Rmu_sc0005526.1_g000008

Component of the cytosolic iron-sulfur (Fe-S) protein assembly (CIA) machinery. Required for the maturation of extramitochondrial Fe-S proteins. Part of an electron transfer chain functioning in an early step of cytosolic Fe-S biogenesis. Electrons are transferred to the Fe-S cluster from NADPH via a FAD- and FMN-containing diflavin oxidoreductase. Has anti- apoptotic effects in the cell

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005526.1
OG0008748
Physical Location & Seq
Reverse (-)
56204 .. 56773
570 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 291 bp
ctgattgatgaggatagtctattaacggaagaggacttgaagaaaccccagccggtcgtagctgatgattgtgaagttggaagcacaaggaaagcttgtaaaaattgcacttgtgggagggctgaagcggagcaaaaagtagagaagttacaatccactgtggatttgagcagtttccagtcagcatgtggcagttgtggactaggggatgctttccgatgcgctacatgtccttataagggtcttcctccattcaaaccgggcgagaaggtagcgttctcttcaaactaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006790 GO:0008150 GO:0008152 GO:0009987 GO:0016043 GO:0016226 GO:0022607 GO:0031163 GO:0044085 GO:0044237 GO:0044424 GO:0044464 GO:0051186 GO:0071840
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
CIAPIN1 Methyltransf_11

Protein Analysis

96

Amino Acids

10.25

Weight (kDa)

4.9

Isoelectric Point (pI)

57.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CIAPIN1 PF05093 55 - 92 2.7e-16 Cytokine-induced anti-apoptosis inhibitor 1, Fe-S biogenesis
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 237
AciI CCGC 1 cut(s) 128
AcuI CTGAAG 1 cut(s) 144
AfiI CCNNNNNNNGG 1 cut(s) 239
AflIII ACRYGT 1 cut(s) 227
AgsI TTSAA 3 cut(s) 40, 256, 285
AluBI AGCT 2 cut(s) 62, 95
AluI AGCT 2 cut(s) 62, 95
AspLEI GCGC 1 cut(s) 224
AsuC2I CCSGG 1 cut(s) 261
BbsI GAAGAC 1 cut(s) 236
BcnI CCSGG 1 cut(s) 261
BfaI CTAG 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 261
BmrFI CCNGG 1 cut(s) 261
BmsI GCATC 2 cut(s) 199, 209
BpiI GAAGAC 1 cut(s) 236
BpuMI CCSGG 1 cut(s) 261
Bsc4I CCNNNNNNNGG 1 cut(s) 239
Bse118I RCCGGY 1 cut(s) 52
Bse1I ACTGG 1 cut(s) 178
BseGI GGATG 1 cut(s) 214
BseLI CCNNNNNNNGG 1 cut(s) 239
BseNI ACTGG 1 cut(s) 178
BseYI CCCAGC 1 cut(s) 48
Bsh1285I CGRYCG 1 cut(s) 57
BsiEI CGRYCG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 53, 260
BslI CCNNNNNNNGG 1 cut(s) 239
BspACI CCGC 1 cut(s) 128
BsrFI RCCGGY 1 cut(s) 52
BsrI ACTGG 1 cut(s) 178
BssAI RCCGGY 1 cut(s) 52
Bst4CI ACNGT 1 cut(s) 160
Bst6I CTCTTC 2 cut(s) 24, 286
BstF5I GGATG 1 cut(s) 214
BstHHI GCGC 1 cut(s) 224
BstMCI CGRYCG 1 cut(s) 57
BstNSI RCATGY 2 cut(s) 189, 231
BstSCI CCNGG 1 cut(s) 259
BstV2I GAAGAC 1 cut(s) 236
BtsCI GGATG 1 cut(s) 214
BtsIMutI CAGTG 1 cut(s) 156
CfoI GCGC 1 cut(s) 224
Cfr10I RCCGGY 1 cut(s) 52
CviAII CATG 2 cut(s) 186, 228
CviJI RGCY 4 cut(s) 52, 62, 95, 122
CviKI_1 RGCY 4 cut(s) 52, 62, 95, 122
Eam1104I CTCTTC 2 cut(s) 24, 286
EarI CTCTTC 2 cut(s) 24, 286
Eco57I CTGAAG 1 cut(s) 144
FaeI CATG 2 cut(s) 189, 231
FaiI YATR 3 cut(s) 187, 229, 237
FalI AAGNNNNNCTT 2 cut(s) 79, 111
FatI CATG 2 cut(s) 185, 227
FokI GGATG 1 cut(s) 221
FspBI CTAG 1 cut(s) 203
GlaI GCGC 1 cut(s) 223
GsaI CCCAGC 1 cut(s) 52
HapII CCGG 2 cut(s) 53, 260
HhaI GCGC 1 cut(s) 224
Hin1II CATG 2 cut(s) 189, 231
Hin6I GCGC 1 cut(s) 222
HinP1I GCGC 1 cut(s) 222
HindIII AAGCTT 1 cut(s) 93
HpaII CCGG 2 cut(s) 53, 260
Hpy166II GTNNAC 1 cut(s) 200
Hpy188I TCNGA 1 cut(s) 218
Hpy8I GTNNAC 1 cut(s) 200
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 1 cut(s) 160
HpyCH4V TGCA 1 cut(s) 108
Hsp92II CATG 2 cut(s) 189, 231
HspAI GCGC 1 cut(s) 222
LmnI GCTCC 1 cut(s) 130
LpnPI CCDG 4 cut(s) 62, 66, 191, 273
LweI GCATC 2 cut(s) 199, 209
MaeI CTAG 1 cut(s) 203
MaeIII GTNAC 1 cut(s) 147
MboII GAAGA 4 cut(s) 41, 52, 236, 273
MluCI AATT 1 cut(s) 103
MmeI TCCRAC 1 cut(s) 58
MnlI CCTC 4 cut(s) 4, 25, 111, 258
MseI TTAA 1 cut(s) 23
MspI CCGG 2 cut(s) 53, 260
MspR9I CCNGG 1 cut(s) 261
NciI CCSGG 1 cut(s) 261
NlaIII CATG 2 cut(s) 189, 231
NspI RCATGY 2 cut(s) 189, 231
PciI ACATGT 1 cut(s) 227
PscI ACATGT 1 cut(s) 227
PsiI TTATAA 1 cut(s) 237
PspFI CCCAGC 1 cut(s) 48
SaqAI TTAA 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 261
SetI ASST 3 cut(s) 64, 97, 273
SfaNI GCATC 2 cut(s) 199, 209
Sse9I AATT 1 cut(s) 103
SsiI CCGC 1 cut(s) 128
SspMI CTAG 1 cut(s) 203
StyD4I CCNGG 1 cut(s) 259
TaaI ACNGT 1 cut(s) 160
TasI AATT 1 cut(s) 103
Tru1I TTAA 1 cut(s) 23
Tru9I TTAA 1 cut(s) 23
TscAI CASTG 1 cut(s) 163
TspGWI ACGGA 1 cut(s) 41
TspRI CASTG 1 cut(s) 163
XceI RCATGY 2 cut(s) 189, 231
XcmI CCANNNNNNNNNTGG 1 cut(s) 185
XspI CTAG 1 cut(s) 203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.