Rmu_sc0005409.1_g000019

Possibly involved in carbohydrate binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005409.1
OG0012588
Physical Location & Seq
Forward (+)
83071 .. 84400
1330 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 915 bp
atgatttcaattgaaaagaaaaaggaacttaccatgctttcaatttcttcaggttcaagtgttccaaaaaatcctccattggaagcaatccaacaaagcaaaagacaagtgattcatgaaaaccatatacttttctcatctgcagtgtctactacccagcttgattcgattcctgtcgtaaatccaagtccaactgtaacgactcccacacttgtcttcccagcatccccaccaccaccaaccaccatgacaacccccaccacaaccccaacgactcccactacaatcccgccgactccccctatcccgccgactcccactacaaccccgacaactcccactacaaccccgacaactccctttacaactccgacaactccctccacaacccctgcatcatcaggtggtagtggtagttggtgtatagcaagccaatcagcttcagaaactgccctgcaggtagctcttgattatgcttgtggctatggaggtgcagactgttcaccaattcaaccaagtggaagctgttataacccaaacactctccgggatcacgcttcctatgccttcaataactattaccagaagaacccagctccaaccagctgtagttttggaggaacagcacaactgaccaccactgatccaagtagtggtagctgtcgctatccatcatccacagcatcaaccagctcgagtacaccaccttacggtccttaccagactccaccatcaacaccgacaagtatgacaacgccaccatccccgaccaccccgcttatagatactccaggtggatcaacaatttatggttcgccatcagagtcccccaacgccgccaactctatctcatcttgcatgcttctgctgtccaccacactcttggggtcacttcttgcagcaatttacctctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

304

Amino Acids

31.25

Weight (kDa)

5.48

Isoelectric Point (pI)

61.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 139 - 209 1.2e-21 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 531
Acc36I ACCTGC 1 cut(s) 448
AccB7I CCANNNNNTGG 1 cut(s) 653
AccI GTMKAC 1 cut(s) 149
AciI CCGC 4 cut(s) 290, 308, 776, 837
AclWI GGATC 3 cut(s) 558, 638, 805
AcuI CTGAAG 2 cut(s) 33, 426
AfaI GTAC 1 cut(s) 700
AfiI CCNNNNNNNGG 2 cut(s) 653, 710
AgsI TTSAA 6 cut(s) 9, 14, 42, 57, 512, 571
AjnI CCWGG 1 cut(s) 790
AluBI AGCT 8 cut(s) 160, 440, 464, 525, 596, 606, 660, 693
AluI AGCT 8 cut(s) 160, 440, 464, 525, 596, 606, 660, 693
AlwI GGATC 3 cut(s) 558, 638, 805
AlwNI CAGNNNCTG 1 cut(s) 449
Ama87I CYCGRG 1 cut(s) 694
ApeKI GCWGC 1 cut(s) 899
AspS9I GGNCC 1 cut(s) 713
AsuC2I CCSGG 1 cut(s) 548
AsuHPI GGTGA 1 cut(s) 495
AvaI CYCGRG 1 cut(s) 694
AvaII GGWCC 1 cut(s) 713
BbsI GAAGAC 1 cut(s) 208
BbvI GCAGC 1 cut(s) 911
BccI CCATC 4 cut(s) 679, 739, 769, 826
BciT130I CCWGG 1 cut(s) 792
BcnI CCSGG 1 cut(s) 548
BfmI CTRYAG 3 cut(s) 141, 455, 607
BfuAI ACCTGC 1 cut(s) 448
BisI GCNGC 2 cut(s) 837, 900
BlsI GCNGC 2 cut(s) 838, 901
Bme1390I CCNGG 2 cut(s) 548, 792
Bme18I GGWCC 1 cut(s) 713
BmeT110I CYCGRG 1 cut(s) 694
BmgT120I GGNCC 1 cut(s) 713
BmrFI CCNGG 2 cut(s) 548, 792
BmsI GCATC 3 cut(s) 233, 404, 692
BpiI GAAGAC 1 cut(s) 208
BpmI CTGGAG 1 cut(s) 774
BpuMI CCSGG 1 cut(s) 548
Bsc4I CCNNNNNNNGG 2 cut(s) 653, 710
BseBI CCWGG 1 cut(s) 792
BseGI GGATG 3 cut(s) 224, 674, 761
BseLI CCNNNNNNNGG 2 cut(s) 653, 710
BseXI GCAGC 1 cut(s) 911
BseYI CCCAGC 3 cut(s) 156, 220, 592
BsgI GTGCAG 1 cut(s) 513
BsiHKCI CYCGRG 1 cut(s) 694
BsiSI CCGG 1 cut(s) 547
BslFI GGGAC 1 cut(s) 811
BslI CCNNNNNNNGG 2 cut(s) 653, 710
BsmFI GGGAC 1 cut(s) 811
BsoBI CYCGRG 1 cut(s) 694
Bsp143I GATC 3 cut(s) 550, 643, 797
BspACI CCGC 4 cut(s) 290, 308, 776, 837
BspHI TCATGA 1 cut(s) 115
BspMAI CTGCAG 2 cut(s) 145, 459
BspMI ACCTGC 1 cut(s) 448
BspPI GGATC 3 cut(s) 558, 638, 805
BssMI GATC 3 cut(s) 550, 643, 797
Bst2UI CCWGG 1 cut(s) 792
Bst4CI ACNGT 3 cut(s) 196, 500, 713
BstC8I GCNNGC 2 cut(s) 430, 860
BstF5I GGATG 3 cut(s) 224, 674, 761
BstKTI GATC 3 cut(s) 553, 646, 800
BstMBI GATC 3 cut(s) 550, 643, 797
BstMWI GCNNNNNNNGC 1 cut(s) 563
BstNI CCWGG 1 cut(s) 792
BstNSI RCATGY 1 cut(s) 862
BstSCI CCNGG 2 cut(s) 546, 790
BstSFI CTRYAG 3 cut(s) 141, 455, 607
BstV1I GCAGC 1 cut(s) 911
BstV2I GAAGAC 1 cut(s) 208
BstXI CCANNNNNNTGG 1 cut(s) 883
BtsCI GGATG 3 cut(s) 224, 674, 761
BtsI GCAGTG 1 cut(s) 150
BtsIMutI CAGTG 2 cut(s) 150, 639
BveI ACCTGC 1 cut(s) 448
Cac8I GCNNGC 2 cut(s) 430, 860
CaiI CAGNNNCTG 1 cut(s) 449
CciI TCATGA 1 cut(s) 115
Cfr13I GGNCC 1 cut(s) 713
Csp6I GTAC 1 cut(s) 699
CviAII CATG 4 cut(s) 34, 116, 247, 859
CviQI GTAC 1 cut(s) 699
DpnI GATC 3 cut(s) 552, 645, 799
DpnII GATC 3 cut(s) 550, 643, 797
Eco47I GGWCC 1 cut(s) 713
Eco57I CTGAAG 2 cut(s) 33, 426
Eco88I CYCGRG 1 cut(s) 694
EcoRII CCWGG 1 cut(s) 790
FaeI CATG 4 cut(s) 37, 119, 250, 862
FaqI GGGAC 1 cut(s) 811
FatI CATG 4 cut(s) 33, 115, 246, 858
FauI CCCGC 3 cut(s) 297, 315, 783
FblI GTMKAC 1 cut(s) 149
Fnu4HI GCNGC 2 cut(s) 837, 900
FokI GGATG 3 cut(s) 211, 661, 748
Fsp4HI GCNGC 2 cut(s) 837, 900
GluI GCNGC 2 cut(s) 837, 900
GsaI CCCAGC 3 cut(s) 160, 224, 596
GsuI CTGGAG 1 cut(s) 774
HapII CCGG 1 cut(s) 547
Hin1II CATG 4 cut(s) 37, 119, 250, 862
HinfI GANTC 9 cut(s) 112, 164, 169, 202, 274, 295, 313, 724, 824
HpaII CCGG 1 cut(s) 547
HphI GGTGA 1 cut(s) 495
Hpy166II GTNNAC 4 cut(s) 150, 503, 701, 873
Hpy188I TCNGA 4 cut(s) 372, 445, 823, 914
Hpy188III TCNNGA 2 cut(s) 116, 467
Hpy8I GTNNAC 4 cut(s) 150, 503, 701, 873
HpyAV CCTTC 1 cut(s) 577
HpyCH4III ACNGT 3 cut(s) 196, 500, 713
HpyCH4V TGCA 6 cut(s) 143, 395, 457, 494, 858, 899
HpyF10VI GCNNNNNNNGC 1 cut(s) 563
Hsp92II CATG 4 cut(s) 37, 119, 250, 862
Kzo9I GATC 3 cut(s) 550, 643, 797
LmnI GCTCC 1 cut(s) 601
Lsp1109I GCAGC 1 cut(s) 911
LweI GCATC 3 cut(s) 233, 404, 692
MaeIII GTNAC 2 cut(s) 196, 888
MalI GATC 3 cut(s) 552, 645, 799
MboI GATC 3 cut(s) 550, 643, 797
MboII GAAGA 3 cut(s) 39, 208, 598
MfeI CAATTG 1 cut(s) 9
MluCI AATT 5 cut(s) 9, 42, 507, 804, 903
MlyI GAGTC 6 cut(s) 196, 268, 289, 307, 718, 833
MmeI TCCRAC 4 cut(s) 115, 215, 395, 623
MnlI CCTC 4 cut(s) 84, 391, 482, 611
MspA1I CMGCKG 1 cut(s) 606
MspI CCGG 1 cut(s) 547
MspR9I CCNGG 2 cut(s) 548, 792
MunI CAATTG 1 cut(s) 9
MvaI CCWGG 1 cut(s) 792
MwoI GCNNNNNNNGC 1 cut(s) 563
NciI CCSGG 1 cut(s) 548
NdeII GATC 3 cut(s) 550, 643, 797
NlaIII CATG 4 cut(s) 37, 119, 250, 862
NmuCI GTSAC 1 cut(s) 888
NspI RCATGY 1 cut(s) 862
PaeI GCATGC 1 cut(s) 862
PaeR7I CTCGAG 1 cut(s) 694
PagI TCATGA 1 cut(s) 115
PfeI GAWTC 3 cut(s) 112, 164, 169
PflMI CCANNNNNTGG 1 cut(s) 653
PfoI TCCNGGA 1 cut(s) 546
PkrI GCNGC 2 cut(s) 838, 901
PleI GAGTC 6 cut(s) 196, 268, 289, 307, 718, 832
PpsI GAGTC 6 cut(s) 196, 268, 289, 307, 718, 832
PsiI TTATAA 1 cut(s) 531
Psp6I CCWGG 1 cut(s) 790
PspFI CCCAGC 3 cut(s) 156, 220, 592
PspGI CCWGG 1 cut(s) 790
PspPI GGNCC 1 cut(s) 713
PspXI VCTCGAGB 1 cut(s) 694
PstI CTGCAG 2 cut(s) 145, 459
PstNI CAGNNNCTG 1 cut(s) 449
PvuII CAGCTG 1 cut(s) 606
RsaI GTAC 1 cut(s) 700
RsaNI GTAC 1 cut(s) 699
SatI GCNGC 2 cut(s) 837, 900
Sau3AI GATC 3 cut(s) 550, 643, 797
Sau96I GGNCC 1 cut(s) 713
SbfI CCTGCAGG 1 cut(s) 459
SchI GAGTC 6 cut(s) 196, 268, 289, 307, 718, 833
ScrFI CCNGG 2 cut(s) 548, 792
SdaI CCTGCAGG 1 cut(s) 459
SfaNI GCATC 3 cut(s) 233, 404, 692
SfcI CTRYAG 3 cut(s) 141, 455, 607
Sfr274I CTCGAG 1 cut(s) 694
SinI GGWCC 1 cut(s) 713
SlaI CTCGAG 1 cut(s) 694
SmlI CTYRAG 1 cut(s) 694
SmoI CTYRAG 1 cut(s) 694
SphI GCATGC 1 cut(s) 862
Sse8387I CCTGCAGG 1 cut(s) 459
Sse9I AATT 5 cut(s) 9, 42, 507, 804, 903
SsiI CCGC 4 cut(s) 290, 308, 776, 837
StyD4I CCNGG 2 cut(s) 546, 790
TaaI ACNGT 3 cut(s) 196, 500, 713
TaqI TCGA 2 cut(s) 167, 695
TasI AATT 5 cut(s) 9, 42, 507, 804, 903
TatI WGTACW 1 cut(s) 698
TauI GCSGC 1 cut(s) 839
TfiI GAWTC 3 cut(s) 112, 164, 169
TscAI CASTG 2 cut(s) 150, 646
TseFI GTSAC 1 cut(s) 888
TseI GCWGC 1 cut(s) 899
Tsp45I GTSAC 1 cut(s) 888
TspDTI ATGAA 2 cut(s) 104, 132
TspRI CASTG 2 cut(s) 150, 646
Van91I CCANNNNNTGG 1 cut(s) 653
VpaK11BI GGWCC 1 cut(s) 713
XceI RCATGY 1 cut(s) 862
XcmI CCANNNNNNNNNTGG 1 cut(s) 880
XhoI CTCGAG 1 cut(s) 694
XmiI GTMKAC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.