(s)	108, 675
BstMWI	GCNNNNNNNGC	4 cut(s)	158, 172, 175, 198
BstNI	CCWGG	3 cut(s)	408, 673, 873
BstSCI	CCNGG	3 cut(s)	406, 671, 871
BstV1I	GCAGC	2 cut(s)	153, 162
BstV2I	GAAGAC	1 cut(s)	238
BstX2I	RGATCY	1 cut(s)	675
BstXI	CCANNNNNNTGG	1 cut(s)	679
BstYI	RGATCY	1 cut(s)	675
BsuI	GTATCC	1 cut(s)	849
BsuRI	GGCC	4 cut(s)	54, 507, 576, 665
BtsCI	GGATG	3 cut(s)	200, 586, 951
BveI	ACCTGC	1 cut(s)	751
Cfr13I	GGNCC	1 cut(s)	39
Csp6I	GTAC	2 cut(s)	624, 926
CviAII	CATG	2 cut(s)	509, 521
CviQI	GTAC	2 cut(s)	624, 926
DdeI	CTNAG	3 cut(s)	32, 215, 490
DpnI	GATC	2 cut(s)	110, 677
DpnII	GATC	2 cut(s)	108, 675
EaeI	YGGCCR	2 cut(s)	52, 663
Eam1104I	CTCTTC	1 cut(s)	266
EarI	CTCTTC	1 cut(s)	266
EciI	GGCGGA	1 cut(s)	207
Ecl136II	GAGCTC	1 cut(s)	456
Eco24I	GRGCYC	2 cut(s)	458, 489
Eco47I	GGWCC	1 cut(s)	39
Eco53kI	GAGCTC	1 cut(s)	456
Eco57I	CTGAAG	2 cut(s)	648, 868
EcoICRI	GAGCTC	1 cut(s)	456
EcoNI	CCTNNNNNAGG	1 cut(s)	870
EcoRII	CCWGG	3 cut(s)	406, 671, 871
EcoT22I	ATGCAT	1 cut(s)	526
EcoT38I	GRGCYC	2 cut(s)	458, 489
FaeI	CATG	2 cut(s)	512, 524
FatI	CATG	2 cut(s)	508, 520
FauNDI	CATATG	1 cut(s)	910
Fnu4HI	GCNGC	4 cut(s)	167, 176, 305, 663
FokI	GGATG	3 cut(s)	207, 573, 938
FriOI	GRGCYC	2 cut(s)	458, 489
Fsp4HI	GCNGC	4 cut(s)	167, 176, 305, 663
FspBI	CTAG	2 cut(s)	641, 947
GluI	GCNGC	4 cut(s)	167, 176, 305, 663
GsuI	CTGGAG	1 cut(s)	420
HaeIII	GGCC	4 cut(s)	54, 507, 576, 665
HapII	CCGG	2 cut(s)	19, 236
Hin1II	CATG	2 cut(s)	512, 524
HincII	GTYRAC	1 cut(s)	516
HindII	GTYRAC	1 cut(s)	516
HindIII	AAGCTT	3 cut(s)	225, 630, 880
HinfI	GANTC	3 cut(s)	336, 517, 904
HpaII	CCGG	2 cut(s)	19, 236
HphI	GGTGA	1 cut(s)	730
Hpy166II	GTNNAC	3 cut(s)	516, 738, 802
Hpy188I	TCNGA	5 cut(s)	293, 694, 709, 809, 887
Hpy188III	TCNNGA	4 cut(s)	437, 539, 842, 901
Hpy8I	GTNNAC	3 cut(s)	516, 738, 802
HpyAV	CCTTC	1 cut(s)	931
HpyCH4III	ACNGT	1 cut(s)	332
HpyCH4V	TGCA	3 cut(s)	60, 201, 524
HpyF10VI	GCNNNNNNNGC	4 cut(s)	158, 172, 175, 198
HpyF3I	CTNAG	3 cut(s)	32, 215, 490
Hsp92II	CATG	2 cut(s)	512, 524
Kzo9I	GATC	2 cut(s)	108, 675
LmnI	GCTCC	4 cut(s)	21, 238, 484, 694
Lsp1109I	GCAGC	2 cut(s)	153, 162
LweI	GCATC	1 cut(s)	307
MaeI	CTAG	2 cut(s)	641, 947
MaeIII	GTNAC	2 cut(s)	401, 415
MalI	GATC	2 cut(s)	110, 677
MboI	GATC	2 cut(s)	108, 675
MboII	GAAGA	8 cut(s)	67, 112, 216, 238, 241, 253, 596, 844
MflI	RGATCY	1 cut(s)	675
MhlI	GDGCHC	3 cut(s)	458, 489, 650
MluCI	AATT	4 cut(s)	48, 565, 600, 729
MlyI	GAGTC	2 cut(s)	345, 511
MmeI	TCCRAC	4 cut(s)	316, 462, 772, 874
MnlI	CCTC	4 cut(s)	123, 356, 442, 700
Mph1103I	ATGCAT	1 cut(s)	526
MseI	TTAA	2 cut(s)	599, 961
MspA1I	CMGCKG	1 cut(s)	299
MspI	CCGG	2 cut(s)	19, 236
MspR9I	CCNGG	3 cut(s)	408, 673, 873
MvaI	CCWGG	3 cut(s)	408, 673, 873
MwoI	GCNNNNNNNGC	4 cut(s)	158, 172, 175, 198
NdeI	CATATG	1 cut(s)	910
NdeII	GATC	2 cut(s)	108, 675
NlaIII	CATG	2 cut(s)	512, 524
NlaIV	GGNNCC	2 cut(s)	234, 486
NmeAIII	GCCGAG	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	401
NsiI	ATGCAT	1 cut(s)	526
PaqCI	CACCTGC	1 cut(s)	751
PcsI	WCGNNNNNNNCGW	1 cut(s)	345
PfeI	GAWTC	1 cut(s)	904
PflMI	CCANNNNNTGG	1 cut(s)	448
PfoI	TCCNGGA	1 cut(s)	671
PkrI	GCNGC	4 cut(s)	168, 177, 306, 664
PleI	GAGTC	2 cut(s)	344, 511
PpsI	GAGTC	2 cut(s)	344, 511
Psp124BI	GAGCTC	1 cut(s)	458
Psp6I	CCWGG	3 cut(s)	406, 671, 871
PspGI	CCWGG	3 cut(s)	406, 671, 871
PspN4I	GGNNCC	2 cut(s)	234, 486
PspPI	GGNCC	1 cut(s)	39
PsrI	GAACNNNNNNTAC	2 cut(s)	830, 862
PsuI	RGATCY	1 cut(s)	675
PvuII	CAGCTG	1 cut(s)	299
RsaI	GTAC	2 cut(s)	625, 927
RsaNI	GTAC	2 cut(s)	624, 926
SacI	GAGCTC	1 cut(s)	458
SaqAI	TTAA	2 cut(s)	599, 961
SatI	GCNGC	4 cut(s)	167, 176, 305, 663
Sau3AI	GATC	2 cut(s)	108, 675
Sau96I	GGNCC	1 cut(s)	39
SchI	GAGTC	2 cut(s)	345, 511
ScrFI	CCNGG	3 cut(s)	408, 673, 873
SduI	GDGCHC	3 cut(s)	458, 489, 650
SfaNI	GCATC	1 cut(s)	307
SinI	GGWCC	1 cut(s)	39
SmlI	CTYRAG	1 cut(s)	465
SmoI	CTYRAG	1 cut(s)	465
Sse9I	AATT	4 cut(s)	48, 565, 600, 729
SsiI	CCGC	4 cut(s)	126, 192, 305, 662
SspI	AATATT	2 cut(s)	256, 892
SspMI	CTAG	2 cut(s)	641, 947
SstI	GAGCTC	1 cut(s)	458
StyD4I	CCNGG	3 cut(s)	406, 671, 871
TaaI	ACNGT	1 cut(s)	332
TaqII	GACCGA	1 cut(s)	27
TasI	AATT	4 cut(s)	48, 565, 600, 729
TatI	WGTACW	1 cut(s)	925
TauI	GCSGC	2 cut(s)	307, 665
TfiI	GAWTC	1 cut(s)	904
Tru1I	TTAA	2 cut(s)	599, 961
Tru9I	TTAA	2 cut(s)	599, 961
TseFI	GTSAC	1 cut(s)	401
TseI	GCWGC	2 cut(s)	166, 175
Tsp45I	GTSAC	1 cut(s)	401
TspDTI	ATGAA	1 cut(s)	253
Van91I	CCANNNNNTGG	1 cut(s)	448
VpaK11BI	GGWCC	1 cut(s)	39
XagI	CCTNNNNNAGG	1 cut(s)	870
XspI	CTAG	2 cut(s)	641, 947
Zsp2I	ATGCAT	1 cut(s)	526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.