Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006137.1

Orthogroup ID

OG0004714

Physical Location & Seq

Genomic Coordinates Reverse (-)

13601 .. 15075

Gene Structure 1475 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgcttaagctgaaggattggcccccttctgataagtttgagaatcttttgccccgacattgtgatgaatttattactgccttgccatttcaagagtacacagatcctagagctggacttcttaaccttgctgttaagttgccacctggagtcttgaaaccagacatgggtccaaaaacatatattgcttatgggcttgtggaagagcttggaagaggggattccgtaaccaagctgcattgtgatatgtctgatgcggttaatattttgacacatacagcagaaataaagctaggtgatgagcagaaatcggcaatttcaatgctaaaagaattacatagagcccaagatgagagagagcttcagaattgggtgaattctcagtctggacagtctggagcacagatagggaatgatgaagaaatcatagaaaagaattacaatagggaattgaaggttccagaagatgatgcagatgggcccacactttctggttctccctgcacggaagcagtagaggaaaccggtggtgctttgtgggacattttccgcagggaagatgtccctaagttggaggcttatctgaagaagcactataaagaattcaggcacacttactgttcgttagttgaacgagttattcatccaattcatgatcaatccttttatttgacaatggatcacaaaaggaagcttaaggaagaatttggagtcgaaccatggacatttgtacaaagccttggagaggctgtatttatacctgctggatgcccacaccaagttaggaatctcaagtcttgtacaaaagtagctgtagactttgtatccccagaaaatgtccatgagtgcctccgtttaactaaggacttcagacagcttcccaagaatcatagagctagagaggacaaacttgagataaagaaaatgatactatatgcggtcgaccaagctgttaaggatttggaagccttggtagcaactcaagtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000785 GO:0000976 GO:0001067 GO:0003674 GO:0003676 GO:0003677 GO:0003682 GO:0003690 GO:0003824 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0006325 GO:0006355 GO:0006464 GO:0006482 GO:0006807 GO:0006996 GO:0008150 GO:0008152 GO:0008214 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0016569 GO:0016570 GO:0016577 GO:0019219 GO:0019222 GO:0019538 GO:0031323 GO:0031326 GO:0031490 GO:0031974 GO:0031981 GO:0032451 GO:0032452 GO:0032454 GO:0033169 GO:0036211 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0051276 GO:0060255 GO:0065007 GO:0070013 GO:0070076 GO:0070988 GO:0071704 GO:0071840 GO:0080090 GO:0097159 GO:0140096 GO:1901363 GO:1901564 GO:1903506 GO:1990837 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04714 map04714

Pfam Domains

Protein Families

JmjC zf-4CXXC_R1

Protein Analysis

329

Amino Acids

37.49

Weight (kDa)

5.61

Isoelectric Point (pI)

49.19

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
JmjC	PF02373	160 - 274	1.6e-15	JmjC domain, hydroxylase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004714)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G11950 AT1G11950 AT1G11950 AT1G62310
fragaria_vesca	FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550 FvH4_3g01550
malus_domestica	MD05G1351300.v1.1 MD10G1325700.v1.1
prunus_persica	Prupe.4G016300_v2.0.a1
pyrus_communis	pycom05g31840 pycom10g27540
rosa_chinensis	RchiOBHm_Chr5g0002371
rosa_laevigata	RLG00000031023
rosa_multiflora	Rmu_co8351855.1_g000001 Rmu_co8445921.1_g000001 Rmu_sc0006137.1_g000004 Rmu_sc0006137.1_g000005 Rmu_sc0017945.1_g000004
rosa_rugosa	Rorug04G0395600 Rorug04G0395700.1
rosa_samantha	Rh5AG018400 Rh5BG021100 Rh5CG020300 Rh5DG019300
rosa_wichuraiana	Rw5G001730

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	769
AccI	GTMKAC	2 cut(s)	816, 942
AciI	CCGC	3 cut(s)	257, 550, 938
AclWI	GGATC	2 cut(s)	98, 687
AcsI	RAATTY	4 cut(s)	68, 376, 602, 704
AcuI	CTGAAG	4 cut(s)	32, 347, 605, 853
AfaI	GTAC	3 cut(s)	98, 732, 802
AfiI	CCNNNNNNNGG	4 cut(s)	113, 167, 571, 745
AflII	CTTAAG	2 cut(s)	5, 695
AgeI	ACCGGT	1 cut(s)	524
AgsI	TTSAA	5 cut(s)	92, 157, 321, 454, 632
AjnI	CCWGG	1 cut(s)	145
Alw21I	GWGCWC	1 cut(s)	403
AlwI	GGATC	2 cut(s)	98, 687
AoxI	GGCC	2 cut(s)	20, 479
ApaI	GGGCCC	1 cut(s)	483
ApeKI	GCWGC	1 cut(s)	235
ApoI	RAATTY	4 cut(s)	68, 376, 602, 704
AsiGI	ACCGGT	1 cut(s)	524
AspS9I	GGNCC	4 cut(s)	21, 170, 479, 480
AsuHPI	GGTGA	2 cut(s)	308, 385
AvaII	GGWCC	1 cut(s)	170
BaeGI	GKGCMC	1 cut(s)	483
BanII	GRGCYC	2 cut(s)	346, 483
Bbv12I	GWGCWC	1 cut(s)	403
BbvI	GCAGC	1 cut(s)	222
BccI	CCATC	1 cut(s)	470
BciT130I	CCWGG	1 cut(s)	147
BciVI	GTATCC	1 cut(s)	835
BclI	TGATCA	1 cut(s)	655
BfaI	CTAG	3 cut(s)	108, 293, 897
BfmI	CTRYAG	1 cut(s)	813
BfrI	CTTAAG	2 cut(s)	5, 695
BfuAI	ACCTGC	1 cut(s)	769
BfuI	GTATCC	1 cut(s)	835
BisI	GCNGC	1 cut(s)	236
BlsI	GCNGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	147
Bme18I	GGWCC	1 cut(s)	170
BmgT120I	GGNCC	4 cut(s)	21, 170, 479, 480
BmiI	GGNNCC	4 cut(s)	23, 171, 459, 481
BmrFI	CCNGG	1 cut(s)	147
BmsI	GCATC	3 cut(s)	244, 460, 758
BoxI	GACNNNNGTC	1 cut(s)	168
BpmI	CTGGAG	2 cut(s)	168, 417
BpuEI	CTTGAG	3 cut(s)	776, 932, 966
BsaJI	CCNNGG	3 cut(s)	719, 739, 969
BsaWI	WCCGGW	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	735, 765
Bsc4I	CCNNNNNNNGG	4 cut(s)	113, 167, 571, 745
Bse118I	RCCGGY	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	147
BseDI	CCNNGG	3 cut(s)	719, 739, 969
BseGI	GGATG	2 cut(s)	643, 773
BseLI	CCNNNNNNNGG	4 cut(s)	113, 167, 571, 745
BseMII	CTCAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	1 cut(s)	222
BsgI	GTGCAG	1 cut(s)	487
Bsh1285I	CGRYCG	1 cut(s)	942
BshFI	GGCC	2 cut(s)	22, 481
BshTI	ACCGGT	1 cut(s)	524
BsiEI	CGRYCG	1 cut(s)	942
BsiHKAI	GWGCWC	1 cut(s)	403
BsiSI	CCGG	1 cut(s)	525
BslFI	GGGAC	2 cut(s)	548, 554
BslI	CCNNNNNNNGG	4 cut(s)	113, 167, 571, 745
BsmFI	GGGAC	2 cut(s)	548, 554
BsnI	GGCC	2 cut(s)	22, 481
Bsp120I	GGGCCC	1 cut(s)	479
Bsp1286I	GDGCHC	3 cut(s)	346, 403, 483
Bsp1407I	TGTACA	2 cut(s)	730, 800
Bsp143I	GATC	3 cut(s)	103, 655, 679
Bsp19I	CCATGG	1 cut(s)	719
BspACI	CCGC	3 cut(s)	257, 550, 938
BspANI	GGCC	2 cut(s)	22, 481
BspCNI	CTCAG	1 cut(s)	394
BspHI	TCATGA	1 cut(s)	652
BspLI	GGNNCC	4 cut(s)	23, 171, 459, 481
BspMI	ACCTGC	1 cut(s)	769
BspPI	GGATC	2 cut(s)	98, 687
BspQI	GCTCTTC	1 cut(s)	198
BspTI	CTTAAG	2 cut(s)	5, 695
BsrFI	RCCGGY	1 cut(s)	524
BsrGI	TGTACA	2 cut(s)	730, 800
BssAI	RCCGGY	1 cut(s)	524
BssECI	CCNNGG	3 cut(s)	719, 739, 969
BssMI	GATC	3 cut(s)	103, 655, 679
BssT1I	CCWWGG	3 cut(s)	719, 739, 969
Bst2UI	CCWGG	1 cut(s)	147
Bst4CI	ACNGT	2 cut(s)	393, 620
Bst6I	CTCTTC	2 cut(s)	198, 208
BstAFI	CTTAAG	2 cut(s)	5, 695
BstAUI	TGTACA	2 cut(s)	730, 800
BstDEI	CTNAG	3 cut(s)	381, 567, 861
BstDSI	CCRYGG	1 cut(s)	719
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	2 cut(s)	643, 773
BstKTI	GATC	3 cut(s)	106, 658, 682
BstMBI	GATC	3 cut(s)	103, 655, 679
BstMCI	CGRYCG	1 cut(s)	942
BstMWI	GCNNNNNNNGC	1 cut(s)	974
BstNI	CCWGG	1 cut(s)	147
BstPAI	GACNNNNGTC	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	145
BstSFI	CTRYAG	1 cut(s)	813
BstSLI	GKGCMC	1 cut(s)	483
BstV1I	GCAGC	1 cut(s)	222
BstX2I	RGATCY	1 cut(s)	103
BstYI	RGATCY	1 cut(s)	103
BsuI	GTATCC	1 cut(s)	835
BsuRI	GGCC	2 cut(s)	22, 481
BtgI	CCRYGG	1 cut(s)	719
BtsCI	GGATG	2 cut(s)	643, 773
BveI	ACCTGC	1 cut(s)	769
CciI	TCATGA	1 cut(s)	652
Cfr10I	RCCGGY	1 cut(s)	524
Cfr13I	GGNCC	4 cut(s)	21, 170, 479, 480
Csp6I	GTAC	3 cut(s)	97, 731, 801
CspAI	ACCGGT	1 cut(s)	524
CviAII	CATG	4 cut(s)	166, 653, 720, 842
CviQI	GTAC	3 cut(s)	97, 731, 801
DdeI	CTNAG	3 cut(s)	381, 567, 861
DpnI	GATC	3 cut(s)	105, 657, 681
DpnII	GATC	3 cut(s)	103, 655, 679
Eam1104I	CTCTTC	2 cut(s)	198, 208
EarI	CTCTTC	2 cut(s)	198, 208
Eco130I	CCWWGG	3 cut(s)	719, 739, 969
Eco24I	GRGCYC	2 cut(s)	346, 483
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	4 cut(s)	32, 347, 605, 853
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoRI	GAATTC	2 cut(s)	376, 602
EcoRII	CCWGG	1 cut(s)	145
EcoT14I	CCWWGG	3 cut(s)	719, 739, 969
EcoT38I	GRGCYC	2 cut(s)	346, 483
ErhI	CCWWGG	3 cut(s)	719, 739, 969
FaeI	CATG	4 cut(s)	169, 656, 723, 845
FaqI	GGGAC	2 cut(s)	548, 554
FatI	CATG	4 cut(s)	165, 652, 719, 841
FbaI	TGATCA	1 cut(s)	655
FblI	GTMKAC	2 cut(s)	816, 942
Fnu4HI	GCNGC	1 cut(s)	236
FokI	GGATG	2 cut(s)	630, 780
FriOI	GRGCYC	2 cut(s)	346, 483
Fsp4HI	GCNGC	1 cut(s)	236
FspBI	CTAG	3 cut(s)	108, 293, 897
GluI	GCNGC	1 cut(s)	236
GsuI	CTGGAG	2 cut(s)	168, 417
HaeIII	GGCC	2 cut(s)	22, 481
HapII	CCGG	1 cut(s)	525
Hin1II	CATG	4 cut(s)	169, 656, 723, 845
HincII	GTYRAC	1 cut(s)	943
HindII	GTYRAC	1 cut(s)	943
HindIII	AAGCTT	1 cut(s)	692
HinfI	GANTC	6 cut(s)	43, 150, 221, 711, 787, 886
HpaII	CCGG	1 cut(s)	525
HphI	GGTGA	2 cut(s)	308, 385
Hpy166II	GTNNAC	3 cut(s)	99, 817, 943
Hpy188I	TCNGA	5 cut(s)	31, 253, 366, 585, 872
Hpy188III	TCNNGA	6 cut(s)	92, 154, 387, 396, 461, 653
Hpy8I	GTNNAC	3 cut(s)	99, 817, 943
HpyAV	CCTTC	3 cut(s)	7, 36, 448
HpyCH4III	ACNGT	2 cut(s)	393, 620
HpyCH4V	TGCA	3 cut(s)	238, 473, 504
HpyF10VI	GCNNNNNNNGC	1 cut(s)	974
HpyF3I	CTNAG	3 cut(s)	381, 567, 861
Hsp92II	CATG	4 cut(s)	169, 656, 723, 845
Ksp22I	TGATCA	1 cut(s)	655
Kzo9I	GATC	3 cut(s)	103, 655, 679
LguI	GCTCTTC	1 cut(s)	198
LmnI	GCTCC	1 cut(s)	398
Lsp1109I	GCAGC	1 cut(s)	222
LweI	GCATC	3 cut(s)	244, 460, 758
MaeI	CTAG	3 cut(s)	108, 293, 897
MaeIII	GTNAC	1 cut(s)	226
MalI	GATC	3 cut(s)	105, 657, 681
MboI	GATC	3 cut(s)	103, 655, 679
MboII	GAAGA	7 cut(s)	215, 225, 431, 476, 569, 598, 713
MflI	RGATCY	1 cut(s)	103
MhlI	GDGCHC	3 cut(s)	346, 403, 483
MlyI	GAGTC	2 cut(s)	159, 720
MmeI	TCCRAC	1 cut(s)	552
MnlI	CCTC	6 cut(s)	209, 511, 568, 739, 860, 895
MseI	TTAA	7 cut(s)	6, 123, 135, 261, 696, 857, 954
MslI	CAYNNNNRTG	1 cut(s)	63
MspCI	CTTAAG	2 cut(s)	5, 695
MspI	CCGG	1 cut(s)	525
MspR9I	CCNGG	1 cut(s)	147
MvaI	CCWGG	1 cut(s)	147
MwoI	GCNNNNNNNGC	1 cut(s)	974
NcoI	CCATGG	1 cut(s)	719
NdeII	GATC	3 cut(s)	103, 655, 679
NlaIII	CATG	4 cut(s)	169, 656, 723, 845
NlaIV	GGNNCC	4 cut(s)	23, 171, 459, 481
PagI	TCATGA	1 cut(s)	652
PciSI	GCTCTTC	1 cut(s)	198
PfeI	GAWTC	4 cut(s)	43, 221, 787, 886
PinAI	ACCGGT	1 cut(s)	524
PkrI	GCNGC	1 cut(s)	237
PleI	GAGTC	2 cut(s)	158, 719
PpsI	GAGTC	2 cut(s)	158, 719
PshAI	GACNNNNGTC	1 cut(s)	168
Psp6I	CCWGG	1 cut(s)	145
PspGI	CCWGG	1 cut(s)	145
PspN4I	GGNNCC	4 cut(s)	23, 171, 459, 481
PspOMI	GGGCCC	1 cut(s)	479
PspPI	GGNCC	4 cut(s)	21, 170, 479, 480
PsuI	RGATCY	1 cut(s)	103
RsaI	GTAC	3 cut(s)	98, 732, 802
RsaNI	GTAC	3 cut(s)	97, 731, 801
RseI	CAYNNNNRTG	1 cut(s)	63
SalI	GTCGAC	1 cut(s)	941
SapI	GCTCTTC	1 cut(s)	198
SaqAI	TTAA	7 cut(s)	6, 123, 135, 261, 696, 857, 954
SatI	GCNGC	1 cut(s)	236
Sau3AI	GATC	3 cut(s)	103, 655, 679
Sau96I	GGNCC	4 cut(s)	21, 170, 479, 480
SchI	GAGTC	2 cut(s)	159, 720
ScrFI	CCNGG	1 cut(s)	147
SduI	GDGCHC	3 cut(s)	346, 403, 483
SfaNI	GCATC	3 cut(s)	244, 460, 758
SfcI	CTRYAG	1 cut(s)	813
SinI	GGWCC	1 cut(s)	170
SmiMI	CAYNNNNRTG	1 cut(s)	63
SmlI	CTYRAG	5 cut(s)	5, 695, 791, 911, 981
SmoI	CTYRAG	5 cut(s)	5, 695, 791, 911, 981
SsiI	CCGC	3 cut(s)	257, 550, 938
SspI	AATATT	1 cut(s)	265
SspMI	CTAG	3 cut(s)	108, 293, 897
StyD4I	CCNGG	1 cut(s)	145
StyI	CCWWGG	3 cut(s)	719, 739, 969
TaaI	ACNGT	2 cut(s)	393, 620
TaqI	TCGA	2 cut(s)	714, 942
TatI	WGTACW	3 cut(s)	96, 730, 800
TfiI	GAWTC	4 cut(s)	43, 221, 787, 886
Tru1I	TTAA	7 cut(s)	6, 123, 135, 261, 696, 857, 954
Tru9I	TTAA	7 cut(s)	6, 123, 135, 261, 696, 857, 954
TseI	GCWGC	1 cut(s)	235
TspDTI	ATGAA	4 cut(s)	81, 432, 632, 641
TspGWI	ACGGA	3 cut(s)	214, 521, 842
Vha464I	CTTAAG	2 cut(s)	5, 695
VpaK11BI	GGWCC	1 cut(s)	170
XagI	CCTNNNNNAGG	1 cut(s)	743
XapI	RAATTY	4 cut(s)	68, 376, 602, 704
XmiI	GTMKAC	2 cut(s)	816, 942
XspI	CTAG	3 cut(s)	108, 293, 897

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.