Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005160.1

Orthogroup ID

OG0006508

Physical Location & Seq

Genomic Coordinates Forward (+)

17153 .. 21414

Gene Structure 4262 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

atggtgagttatatttttcttcatcttaattctcgcacaggaagcaagcatgtcactatgcagttatccagaggattttctggcttgaccgacctcttgttcaatggaagaaatgcaggtgaagttctaaattccaagcggaaacgcttaaggcctggaaaagtttcacctcgtcgccctgttccagatcatataccaaggccaccttatgtaaaatctaaacaaccgcctggaattgcgagtggacctgaagtgcatgatcatgagggaatagaatgcatgagagcttctgggaggcttgcagcacaggttcttgaatatgctgggactttggtcaagccaggcataaagactgatgaaattgaccaagctgttcaccaaatgataattgataatggggcctacccttcaccacttggctatggtggatttccaaagagcgtctgcacatcagtgaatgaatgcatttgccatggaataccagattcccgagaactggaggatggtgacatagttaacattgatgtcacagtctatttgaatgggtaccatggcgatacatcaaaaactttcttttgtggagatgttgatgatgcaggcagaaacttagttcaggtaactaaggaatgccttgacaaagcaatatcaatttgtgcacctggcgtggagttcaagaaaattggcagaacaatccatggacgcatggtgttaaatcaaaccttcacaatagaaccgatgctaacgattggtagctataatcctgtaatgtgggacgatgattggacagttgttacagaagatggaagcttatcagcacagtttgaacatactatcttaataaccaaggatggggctgagatactaactcagtgttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009719 GO:0009725 GO:0009737 GO:0009987 GO:0010033 GO:0019538 GO:0031365 GO:0033993 GO:0036211 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0071704 GO:0097305 GO:1901564 GO:1901700

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

291

Amino Acids

31.93

Weight (kDa)

6.06

Isoelectric Point (pI)

37.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	92 - 232	5.2e-35	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006508)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G25740 AT3G25740 AT4G37040
fragaria_vesca	FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810 FvH4_1g15810
malus_domestica	MD00G1045000.v1.1 MD02G1169900.v1.1
prunus_persica	Prupe.7G135200_v2.0.a1 Prupe.7G135300_v2.0.a1
pyrus_communis	pycom02g13680
rosa_chinensis	RchiOBHm_Chr2g0105091 RchiOBHm_Chr5g0066781
rosa_laevigata	RLG00000017402
rosa_multiflora	Rmu_sc0005160.1_g000008
rosa_roxburghii	Rroxscaffold_2G00138430
rosa_rugosa	Rorug02G0126300
rosa_samantha	Rh2AG177000 Rh2AG177100 Rh2BG185100 Rh2CG181400 Rh2DG183200
rosa_wichuraiana	Rw2G013890

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	107
Acc36I	ACCTGC	1 cut(s)	107
Acc65I	GGTACC	1 cut(s)	546
AccB1I	GGYRCC	1 cut(s)	546
AciI	CCGC	2 cut(s)	139, 227
AcsI	RAATTY	1 cut(s)	130
AcuI	CTGAAG	1 cut(s)	270
AfaI	GTAC	1 cut(s)	548
AfiI	CCNNNNNNNGG	2 cut(s)	496, 849
AflII	CTTAAG	1 cut(s)	148
AgsI	TTSAA	5 cut(s)	103, 317, 541, 673, 824
AjnI	CCWGG	4 cut(s)	154, 229, 340, 658
AleI	CACNNNNGTG	1 cut(s)	452
AluBI	AGCT	4 cut(s)	287, 371, 753, 807
AluI	AGCT	4 cut(s)	287, 371, 753, 807
Alw21I	GWGCWC	1 cut(s)	658
Alw44I	GTGCAC	1 cut(s)	654
Ama87I	CYCGRG	1 cut(s)	489
AoxI	GGCC	3 cut(s)	152, 200, 399
ApaLI	GTGCAC	1 cut(s)	654
ApeKI	GCWGC	1 cut(s)	302
ApoI	RAATTY	1 cut(s)	130
Asp700I	GAANNNNTTC	1 cut(s)	163
Asp718I	GGTACC	1 cut(s)	546
AspS9I	GGNCC	2 cut(s)	245, 399
AsuHPI	GGTGA	6 cut(s)	16, 131, 159, 368, 402, 518
AvaI	CYCGRG	1 cut(s)	489
AvaII	GGWCC	1 cut(s)	245
BaeGI	GKGCMC	1 cut(s)	658
BanI	GGYRCC	1 cut(s)	546
Bbv12I	GWGCWC	1 cut(s)	658
BbvI	GCAGC	1 cut(s)	314
BccI	CCATC	3 cut(s)	497, 794, 842
BciT130I	CCWGG	4 cut(s)	156, 231, 342, 660
BclI	TGATCA	1 cut(s)	259
BfrI	CTTAAG	1 cut(s)	148
BfuAI	ACCTGC	1 cut(s)	107
BisI	GCNGC	1 cut(s)	303
BlsI	GCNGC	1 cut(s)	304
Bme1390I	CCNGG	4 cut(s)	156, 231, 342, 660
Bme18I	GGWCC	1 cut(s)	245
BmeT110I	CYCGRG	1 cut(s)	489
BmgT120I	GGNCC	2 cut(s)	245, 399
BmiI	GGNNCC	2 cut(s)	400, 548
BmrFI	CCNGG	4 cut(s)	156, 231, 342, 660
BmsI	GCATC	2 cut(s)	583, 726
BoxI	GACNNNNGTC	1 cut(s)	332
BpmI	CTGGAG	1 cut(s)	518
BsaJI	CCNNGG	5 cut(s)	197, 472, 550, 694, 843
Bsc4I	CCNNNNNNNGG	2 cut(s)	496, 849
Bse1I	ACTGG	1 cut(s)	501
BseBI	CCWGG	4 cut(s)	156, 231, 342, 660
BseDI	CCNNGG	5 cut(s)	197, 472, 550, 694, 843
BseGI	GGATG	2 cut(s)	508, 853
BseLI	CCNNNNNNNGG	2 cut(s)	496, 849
BseMII	CTCAG	1 cut(s)	846
BseNI	ACTGG	1 cut(s)	501
BseSI	GKGCMC	1 cut(s)	658
BseXI	GCAGC	1 cut(s)	314
BseYI	CCCAGC	1 cut(s)	323
BsgI	GTGCAG	1 cut(s)	430
BshFI	GGCC	3 cut(s)	154, 202, 401
BshNI	GGYRCC	1 cut(s)	546
BsiHKAI	GWGCWC	1 cut(s)	658
BsiHKCI	CYCGRG	1 cut(s)	489
BslFI	GGGAC	2 cut(s)	340, 785
BslI	CCNNNNNNNGG	2 cut(s)	496, 849
BsmFI	GGGAC	2 cut(s)	340, 785
BsmI	GAATGC	3 cut(s)	281, 467, 632
BsnI	GGCC	3 cut(s)	154, 202, 401
BsoBI	CYCGRG	1 cut(s)	489
Bsp1286I	GDGCHC	1 cut(s)	658
Bsp143I	GATC	2 cut(s)	187, 259
Bsp19I	CCATGG	3 cut(s)	472, 550, 694
BspACI	CCGC	2 cut(s)	139, 227
BspANI	GGCC	3 cut(s)	154, 202, 401
BspCNI	CTCAG	1 cut(s)	847
BspHI	TCATGA	1 cut(s)	262
BspLI	GGNNCC	2 cut(s)	400, 548
BspMI	ACCTGC	1 cut(s)	107
BspT107I	GGYRCC	1 cut(s)	546
BspTI	CTTAAG	1 cut(s)	148
BsrI	ACTGG	1 cut(s)	501
BssECI	CCNNGG	5 cut(s)	197, 472, 550, 694, 843
BssMI	GATC	2 cut(s)	187, 259
BssT1I	CCWWGG	5 cut(s)	197, 472, 550, 694, 843
Bst2UI	CCWGG	4 cut(s)	156, 231, 342, 660
Bst4CI	ACNGT	3 cut(s)	532, 787, 819
BstAFI	CTTAAG	1 cut(s)	148
BstC8I	GCNNGC	3 cut(s)	47, 300, 598
BstDEI	CTNAG	4 cut(s)	607, 621, 855, 867
BstDSI	CCRYGG	3 cut(s)	472, 550, 694
BstF5I	GGATG	2 cut(s)	508, 853
BstKTI	GATC	2 cut(s)	190, 262
BstMBI	GATC	2 cut(s)	187, 259
BstMWI	GCNNNNNNNGC	1 cut(s)	42
BstNI	CCWGG	4 cut(s)	156, 231, 342, 660
BstNSI	RCATGY	1 cut(s)	53
BstPAI	GACNNNNGTC	1 cut(s)	332
BstSCI	CCNGG	4 cut(s)	154, 229, 340, 658
BstSLI	GKGCMC	1 cut(s)	658
BstV1I	GCAGC	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	154, 202, 401
BtgI	CCRYGG	3 cut(s)	472, 550, 694
BtsCI	GGATG	2 cut(s)	508, 853
BtsIMutI	CAGTG	2 cut(s)	459, 875
BveI	ACCTGC	1 cut(s)	107
Cac8I	GCNNGC	3 cut(s)	47, 300, 598
CciI	TCATGA	1 cut(s)	262
Cfr13I	GGNCC	2 cut(s)	245, 399
CseI	GACGC	2 cut(s)	430, 708
Csp6I	GTAC	1 cut(s)	547
CviAII	CATG	8 cut(s)	50, 257, 263, 280, 473, 551, 695, 703
CviQI	GTAC	1 cut(s)	547
DdeI	CTNAG	4 cut(s)	607, 621, 855, 867
DpnI	GATC	2 cut(s)	189, 261
DpnII	GATC	2 cut(s)	187, 259
Eco130I	CCWWGG	5 cut(s)	197, 472, 550, 694, 843
Eco147I	AGGCCT	1 cut(s)	154
Eco47I	GGWCC	1 cut(s)	245
Eco57I	CTGAAG	1 cut(s)	270
Eco88I	CYCGRG	1 cut(s)	489
EcoO109I	RGGNCCY	1 cut(s)	399
EcoRII	CCWGG	4 cut(s)	154, 229, 340, 658
EcoT14I	CCWWGG	5 cut(s)	197, 472, 550, 694, 843
EcoT22I	ATGCAT	2 cut(s)	281, 467
ErhI	CCWWGG	5 cut(s)	197, 472, 550, 694, 843
FaeI	CATG	8 cut(s)	53, 260, 266, 283, 476, 554, 698, 706
FalI	AAGNNNNNCTT	2 cut(s)	190, 222
FaqI	GGGAC	2 cut(s)	340, 785
FatI	CATG	8 cut(s)	49, 256, 262, 279, 472, 550, 694, 702
FbaI	TGATCA	1 cut(s)	259
Fnu4HI	GCNGC	1 cut(s)	303
FokI	GGATG	2 cut(s)	515, 860
Fsp4HI	GCNGC	1 cut(s)	303
GluI	GCNGC	1 cut(s)	303
GsaI	CCCAGC	1 cut(s)	327
GsuI	CTGGAG	1 cut(s)	518
HaeIII	GGCC	3 cut(s)	154, 202, 401
HgaI	GACGC	2 cut(s)	430, 708
Hin1II	CATG	8 cut(s)	53, 260, 266, 283, 476, 554, 698, 706
HincII	GTYRAC	1 cut(s)	517
HindII	GTYRAC	1 cut(s)	517
HindIII	AAGCTT	1 cut(s)	805
HinfI	GANTC	1 cut(s)	485
HpaI	GTTAAC	1 cut(s)	517
HphI	GGTGA	6 cut(s)	16, 131, 159, 368, 402, 518
Hpy166II	GTNNAC	4 cut(s)	245, 376, 517, 656
Hpy188III	TCNNGA	6 cut(s)	69, 185, 263, 314, 489, 673
Hpy8I	GTNNAC	4 cut(s)	245, 376, 517, 656
Hpy99I	CGWCG	1 cut(s)	177
HpyAV	CCTTC	2 cut(s)	417, 730
HpyCH4III	ACNGT	3 cut(s)	532, 787, 819
HpyCH4V	TGCA	9 cut(s)	61, 116, 256, 279, 302, 447, 465, 596, 656
HpyF10VI	GCNNNNNNNGC	1 cut(s)	42
HpyF3I	CTNAG	4 cut(s)	607, 621, 855, 867
Hsp92II	CATG	8 cut(s)	53, 260, 266, 283, 476, 554, 698, 706
KpnI	GGTACC	1 cut(s)	550
Ksp22I	TGATCA	1 cut(s)	259
KspAI	GTTAAC	1 cut(s)	517
Kzo9I	GATC	2 cut(s)	187, 259
Lsp1109I	GCAGC	1 cut(s)	314
LweI	GCATC	2 cut(s)	583, 726
MaeIII	GTNAC	5 cut(s)	52, 506, 526, 616, 790
MalI	GATC	2 cut(s)	189, 261
MboI	GATC	2 cut(s)	187, 259
MboII	GAAGA	3 cut(s)	11, 120, 809
MhlI	GDGCHC	1 cut(s)	658
MluCI	AATT	7 cut(s)	28, 130, 234, 360, 387, 648, 678
MnlI	CCTC	6 cut(s)	65, 104, 180, 259, 288, 493
Mph1103I	ATGCAT	2 cut(s)	281, 467
MroXI	GAANNNNTTC	1 cut(s)	163
MseI	TTAA	5 cut(s)	27, 149, 516, 710, 836
MslI	CAYNNNNRTG	2 cut(s)	261, 452
MspCI	CTTAAG	1 cut(s)	148
MspR9I	CCNGG	4 cut(s)	156, 231, 342, 660
Mva1269I	GAATGC	3 cut(s)	281, 467, 632
MvaI	CCWGG	4 cut(s)	156, 231, 342, 660
MwoI	GCNNNNNNNGC	1 cut(s)	42
NcoI	CCATGG	3 cut(s)	472, 550, 694
NdeII	GATC	2 cut(s)	187, 259
NlaIII	CATG	8 cut(s)	53, 260, 266, 283, 476, 554, 698, 706
NlaIV	GGNNCC	2 cut(s)	400, 548
NmuCI	GTSAC	3 cut(s)	52, 506, 526
NsiI	ATGCAT	2 cut(s)	281, 467
NspI	RCATGY	1 cut(s)	53
OliI	CACNNNNGTG	1 cut(s)	452
PagI	TCATGA	1 cut(s)	262
PaqCI	CACCTGC	1 cut(s)	107
PceI	AGGCCT	1 cut(s)	154
PctI	GAATGC	3 cut(s)	281, 467, 632
PdmI	GAANNNNTTC	1 cut(s)	163
PfeI	GAWTC	1 cut(s)	485
PkrI	GCNGC	1 cut(s)	304
PshAI	GACNNNNGTC	1 cut(s)	332
Psp6I	CCWGG	4 cut(s)	154, 229, 340, 658
PspFI	CCCAGC	1 cut(s)	323
PspGI	CCWGG	4 cut(s)	154, 229, 340, 658
PspN4I	GGNNCC	2 cut(s)	400, 548
PspPI	GGNCC	2 cut(s)	245, 399
RsaI	GTAC	1 cut(s)	548
RsaNI	GTAC	1 cut(s)	547
RseI	CAYNNNNRTG	2 cut(s)	261, 452
SaqAI	TTAA	5 cut(s)	27, 149, 516, 710, 836
SatI	GCNGC	1 cut(s)	303
Sau3AI	GATC	2 cut(s)	187, 259
Sau96I	GGNCC	2 cut(s)	245, 399
ScrFI	CCNGG	4 cut(s)	156, 231, 342, 660
SduI	GDGCHC	1 cut(s)	658
SfaNI	GCATC	2 cut(s)	583, 726
SinI	GGWCC	1 cut(s)	245
SmiMI	CAYNNNNRTG	2 cut(s)	261, 452
SmlI	CTYRAG	1 cut(s)	148
SmoI	CTYRAG	1 cut(s)	148
Sse9I	AATT	7 cut(s)	28, 130, 234, 360, 387, 648, 678
SseBI	AGGCCT	1 cut(s)	154
SsiI	CCGC	2 cut(s)	139, 227
StuI	AGGCCT	1 cut(s)	154
StyD4I	CCNGG	4 cut(s)	154, 229, 340, 658
StyI	CCWWGG	5 cut(s)	197, 472, 550, 694, 843
TaaI	ACNGT	3 cut(s)	532, 787, 819
TaqII	GACCGA	1 cut(s)	104
TasI	AATT	7 cut(s)	28, 130, 234, 360, 387, 648, 678
TfiI	GAWTC	1 cut(s)	485
Tru1I	TTAA	5 cut(s)	27, 149, 516, 710, 836
Tru9I	TTAA	5 cut(s)	27, 149, 516, 710, 836
TscAI	CASTG	2 cut(s)	459, 875
TseFI	GTSAC	3 cut(s)	52, 506, 526
TseI	GCWGC	1 cut(s)	302
Tsp45I	GTSAC	3 cut(s)	52, 506, 526
TspDTI	ATGAA	3 cut(s)	11, 372, 474
TspRI	CASTG	2 cut(s)	459, 875
Vha464I	CTTAAG	1 cut(s)	148
VneI	GTGCAC	1 cut(s)	654
VpaK11BI	GGWCC	1 cut(s)	245
XapI	RAATTY	1 cut(s)	130
XceI	RCATGY	1 cut(s)	53
XmnI	GAANNNNTTC	1 cut(s)	163
Zsp2I	ATGCAT	2 cut(s)	281, 467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.