Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005171.1

Orthogroup ID

OG0009490

Physical Location & Seq

Genomic Coordinates Forward (+)

68521 .. 69227

Gene Structure 707 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atggccttcgtccactccttcaccttccccatcaccgccaaaccttttcgcgccttccccaacccccgaacgccgtcgtttcccacgcgctccaccctcccttttcacaacctcctcactcgccgccactccgatgtcttcttcacctgggacgacgtcgtccggatatcccaaccggaatccctccccgacgacgacccttccgatctcaaatgctactccgacaagatcaaattctgcaaccgcggccacgaaatgcaatcggagttccgttccttcgtaattgaggaccaaatcgttgggtacattcacaacggatttgccgagaatttacggagttaccaggacgtttttacttttccaccaggccaggtaaccctgcattcttcgctgagctcacccgaggataggacaagagctgttggggatgtggttaagagcttaggggaagaattgattccaggtataagaaatgaggtactgcttgtgctaactgaatcggattctgttatatgtggtggcgtgcttatattctcggattgtgtgttgaaaaagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009536 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0017110 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0044715

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF4743 NUDIX

Protein Analysis

185

Amino Acids

20.96

Weight (kDa)

5.65

Isoelectric Point (pI)

52.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4743	PF15916	75 - 166	5.1e-22	Domain of unknown function (DUF4743)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0009490)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19460 AT5G19470 AT5G19470
fragaria_vesca	FvH4_1g05360
malus_domestica	MD15G1189600.v1.1
prunus_persica	Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1 Prupe.7G186600_v2.0.a1
pyrus_communis	pycom15g17000 pycom15g17020
rosa_chinensis	RchiOBHm_Chr2g0091041
rosa_laevigata	RLG00000016170
rosa_multiflora	Rmu_sc0003305.1_g000014 Rmu_sc0005171.1_g000014
rosa_roxburghii	Rroxscaffold_2G00150660
rosa_rugosa	Rorug02G0011700 Rorug02G0011700
rosa_samantha	Rh2AG058100 Rh2BG056400 Rh2CG058700 Rh2DG057900
rosa_wichuraiana	Rw2G005110

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	158
AatII	GACGTC	1 cut(s)	159
AccII	CGCG	3 cut(s)	51, 88, 246
AccIII	TCCGGA	1 cut(s)	162
AciI	CCGC	4 cut(s)	36, 124, 244, 246
AcoI	YGGCCR	1 cut(s)	247
AcsI	RAATTY	2 cut(s)	233, 328
AcyI	GRCGYC	1 cut(s)	156
AfaI	GTAC	2 cut(s)	305, 480
AfiI	CCNNNNNNNGG	1 cut(s)	408
AgsI	TTSAA	1 cut(s)	550
AjnI	CCWGG	5 cut(s)	146, 342, 364, 369, 460
AluBI	AGCT	3 cut(s)	396, 419, 441
AluI	AGCT	3 cut(s)	396, 419, 441
Alw21I	GWGCWC	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	401
Aor13HI	TCCGGA	1 cut(s)	162
AoxI	GGCC	3 cut(s)	3, 247, 367
ApoI	RAATTY	2 cut(s)	233, 328
Asp700I	GAANNNNTTC	1 cut(s)	456
AspLEI	GCGC	2 cut(s)	53, 90
AspS9I	GGNCC	1 cut(s)	289
AsuHPI	GGTGA	4 cut(s)	13, 25, 136, 390
AvaI	CYCGRG	1 cut(s)	401
AvaII	GGWCC	1 cut(s)	289
BanII	GRGCYC	1 cut(s)	398
BbsI	GAAGAC	1 cut(s)	130
Bbv12I	GWGCWC	1 cut(s)	398
BccI	CCATC	1 cut(s)	38
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	5 cut(s)	148, 344, 366, 371, 462
BisI	GCNGC	2 cut(s)	124, 247
BlpI	GCTNAGC	1 cut(s)	392
BlsI	GCNGC	2 cut(s)	125, 248
Bme1390I	CCNGG	5 cut(s)	148, 344, 366, 371, 462
Bme18I	GGWCC	1 cut(s)	289
BmeT110I	CYCGRG	1 cut(s)	401
BmgT120I	GGNCC	1 cut(s)	289
BmrFI	CCNGG	5 cut(s)	148, 344, 366, 371, 462
BpiI	GAAGAC	1 cut(s)	130
Bpu10I	CCTNAGC	1 cut(s)	442
Bpu1102I	GCTNAGC	1 cut(s)	392
BsaHI	GRCGYC	1 cut(s)	156
BsaJI	CCNNGG	3 cut(s)	147, 244, 402
BsaWI	WCCGGW	2 cut(s)	162, 175
Bsc4I	CCNNNNNNNGG	1 cut(s)	408
BseAI	TCCGGA	1 cut(s)	162
BseBI	CCWGG	5 cut(s)	148, 344, 366, 371, 462
BseDI	CCNNGG	3 cut(s)	147, 244, 402
BseGI	GGATG	1 cut(s)	433
BseLI	CCNNNNNNNGG	1 cut(s)	408
BseMII	CTCAG	1 cut(s)	383
BseRI	GAGGAG	1 cut(s)	104
Bsh1236I	CGCG	3 cut(s)	51, 88, 246
BshFI	GGCC	3 cut(s)	5, 249, 369
BsiHKAI	GWGCWC	1 cut(s)	398
BsiHKCI	CYCGRG	1 cut(s)	401
BsiSI	CCGG	2 cut(s)	163, 176
BslFI	GGGAC	1 cut(s)	164
BslI	CCNNNNNNNGG	1 cut(s)	408
BsmFI	GGGAC	1 cut(s)	164
BsmI	GAATGC	1 cut(s)	382
BsnI	GGCC	3 cut(s)	5, 249, 369
BsoBI	CYCGRG	1 cut(s)	401
Bsp1286I	GDGCHC	1 cut(s)	398
Bsp13I	TCCGGA	1 cut(s)	162
Bsp143I	GATC	2 cut(s)	205, 228
Bsp1720I	GCTNAGC	1 cut(s)	392
BspACI	CCGC	4 cut(s)	36, 124, 244, 246
BspANI	GGCC	3 cut(s)	5, 249, 369
BspCNI	CTCAG	1 cut(s)	384
BspEI	TCCGGA	1 cut(s)	162
BspFNI	CGCG	3 cut(s)	51, 88, 246
BssECI	CCNNGG	3 cut(s)	147, 244, 402
BssMI	GATC	2 cut(s)	205, 228
BssNI	GRCGYC	1 cut(s)	156
Bst2UI	CCWGG	5 cut(s)	148, 344, 366, 371, 462
BstACI	GRCGYC	1 cut(s)	156
BstC8I	GCNNGC	1 cut(s)	524
BstDEI	CTNAG	2 cut(s)	392, 442
BstDSI	CCRYGG	1 cut(s)	244
BstEII	GGTNACC	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	433
BstFNI	CGCG	3 cut(s)	51, 88, 246
BstHHI	GCGC	2 cut(s)	53, 90
BstKTI	GATC	2 cut(s)	208, 231
BstMBI	GATC	2 cut(s)	205, 228
BstMWI	GCNNNNNNNGC	2 cut(s)	246, 388
BstNI	CCWGG	5 cut(s)	148, 344, 366, 371, 462
BstPI	GGTNACC	1 cut(s)	373
BstSCI	CCNGG	5 cut(s)	146, 342, 364, 369, 460
BstUI	CGCG	3 cut(s)	51, 88, 246
BstV2I	GAAGAC	1 cut(s)	130
BstXI	CCANNNNNNTGG	1 cut(s)	299
BsuRI	GGCC	3 cut(s)	5, 249, 369
BtgI	CCRYGG	1 cut(s)	244
BtsCI	GGATG	1 cut(s)	433
Cac8I	GCNNGC	1 cut(s)	524
CfoI	GCGC	2 cut(s)	53, 90
Cfr13I	GGNCC	1 cut(s)	289
Cfr42I	CCGCGG	1 cut(s)	247
Csp6I	GTAC	2 cut(s)	304, 479
CviJI	RGCY	6 cut(s)	5, 249, 369, 396, 419, 441
CviKI_1	RGCY	6 cut(s)	5, 249, 369, 396, 419, 441
CviQI	GTAC	2 cut(s)	304, 479
DdeI	CTNAG	2 cut(s)	392, 442
DpnI	GATC	2 cut(s)	207, 230
DpnII	GATC	2 cut(s)	205, 228
DrdI	GACNNNNNNGTC	1 cut(s)	158
DseDI	GACNNNNNNGTC	1 cut(s)	158
EaeI	YGGCCR	1 cut(s)	247
Ecl136II	GAGCTC	1 cut(s)	396
Eco24I	GRGCYC	1 cut(s)	398
Eco32I	GATATC	1 cut(s)	168
Eco47I	GGWCC	1 cut(s)	289
Eco53kI	GAGCTC	1 cut(s)	396
Eco88I	CYCGRG	1 cut(s)	401
Eco91I	GGTNACC	1 cut(s)	373
EcoICRI	GAGCTC	1 cut(s)	396
EcoO65I	GGTNACC	1 cut(s)	373
EcoRII	CCWGG	5 cut(s)	146, 342, 364, 369, 460
EcoRV	GATATC	1 cut(s)	168
EcoT38I	GRGCYC	1 cut(s)	398
FaiI	YATR	4 cut(s)	467, 512, 514, 530
FaqI	GGGAC	1 cut(s)	164
Fnu4HI	GCNGC	2 cut(s)	124, 247
FokI	GGATG	1 cut(s)	440
FriOI	GRGCYC	1 cut(s)	398
Fsp4HI	GCNGC	2 cut(s)	124, 247
GlaI	GCGC	2 cut(s)	52, 89
GluI	GCNGC	2 cut(s)	124, 247
HaeIII	GGCC	3 cut(s)	5, 249, 369
HapII	CCGG	2 cut(s)	163, 176
HhaI	GCGC	2 cut(s)	53, 90
Hin1I	GRCGYC	1 cut(s)	156
Hin6I	GCGC	2 cut(s)	51, 88
HinP1I	GCGC	2 cut(s)	51, 88
HinfI	GANTC	4 cut(s)	179, 457, 497, 503
HpaII	CCGG	2 cut(s)	163, 176
HphI	GGTGA	4 cut(s)	13, 25, 136, 390
Hpy166II	GTNNAC	1 cut(s)	13
Hpy188I	TCNGA	6 cut(s)	133, 205, 223, 265, 502, 538
Hpy188III	TCNNGA	1 cut(s)	163
Hpy8I	GTNNAC	1 cut(s)	13
Hpy99I	CGWCG	5 cut(s)	79, 158, 161, 194, 197
HpyAV	CCTTC	6 cut(s)	16, 28, 34, 64, 210, 286
HpyCH4IV	ACGT	2 cut(s)	156, 348
HpyCH4V	TGCA	3 cut(s)	240, 259, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	246, 388
HpyF3I	CTNAG	2 cut(s)	392, 442
HpySE526I	ACGT	2 cut(s)	156, 348
Hsp92I	GRCGYC	1 cut(s)	156
HspAI	GCGC	2 cut(s)	51, 88
Kpn2I	TCCGGA	1 cut(s)	162
KspI	CCGCGG	1 cut(s)	247
Kzo9I	GATC	2 cut(s)	205, 228
LmnI	GCTCC	1 cut(s)	95
MaeII	ACGT	2 cut(s)	156, 348
MaeIII	GTNAC	2 cut(s)	338, 373
MalI	GATC	2 cut(s)	207, 230
MboI	GATC	2 cut(s)	205, 228
MboII	GAAGA	4 cut(s)	130, 133, 378, 461
MhlI	GDGCHC	1 cut(s)	398
MluCI	AATT	4 cut(s)	233, 282, 328, 452
MmeI	TCCRAC	1 cut(s)	246
MnlI	CCTC	7 cut(s)	107, 122, 125, 194, 280, 397, 469
MroI	TCCGGA	1 cut(s)	162
MroXI	GAANNNNTTC	1 cut(s)	456
MseI	TTAA	1 cut(s)	435
MslI	CAYNNNNRTG	1 cut(s)	132
MspA1I	CMGCKG	1 cut(s)	246
MspI	CCGG	2 cut(s)	163, 176
MspR9I	CCNGG	5 cut(s)	148, 344, 366, 371, 462
Mva1269I	GAATGC	1 cut(s)	382
MvaI	CCWGG	5 cut(s)	148, 344, 366, 371, 462
MvnI	CGCG	3 cut(s)	51, 88, 246
MwoI	GCNNNNNNNGC	2 cut(s)	246, 388
NdeII	GATC	2 cut(s)	205, 228
NmeAIII	GCCGAG	1 cut(s)	349
PcsI	WCGNNNNNNNCGW	2 cut(s)	201, 321
PctI	GAATGC	1 cut(s)	382
PdmI	GAANNNNTTC	1 cut(s)	456
PfeI	GAWTC	4 cut(s)	179, 457, 497, 503
PflFI	GACNNNGTC	2 cut(s)	155, 158
PkrI	GCNGC	2 cut(s)	125, 248
Psp124BI	GAGCTC	1 cut(s)	398
Psp6I	CCWGG	5 cut(s)	146, 342, 364, 369, 460
PspEI	GGTNACC	1 cut(s)	373
PspGI	CCWGG	5 cut(s)	146, 342, 364, 369, 460
PspPI	GGNCC	1 cut(s)	289
PsyI	GACNNNGTC	2 cut(s)	155, 158
RsaI	GTAC	2 cut(s)	305, 480
RsaNI	GTAC	2 cut(s)	304, 479
RseI	CAYNNNNRTG	1 cut(s)	132
SacI	GAGCTC	1 cut(s)	398
SacII	CCGCGG	1 cut(s)	247
SaqAI	TTAA	1 cut(s)	435
SatI	GCNGC	2 cut(s)	124, 247
Sau3AI	GATC	2 cut(s)	205, 228
Sau96I	GGNCC	1 cut(s)	289
ScrFI	CCNGG	5 cut(s)	148, 344, 366, 371, 462
SduI	GDGCHC	1 cut(s)	398
Sfr303I	CCGCGG	1 cut(s)	247
SgrBI	CCGCGG	1 cut(s)	247
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	132
Sse9I	AATT	4 cut(s)	233, 282, 328, 452
SsiI	CCGC	4 cut(s)	36, 124, 244, 246
SstI	GAGCTC	1 cut(s)	398
StyD4I	CCNGG	5 cut(s)	146, 342, 364, 369, 460
TaiI	ACGT	2 cut(s)	159, 351
TasI	AATT	4 cut(s)	233, 282, 328, 452
TauI	GCSGC	2 cut(s)	126, 249
TfiI	GAWTC	4 cut(s)	179, 457, 497, 503
Tru1I	TTAA	1 cut(s)	435
Tru9I	TTAA	1 cut(s)	435
TspGWI	ACGGA	3 cut(s)	260, 330, 349
Tth111I	GACNNNGTC	2 cut(s)	155, 158
VpaK11BI	GGWCC	1 cut(s)	289
XapI	RAATTY	2 cut(s)	233, 328
XmnI	GAANNNNTTC	1 cut(s)	456
ZraI	GACGTC	1 cut(s)	157

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.